Array 1 90630-91817 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYM01000004.1 Escherichia coli strain KS-NP025 sequence004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90630 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 90691 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 90752 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 90813 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 90874 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 90935 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 90996 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 91057 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 91118 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 91179 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 91240 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 91301 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 91362 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 91423 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 91484 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 91545 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 91606 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 91667 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 91728 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 91789 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117517-118279 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYM01000004.1 Escherichia coli strain KS-NP025 sequence004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117517 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 117578 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 117639 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 117700 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 117761 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 117822 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 117883 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 117944 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 118006 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 118068 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 118129 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 118190 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 118251 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCTGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //