Array 1 14093-11526 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDMD01000004.1 Aeropyrum pernix strain YK1-12-2013 apycontig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 14092 24 100.0 43 ........................ GATGGCTAAGGCCAGCCAGGCCGCCCACCTTATGGATCATAAG 14025 24 100.0 38 ........................ AAGCCCGATCACCCCCTTCTCGGGCGAACACCTCAACA 13963 24 100.0 40 ........................ AGAGCAAAACCTAGAGATAGACCCCCCATGCCAGAGTAGA 13899 24 100.0 38 ........................ CTATCGGCACGGCCCCTACTATCTCGCCCGCATCGTTG 13837 24 100.0 41 ........................ AAAGGGCGGAGAGGCATCGGCCTAGGTGCCGCCGCCCCGCT 13772 24 100.0 41 ........................ ATAGTTATCAATGACCCCCAGCACTATGACATTGTCTCTTA 13707 24 100.0 44 ........................ CTGAAAAGCACTTACTCAATCAAAACCATAACCGTGGGCTATGA 13639 24 100.0 41 ........................ TACTGATATATACACGTTATGGATAAAGCATAAGTAACTGG 13574 24 100.0 40 ........................ CACCAGCCCCGAGGCCAGTCAGCCTCGCCTCGAACCCAGG 13510 24 100.0 46 ........................ GTTTACCCTTTATGATGAAGGATAAAGAAGGAGGGAGGAAGAGAGC 13440 24 100.0 40 ........................ CGTACAACTGTCTGTAGTTGTGCCAGGCTAGCTTAACGGC 13376 24 100.0 42 ........................ GACTAGCATGACCAGGTGCCACCTAGGCGGGTCGCCGGACTG 13310 24 100.0 38 ........................ TTCCTGTGTTCTTTATGTATGCCTTGTATGCCTTGCTA 13248 24 100.0 50 ........................ GATTTGCGGTGGCACTAGCTGTTATTGGACTCCTCCCTATGCTTATGGTT 13174 24 100.0 44 ........................ TCAAGGCTGGGGCGTCTGCTGCTAGACACTTCAACGCCCACCTC 13106 24 100.0 37 ........................ GTAGGTTGCTGGATAGTCTGAGGGGTTCACCAGGCTA 13045 24 100.0 41 ........................ CGACAATATTACCATCCATACCTGGCTCCCTCCCTCTTAGA 12980 24 100.0 46 ........................ TAGTACTAGATGGTGTAACGGTATCCAAGTCGATCCACTGATCCGT 12910 24 100.0 39 ........................ CAGGTAGGTGGCGAGCACGAGCGTGCCAACCAGTATCGG 12847 24 100.0 37 ........................ ATTTGTCTCAGGATGCCCATTCTGGCCTGGGTTAATG 12786 24 100.0 38 ........................ TAGGCTTCTCCGCCACTACACGCCACCCCCTAGCTTAA 12724 24 100.0 39 ........................ TCCTAGGGAAGCCCCTCCCAACGTAAAGCTCAGCCGTGT 12661 24 100.0 41 ........................ TGGTCTACCCACGCACTCTCCAGCTCCCTCTCGCCATCCGT 12596 24 100.0 38 ........................ TGCCGTATGTAAAATAGATTCAGTTGAAACGGCGTTAG 12534 24 100.0 45 ........................ CCAGAACCAGCCCTAAATCAGAGTGAGTCCTGGTTACATATGTGT 12465 24 100.0 39 ........................ GTAGCTTAATACTTCTAAAAGTTACGTGATAGAGCTCGC 12402 24 100.0 43 ........................ CCTATCTATCATCTCTACCTCGGTGTCAAAGATGTAAACGTCG 12335 24 100.0 45 ........................ ATACTCCCGGAAGCCCTGGAGCATGGATAAGATTAGACGTGTCAT 12266 24 100.0 39 ........................ GCCATAAGCCTAACACGGTTGAGATAGCCTAGGTACCTG 12203 24 100.0 40 ........................ AGGGCCCCGAATATGGCCCTAGTCATATCTCTAGCAACAG 12139 24 100.0 39 ........................ CATATTCTATACAGTCTAGGCCCAGCAAGGCCATGTTCC 12076 24 100.0 44 ........................ ACCAGATAACGTTGCTTGCTCCTTCTCGGCATGGCTCGGCTTTG 12008 24 100.0 43 ........................ TTTGTTGGTGCCCACGAGTTGGTCAAAGTTGTATGTCTTCACT 11941 24 100.0 37 ........................ CAGCATAATAGTGAGGCAGAACGTTCTCTCACAGAGG 11880 24 100.0 40 ........................ GGCCAAGATAAGGCACCTGAATAGAAATGTGAAAAGGTGG 11816 24 100.0 38 ........................ AGTGGTAGTGTAAACGTGACGTATCTAGGCTAACGTAA 11754 24 100.0 44 ........................ AAGAAGCAGGAGGTGGAGGGAGAGCTGGGATGACGAGAGTTAGG 11686 24 100.0 45 ........................ CAGTCTCTACGCCGCAGTCATACTGAACTCTCCTACCCGCCTCGA 11617 24 100.0 44 ........................ ATGTTATAATATGCGTAGCTCTCCCTTCCATCCACCTCTGCCCT 11549 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 40 24 100.0 41 GAATCTTCGAGATAGAATTGCAAG # Left flank : TCAGCCTGAGGAACACCATAGACGACCTCCTAAGAAGCTACAGGGCAGCCTCCGAAACCCTAGAAGCCGCCCGAAAATAGCGAACCAGAAAAACACAGACAGACTAGTTAAAACATAAACAACACCCAAAACTTTTCCCCTATTCCGTGGGGACGTATATACGTTTAGATTTGGGTAGTGTTTATTAGGCCTGGTTGGGACCCCCTCTCCTGCTGTATATATTCTCATTTGCGGTTGTTTTTGTATCACGGCTTTTTCCCCTCCACCGGGGGGAGTATATACTCCTACCTCATGGGTAAAAGTTATTAGGCCCGGTGTGAACCCCTCATATGGCGAGGCCCCCGGGAGTGGGCTGGGGGCTGGAGTGGTAGCTCCTGGGGGCCGGGGGTTTATCTATGTGATAGAGTTGACTATAACCCCGCCCCCGGGATGATAGAGTGGAGAATAGAATATAGTATCGGCTGTAGACACTACAACACACACAAACAAAACCATGTGCA # Right flank : TGGTTTGTAGGGCTCTTGCGGCTGTGTGGCATATTTTTATAGCCTCGGCTTTGGCATGTTGTGAGGTGGGGATGGCTAGGCTTGGTTAGGGGTGGAATTAGGGATACGTGGAGGCTGAAGAAGTGGTTTAAGGTTGTGGCGCCACCGCTGTTCGGGGAGACTGTGCTAGGGACTACGCCGGCGGATGACCCGGACAAGCTTATTGGGAGGGTTATGGAGACTACACTCTTCGACATCACCGGCGACTATAGCTACGTCCACGTTAAGATGTACTTCCAGGTTGTGAGGGTGGAGGGGGACACGGCCTACACCCGGTTCAAGGGCCACGAGCTTCTGAGGGACTATATCAGGGGGTTGACGAGGAGGAAGAGCAGCAAGGTCACCGGCATATTCAACGTGTGGACTAAGGACGGCTACGGCCTCAGGGTGACGGCTATGGCGTTCACACGGCAGCGCTGCAAGACGAGCCAGAAGAGCGCTATAAGGAAGGTGATGCAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTTCGAGATAGAATTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1014-4711 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDMD01000024.1 Aeropyrum pernix strain YK1-12-2013 apycontig024, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 1014 24 100.0 45 ........................ GAACCAGCTCAGCATGCGCCTGAAGAACGCTATACCACCTATCCT 1083 24 100.0 38 ........................ CGGCTCATAACCTCGACCGCCTCCGCCCAAGTAAGCGG 1145 24 100.0 43 ........................ GAGGTCACCAGCGCATACCTTATGCAGTCCGGCGACCCGCCTG 1212 24 100.0 45 ........................ ATGGACCCCAAAGGGTGAGAAACATGAGTGTGAGTGTGAGTAAAA 1281 24 100.0 41 ........................ GGAGCAATGTTGATGGGGTATTGGATGTTACTGGAGCTAGT 1346 24 100.0 44 ........................ ACGCTACAAAGGTGAGAGGAGGCGTTTACAACGTTGGTAGCGGG 1414 24 100.0 45 ........................ CCACGTTTCAAGTCGTTATAGTAATCCGTTAGTATGCTGGCCACA 1483 24 100.0 36 ........................ TTTAGTGCTATGATTGCTGCGATCTCTGCAGCACTG 1543 24 100.0 37 ........................ AGGCGCCACCGTTAGCCTTGACATACACGTTTATCTT 1604 24 100.0 40 ........................ ACAGCTACTTCTACAACGCCCCCGTCCACCCGCCGTTCTT 1668 24 100.0 40 ........................ AACCTCTATCTGCCCCTCTGGCTCTGGGGGCTCTCCGTAC 1732 24 100.0 44 ........................ TGAGCCCACCCGGGCCATAGACTACATTGAGGCTATACTGGATA 1800 24 100.0 41 ........................ CCCTAGTTTTACCGTCTACCTCAACCTCGGCGTAAAAACAG 1865 24 100.0 45 ........................ GGTAACCCTGATATATAGGCAGCGACACACATGCAGCGGACGGAG 1934 24 100.0 43 ........................ GCCAGGGGCCTAGTGCGGGCTCGGTCTCGGTGGGTCTTAGCCT 2001 24 100.0 39 ........................ AGGCGAAAGAGGCGTTAGAGGAAGTGGCTAACATGCTCT 2064 24 100.0 41 ........................ TCCCATATCCTGGGAGGGTAAGTACTGGAGCGTAGACCCGG 2129 24 100.0 40 ........................ GGAGTTCAACATGGTGATAAACGAGAAGACTCTAGAGATG 2193 24 100.0 45 ........................ GATTCTCCATACTCCCCGTTCTCGACAAGCATCACCGAGTAGATG 2262 24 100.0 41 ........................ ATGAGATAGCATACGTCTACGCCGTCGCAACCGATATTAAT 2327 24 100.0 39 ........................ GTGGCCACATTGTGGTTATGGCGTACGCTTCTGGATGCA 2390 24 100.0 38 ........................ TTAGATGGCTGTATAGCCATGCTAGGAGGCTCCTGGAG 2452 24 100.0 35 ........................ CAAACAACGGCGCGGTTATCATACGATTCAAAAGC 2511 24 100.0 41 ........................ GAGAAGCGGGCTGCCTGGGAACTGGGCCGCCCTAGTAGCAG 2576 24 100.0 38 ........................ ACGCCGCCCTCAGCATTGGCTACAGCAGACCCGATAGT 2638 24 100.0 37 ........................ CGCTAACTTCAACTACGTTATACTCTGTAGAATTTGC 2699 24 100.0 40 ........................ CTAGCATACCCGGGCGGCGCCTGCTTCACTATCACATTAA 2763 24 100.0 41 ........................ GGTGAGGGTGAGGGTCTACCTAGATAGGAAGGTGGATTGTG 2828 24 100.0 38 ........................ ACCTCTTATAGGCTAGATAGCTTAGCACTAGTATCCCG 2890 24 100.0 38 ........................ TAGGTATTCCAGGTGGGGGCACTTGTCCCTGAAAATCT 2952 24 100.0 43 ........................ GCCCAAATCCCCCCATTTCCTTATAATAGAAAATGATTGTTAG 3019 24 100.0 39 ........................ TTACACCACACGGAAGCATCTAGCCGAGGCTGCGAGGAG 3082 24 100.0 40 ........................ TAAACACGCGGCTCAAGCTCTAAAGGCTCGCCTCGAAGGT 3146 24 100.0 40 ........................ CGCGCCCCCAATAGAATCGCATACGACTTCTCGATTGGCT 3210 24 100.0 40 ........................ AGGGCGGCGGGCTGAACCTGCGCAGCCTGCTGATACCCCT 3274 24 100.0 36 ........................ CTCTCCCCGTGTTTATTATAAGGTGCGGCTTGGGGT 3334 24 100.0 39 ........................ GAACACCTGTTATAGTGTCGCAAGTATCCACCACGTGAT 3397 24 100.0 43 ........................ GAGCCCACGAACGCCTTGGCCCTGTATGGGGTTGGCTTTCTGC 3464 24 100.0 37 ........................ GATTTTGCTCTACTAATAAACCTAAACCAGGGTAAGG 3525 24 100.0 37 ........................ CAGGATGGCTTAGGGGGGTGAACTAGCATGGTCCAGA 3586 24 100.0 37 ........................ GACCTAGGCGGGGAGGACACAAAGTTTGTAATGGGTA 3647 24 100.0 45 ........................ GAAAAAACCGTTGTCGAGGCTCGGAGCCGACCTTTTCAGTATATA 3716 24 100.0 41 ........................ TACCCTTTTTTTGTAACGTCGTGTCCTAACCTTTATGTTAT 3781 24 100.0 38 ........................ TCGTCTGAAATTAAAACATACGTTTCGCCGCCAGCACT 3843 24 100.0 37 ........................ AGGAGTGCGGACTACACTACAGACCCGGATATAGGGG 3904 24 100.0 41 ........................ TCAGGTTACGATAACCGCGCCGGGGCGGATCGATTTTTTAA 3969 24 100.0 40 ........................ GGGCCCAATCTATATCTGCGTGTCCTAACCTCTATCCTAT 4033 24 100.0 42 ........................ GGTTTCGCCAGGGTGGAGCTGAACTGGCGCCGGGGCGCCAAG 4099 24 100.0 39 ........................ CCGCCGCCGCTATACTCATATAAATTTTTATATAAGTAG 4162 24 100.0 39 ........................ CCAACATTCTTTTGGATAAGGTTGATTTTTTGGTTGAGC 4225 24 100.0 41 ........................ TTATATCCACGGTGGTGGCGTATCCGAGAAGCCTATCGAAT 4290 24 100.0 45 ........................ AGCTGGACAGGCTTATCAAGATATTACAGGAGCATTACGGGGAGA 4359 24 100.0 38 ........................ CCCGGATAACGCTAGTCAAGCTTTCGCCCGCCGAGCTT 4421 24 100.0 42 ........................ CGTTATACAATGCCCAAAAGGTTTAGGAAGCCGTAGGCTAAG 4487 24 100.0 47 ........................ CCGGGTATCCGCTGCCCCCCGACGGGCCTGTCATCCTCTCTAGGCTC 4558 24 100.0 43 ........................ TGGAGAAGGGTGGGGAAGCTGGGTGTCGAAGTAGACCTTGTTG 4625 24 100.0 39 ........................ TAAGAAGTAGGGGGGCACCTCCGCCGAACACCTCGACGT 4688 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 58 24 100.0 40 CTTGCAATTCTATCTCGAAGATTC # Left flank : AGGGTGGAGGTACCGCTAGAGTGTCCCGAGCTCAGGCTCCGCGGAGTGATCGACCTTGTAGCAGGCCCCCACGGAAGGAGGGGCTACTGGATAATGGAGGCTAAGAAGCACCCGAGGAGGCCCAGGGCATCTAAACATTTTCAGGCGCAGCTCCTAGCCTACGCTCTGCTAGCGACTAAAACCCTGGGCCCCGTGTACAGAGCAACACTCTACATAGGAGGCGCGACGAAAACCCTGGATATAAACCAGAGACACCTTCAGACGGCCGAGAAGCTAGTAAAGAAAACCCTCAAAACGGTCGAAGAAGAGGAACCACCCCTTACAAGACAGCCACCGCAGAAATGCAGGTACTGCTTCTACAGAAAACTATGCCCCAATGCAAACCCCCATTTATAAAATTTTATAAACAGCCTCACACGTAAACCTCCAACCCTCATCACTTAACAATATCGGAAAATCACGTCTCAGCCAAGCTTCAAGAACATAGACTGGATGATGAG # Right flank : CTGCACATGGTTTTGTTGGTGTGTGTTGTAGTGTCTACAGCCGATACTATATTCTATTCTCCACTCTATCATCCCGGGGGCGGGGTTATAGTCAACTCTATCACATAGATAAACCCCCAGCCCCCGGGTCTTACTATACCGGCCCCCAGGCCTTTCCCGGGGGCCTCGCCATATGAGGGGTTCACACCAGGCCTAATAACTTTTACCCACGAGGTAGGAGTATATACTCCCCCCGGTAGAGGGGAAAAAGCCGTGATACAAAAACAACCGCACATGAGAATATATACAGCAGGAGAGGGGGTCCCAACCAAGCCTAATAAACACTACCCCAATCTAAACGTATATACATCACCACGGAATAGGGGAAAAGTTTTGGGTTATAGTTTTTCTAGTAGTTCTTTTAGTGTTGTTTTTACTGTTTCTAGTTTTTTCTTTGTTTCTTCGCATTCCGGTGTTGGGATTGTTATCTTTAGCTTCCCTGTTTTTATCATATCGTAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTCTATCTCGAAGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //