Array 1 24000-23834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084676.1 Bacillus safensis strain BcP62 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 23999 32 96.9 35 ................A............... TTTGCGGCGAAGATAGAAGGTTTCACCGAGAACGG 23932 32 93.8 35 ...........T....T............... TGTCCTTTAGATGTCACATAGTTGTTTTTGAACCA 23865 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACTCTACATAAGTGCGTGGATTGAAATGTTTAGTTGTAGCATGAAAATGTATCAATTAGGTAGTCGCACTCTACATGAGTGAATTGAAATTGAAAAACAATAGCAGAATCATACATCGTAATTGATATGAGGATCTAAATAAAGTTCATCGTCAATAGGTACCTTGAAAGGAATATTGACAATTGCACTTGATATAAGTGTGAAAAACATAACTCTCGCACCTGATCCAGTAGTCATGTATTTAGTTGAATACAAAGTTGTTGCTGTAATAAGTATGATTAACAAGTTTCAAAAGATTTAAATAAATAGATTTCATTCTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATAAGGGCGGAAATCGCA # Right flank : GGTGAATGGTGGGAAAAGACAGGAAATCTTGGTGTTGCACTCAACATATGTGCATAGATCACTGTTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTATACAAATGATTAATCAAAATAATGTACTTTCCCCCTAAATCCAAGCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCAGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAATGACCTTTGCTTCGGTAGCGTAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGAGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATCTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGC # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24894-24404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084676.1 Bacillus safensis strain BcP62 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24893 32 90.6 34 ...G.......T....T............... AATAGCATCTAATCGTTGTAATAGGTTCATTTTT 24827 32 100.0 36 ................................ CGGTAGAACGGTTTATTAGAATAACTCGCCTTCGTT 24759 32 96.9 33 ...G............................ CGCGCCGTTTATGAATTTCTCTATGTCTTTTTC 24694 32 93.8 29 ...G...............T............ AAATTTGCAATTTCTTGGAGTCTCTTCGT 24637 32 84.4 36 ...G................A.AA..G..... TATTTCCAACCGTAATAAATTTACCTTGTCCTTCAA 24570 32 93.8 35 ...G.......T.................... CCCGCCTTTCTTTTCAGCTTTTTGAGTTTGTCCAG 24504 32 90.6 35 .C.G..........A................. GTTTAGTTGTAGCATGAAAATGTATCAATTAGGTA 24437 32 84.4 0 ...G...............AA.T........A | AA [24410] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 91.8 34 GTCACACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCGACACCGATTCATTTCTTAACGGTGGTCAACGGCTGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCTGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGAGTGAAAACAAAGTATTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : ACAATAGCAGAATCATACATCGTAATTGATATGAGGATCTAAATAAAGTTCATCGTCAATAGGTACCTTGAAAGGAATATTGACAATTGCACTTGATATAAGTGTGAAAAACATAACTCTCGCACCTGATCCAGTAGTCATGTATTTAGTTGAATACAAAGTTGTTGCTGTAATAAGTATGATTAACAAGTTTCAAAAGATTTAAATAAATAGATTTCATTCTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATAAGGGCGGAAATCGCAGTCGCACTCTACATGAATGCGTGGATTGAAATTTTGCGGCGAAGATAGAAGGTTTCACCGAGAACGGGTCGCACTCTATATGATTGCGTGGATTGA # Questionable array : NO Score: 6.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 33184-32557 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084676.1 Bacillus safensis strain BcP62 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33183 32 100.0 34 ................................ CTTATCTTTTCAATGATTCGCTTATTGCGTTGCC 33117 32 93.8 33 ...A...............T............ TTTGTTCTTCTTCTCAATTTCCTTAAGAGCATT 33052 32 100.0 34 ................................ CTATCGAAAAGGTTGTCCGTATTCTTCCAAATCC 32986 32 93.8 35 ..................CT............ TAATGTAAGTCTCTAATGTAAGTGACACTATTTAT 32919 32 100.0 34 ................................ TTCTGGAGTAACATCTACCCGTTCGTTGTCATAT 32853 32 93.8 34 ...........T.......T............ GTCTCACGCTTTGCCATGACTACATTTCCTTCGA 32787 32 96.9 35 ...........T.................... AACGCCTTAATGCTCCCTACGGTGAGCTTACCGTT 32720 32 93.8 34 ......T........................G GATACCATTGAAGTAATCTCTGGTTTTAATAGCG 32654 32 93.8 34 ...................A...........G CTAAAGTTGATGTTGAAAGAAGCGATCAAGGTTT 32588 32 90.6 0 .......................AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 10 32 95.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTATCATTTCCTAAAAAATGTTACAATTAGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGAGGATTGAAATAATCTTGTTAAGTTGATTAAATTTATTGATTACGTTGCACTTGATATGAGTAGTTGAATTAAGATCATCATCCGTAGGTAGTTTAAAAGGAATATTGACAATTGCACTTGATATAAGTTTGAAAAATATAACTCTGTCCCCTGACTCAGTAGCGATGCTTTGAATCGAATTCAAAATTGTAGCTGAAATAATGAAATAAGTAATTATCAAGATTTAATAGGTTTATTTAAATAGAATTCAGATTAAGAAAAATTCGATGCGAATGTGAGGTGAACTTAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTAATGAAGAAGAAAACAAAATTCTATATTGAAATTTGTGAATTTTGCCTATTATTCCCTAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : GATTGTGTCTTAAACGGGTATGACATTCTCAGAGATCATGATCTTACAACATCCTCTTTCAGATACAAAAGCCATCAAAATAAACTGTTCATATGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTGAATACACCTAAAAAAATCTCAAAACAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACTGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATG # Questionable array : NO Score: 8.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //