Array 1 184784-183958 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPV01000004.1 Acidovorax temperans strain DSM 7270 Ga0242573_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 184783 36 86.1 30 TGCTA............................... GTGCGACACGCCCAGCTCCTTGGCGCAGTA 184717 36 100.0 30 .................................... TCGCCTCGACGCCTTCAACTCTGACATCCA 184651 36 100.0 29 .................................... CCTGGATGACGCCATCAGCCAAGCGCAGC 184586 36 100.0 30 .................................... CCATCTGTGCAGCGGTCTTGCCAAAGCCTG 184520 36 100.0 29 .................................... ATTCGTGGCGATCACGTAGGGCGCAACCA 184455 36 100.0 30 .................................... AAGCTGGCTGAGGTGCTTGGGAATGGCTGA 184389 36 100.0 30 .................................... GATCAGCTTGTTTGGTATCGCCACCTGAAC 184323 36 100.0 30 .................................... CTATCCGTCAGTCAGGCTTGCTTTACAGCG 184257 36 100.0 30 .................................... AGAAAGGTTTGTGAAGTCCGCAACAGACAG 184191 36 100.0 30 .................................... GAACTCACCTGGCGGTGTTGACTTCAATCA 184125 36 100.0 30 .................................... ACTCGAGTTCATCAACTTCAATGAGTTCCT 184059 36 100.0 30 .................................... AACGACCTCGCAGGTTGAGCCTTTAACGGT 183993 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Left flank : TAGCCTGTTTATCGGAACAGCGCGCACTTCTACAGTGCCTGGATCACCAACCACTCTTCCCTGAAAGAACCTTCCATGCCCGCCCGTGATGTTGTCTTCCCCGCAGGCCGCCAGGCGCTGTACGAGCGCAACCGCTATTCGCCCGCCGTGCGCTCCAACGGCTTTCTGTTTGTCTCGGGCCAGGTGGGCAGCCGCGAAGACGGCTCGCCCGAGCCCGACCTGGCCGCGCAGGTGCGCCTGGCATTCAGCAACCTCAACGAGGTGCTTCAGGCAGCGGGCTGCACGTTTGATGACGTGGTGGACGTGACGATGTTCGTGGTCAACCCCGAGGCGAACTTCGAGACCGTGTGGAGCGTGGTGCCCGAGTTCTGGGGCGAGGCGCCCTACCCCACGCTGACGGGCATGGGGGTGAGCTGGCTGTATGGGTTCCAGTTCGAGATCAAGGTGGTGGCGCGGTTGCCGTAGGGCTGAAAAACAATAGCTCATATGCCACGCCATTC # Right flank : CTGATCGCGATAACCTCTTGATAACAAAAGAAGTTTTCGCTTTCAGAGGACTATAAAACCGCGCCATTTGGTAACCATCCCCCGGCAAAGCCGGGGGCATTCGGGATGTGAGCCGCTCAAAGCGGCTGTAAGGGGTCGCTAACGCGGCCCCTCATTCTTGGGGCCACCTATCGGTGGCTACTCACCTCCATAGACCGAGTTGGTCCAACCTCTCGTCTTCCTTCTCCTGGTTTCGGATGTACTCCCGTATCACCGCTTCGTCGCGTCCCACCGTCGAGACGAAGTACCCTCGCGCCCAGAAGTGCTGACCCACGAAGTTGCGCTTTCGCTCTCCGTACACCCGCGCAAGGTGGATTGCGCTCTTGCCTTTGATAAAGCCCACCACCTGCGACACCGAGTACTTCGGTGGGATCGACAGCATCATGTGCACGTGATCGGGCATCAGATGCCCCTCTTCAACCCTGCATTCCTTTTGCGCGGCCAACTTTCTGAATACCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 124648-124018 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPV01000005.1 Acidovorax temperans strain DSM 7270 Ga0242573_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 124647 36 100.0 30 .................................... TATCTCACGCAGCACGGCCTCGCGTCGTGT 124581 36 97.2 30 .........................T.......... GGTACATCTTGCGCAGCGTGCGTTCATGAG 124515 36 100.0 30 .................................... GTTGCTGCGGCGCTCAATGCCTGGGTTGCC 124449 36 100.0 30 .................................... TGTCGCGGATCGGTATCAGCAGAGCCATGT 124383 36 100.0 30 .................................... CGGGCGCTTTGAGTTCCATGAGGCCCACCT 124317 36 100.0 30 .................................... GTCGGTGGTTGATGAAATTCAGCTAATGCG 124251 36 100.0 30 .................................... AGAACTATCAGCGTCCCTTCGCAGTGACGA 124185 36 100.0 30 .................................... AGCAGCATTGGTGATGGCGAACACCGCTGA 124119 36 100.0 30 .................................... TCTGTGTAGAACTGGTCTACAAACGTGCTC 124053 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 AGTGTAGCTATCCGGGGTGAGAGCGGGAGCTACAAC # Left flank : CGCCCTCAAGCGCGCCATTTATACCGGCCGGATCAGCCCGGCGCAGGCCAAACGTGTCGATGAAATGCAGGCTGTGGCCGATGCGTTGAGCCTGATGGCCAACATCGTGATGGCGTGGAATACCTCACAGATGCAGGCGGTCCTGGATCGCTGGTCGAACCGCCGCCAGGTCATTCCACCGGAACTGATCGGGAAGATTGCGCCCACCAGGCTGGAGAGCATCAACTTGCGGGGTGTGTTTCGCTTCCCGGTTGACCGCTATGCTGACCAAATCCTGCCTTCGCGGCCAAATGCATCGATAACTGGCACCAATGGATGAAACCGACCACGGTTTGACGCCACGAATCGCAGATTTGAAAGTGAACAGGAAAGTCAATGAAATCAACGATCTACCAACACCACCTCCGCGCCAGTGCTAGCTTTTCGTACCGTCACTTATTGCACTGAAAACGAGGAGACCCCGCTTCAAGCCAAGCCTGGAGCGGGTTTCGTGATGGTCG # Right flank : CACCCGGTGGGGACCGTCCGCACCGCCTCTCTAGACAAAGGGACAGCGGCATCAAAATTTATACATATTTGCATTTTTTGTCTATATATAAAATTTCCGTTACTATCCTCCCGTCGCACTACGGTGCCTCCAAACGGCAGGCACGAGCGATGCATACCGCTGTTTCACCCCAGCCGAAACACATCCATTGCGCGCCCCAGCGATTCGGCACCGTCCTTGAGGCCCTGCGCCGCCGCCGTGGACTGCTCCACCAACGCGGCGTTCTGCTGCGTCACCGTGTCGAGCTGGGTCACGGCCTCGTTGACCTGGGCGATGCCCTGCGACTGCTCGCGCGTGGCGCTGCTGATCTGCTGCACCAGCGCGCTCACGCGTTCCACCGCGTCCACCACGCCGCGGATGGTGGTGCCCGCGTGGTCCATCTGCTGGGCGCCGCTGGCGATCTGGTCGACCGTCTCGCCGATCAGGCCGCTGATCTCCCTGGCCGAGCTGGCGCTGCGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCTATCCGGGGTGAGAGCGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //