Array 1 209174-208047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZS01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N42468 N42468_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209173 27 93.1 32 --........................... CCACAGCCGCCGCGACAATAAATTAACTCACT 209114 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 209053 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 208992 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 208931 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 208870 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 208809 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 208748 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 208686 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 208624 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 208563 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 208502 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 208441 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 208380 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 208319 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 208258 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208197 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208136 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208075 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 485347-487204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZS01000006.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N42468 N42468_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485347 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 485408 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 485469 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 485530 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 485591 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 485652 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 485713 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 485774 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 485835 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 485896 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 485957 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 486018 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 486079 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 486140 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 486201 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 486262 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 486323 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 486384 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 486445 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 486506 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 486567 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 486628 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 486689 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 486750 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 486811 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 486872 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 486933 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 486994 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 487055 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 487116 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 487177 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503886-504217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZS01000006.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N42468 N42468_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503886 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 503947 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 504008 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 504069 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 504130 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 504191 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //