Array 1 34787-32889 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSU01000004.1 Lactobacillus helveticus strain FAM 22472 FAM22472_scf0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 34786 32 100.0 34 ................................ TATCAAGATGCTCGTTATTCAAGCAAAGAAGAAG 34720 32 100.0 40 ................................ TCATTTGGACGCATTGTTGGGAAGAGCAAAACATCACGAA 34648 32 100.0 34 ................................ TCATTTGTGGATTATAAGTTGGCAAATGTTTGTA 34582 32 100.0 34 ................................ GCATGATGGCTCAGCAGTTTGTTAGATCAATTGA 34516 32 100.0 34 ................................ TGAAGTCCTACCAGCCATTCGTAGGCACGGAGCT 34450 32 100.0 35 ................................ AACGCAGAACAAGCTGCAATTGGTTTAGGTATTAG 34383 32 100.0 34 ................................ AGGTTATTTAAGCTAGCTAAGCCCAACTCATTAT 34317 32 100.0 35 ................................ AATACACCAATTGACAACATTATTTTTTAGTCTTT 34250 32 100.0 37 ................................ TTGAAGCAACGTAAGTTAGTTGAAGAGTAGGCAAACA 34181 32 100.0 35 ................................ CTGTCGGTAGCTATCTGGCTGACGATTTCGAGCAA 34114 32 100.0 34 ................................ ATATCATTAGTTAGCATTATGCTCTCACAACCTC 34048 32 100.0 35 ................................ ATGAAAAAACAACCCCAATACAGAACCCTCAAAAG 33981 32 100.0 34 ................................ AAGAACTTGTTAATAAAGTACTGCTGACCTTTGC 33915 32 100.0 34 ................................ ACAGTAACGCAACCTTAAGACACATCAAGGAATA 33849 32 100.0 35 ................................ CTAAGAGCAAACACTCATAAAACATATGTATTGCT 33782 32 100.0 34 ................................ GATTTAATGACAGCAGAAGATATGAAACTCGGTC 33716 32 100.0 34 ................................ ACCTCAAAGTGTAAACATGGGAACCTCAAAGTTA 33650 32 100.0 35 ................................ GTTCAGGTCGTTGTAATACATGGCATCATATTTGT 33583 32 100.0 34 ................................ TTGTGATACATACAATTGCTCCTTAAAACACAAA 33517 32 100.0 34 ................................ TTCAAAGCTGAAGCAAATGCTTTAGCGCCAGCAC 33451 32 100.0 35 ................................ TTTCAAAGTGAGACAGTTAGCTGCTGATCTTACAA 33384 32 100.0 34 ................................ TCACACCACTGGTTTAAGAACTTACTAGCTTGGG 33318 32 100.0 34 ................................ AAGTGACCAGAAGTTTTTTGGTGGTTTGCCCTTT 33252 32 100.0 34 ................................ AATTGATGATTTGCGTAAAAACGGACGTGCCGGT 33186 32 100.0 34 ................................ CATTTGGTAGGGGCGTGTGGATAAATAGACAGCT 33120 32 100.0 35 ................................ CGATAACTTAGTTAACAAATTTAAGGTCTTAACTA 33053 32 100.0 34 ................................ AGCTTGATTTCAGTTGACATCGACCCCATTGGAA 32987 32 100.0 35 ................................ AAAAAAGCTAAAACCGTTTTAATAAATAAAGGAAA 32920 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 29 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTAGGTCCTTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //