Array 1 455432-456924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHIBF010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SBJ09P NODE_2_length_601207_cov_33.510313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455432 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455493 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455554 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455615 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455676 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455737 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455798 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455859 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455920 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455981 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 456042 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 456103 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456164 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456225 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456286 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456347 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456409 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456470 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456531 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456592 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456653 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456714 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456775 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456836 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456897 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 473056-475020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHIBF010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SBJ09P NODE_2_length_601207_cov_33.510313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 473056 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 473117 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473178 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473239 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473300 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473361 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473422 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473484 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473545 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473606 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473667 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473728 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473789 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473850 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473911 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473972 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 474033 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 474094 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 474155 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474216 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474277 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474339 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474442 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474503 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474564 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474625 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474686 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474747 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474808 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474869 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474930 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474991 29 96.6 0 A............................ | A [475017] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //