Array 1 1629833-1631813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZH010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA5 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1629833 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1629894 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 1629955 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 1630016 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 1630077 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 1630138 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 1630199 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1630260 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 1630321 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 1630382 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 1630443 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1630504 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1630565 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1630626 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1630687 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1630748 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1630809 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1630870 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1630931 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1630992 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1631053 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1631114 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1631175 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1631236 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1631298 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1631359 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1631420 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1631481 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1631542 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1631603 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1631664 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1631725 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1631786 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1647946-1649483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZH010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA5 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1647946 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1648007 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1648068 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1648129 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1648190 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1648252 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1648313 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1648374 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1648435 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1648496 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1648557 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1648618 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1648679 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1648740 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1648801 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1648862 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1648923 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1648985 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1649088 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1649149 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1649210 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1649271 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1649332 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1649393 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1649454 29 96.6 0 A............................ | A [1649480] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //