Array 1 38435-39908 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXFJ01000015.1 Pseudomonas aeruginosa strain AUS214 IPC236_15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38435 28 100.0 32 ............................ TGTTTCCGAAGTGCAAACGGAACTTTGGCGAA 38495 28 100.0 32 ............................ TTCACGCGGGCGTTCGCTTCGTCCAGCTCGGC 38555 28 100.0 32 ............................ ATCGGCTGGTCGCTGATCCCGCTGGGTTGGAA 38615 28 100.0 32 ............................ AAATCACGCCGCCCGAATGCCACTTCGGACTC 38675 28 100.0 32 ............................ TCAACTGGGGAATGTCTACTTGCGAAGACTGC 38735 28 100.0 32 ............................ TGCTCCGGAAGGTACTGAAGCGCCCAGGTCGG 38795 28 100.0 32 ............................ AGCATTCGCAGCCCTGCAATGGGGCTGCTCGT 38855 28 100.0 32 ............................ TTAAGCCTCAATCGAAGTTCCACCCGGCTTGT 38915 28 100.0 32 ............................ AGGTGCTGGCGTCGATTGTCAGCGCGGTCAGA 38975 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 39035 28 100.0 32 ............................ CTCGACGGGGCTTGGCGCACCGGCGCCACTCC 39095 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 39155 28 100.0 32 ............................ ACCGTGATTGTGCCCATGCGGCGCATGTGCAT 39215 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 39275 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 39335 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 39395 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 39455 28 100.0 32 ............................ AGCAATGCGATCCGAGGACTCCAGAACGGTAT 39515 28 100.0 32 ............................ AACTCCCGCGCCAAGGGCGCCCGCGTAGAACT 39575 28 100.0 32 ............................ GATACAACCTGGCGATGGGGAACCAGGTGGAT 39635 28 100.0 32 ............................ ATGGTGACGCTGCACGACGGCCGCCAGGTGGC 39695 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 39755 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 39815 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [39827] 39881 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49061-48433 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXFJ01000015.1 Pseudomonas aeruginosa strain AUS214 IPC236_15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49060 28 100.0 32 ............................ AACCTGCTGACACGCCTGGGCGAGGACTTCGA 49000 28 100.0 32 ............................ AATATTCGAGCCGCCATCCTGCATCTCGAAGC 48940 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 48880 28 100.0 32 ............................ ACCGGCAGGACGTGATCGAGGTCGGCGTGCTC 48820 28 100.0 32 ............................ AGATCGTGATGCCTCCTGCATGCGAGAAGGGC 48760 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 48700 28 100.0 32 ............................ TTGGGAAGTACTCAAGGATCTACGCCGCACTG 48640 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 48580 28 100.0 32 ............................ GTCGAGCAGTTGATAGAGGAAATGCGCCGACA 48520 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 48460 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGTGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //