Array 1 231825-233010 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABL01000049.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3260_R1 NODE_2_length_359178_cov_1.39577_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231825 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231886 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 231947 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232008 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232069 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232130 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232191 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232252 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232313 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232374 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232435 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232496 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232557 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232618 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232679 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232740 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232801 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232862 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 232923 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 232983 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249680-251295 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABL01000049.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3260_R1 NODE_2_length_359178_cov_1.39577_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249680 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249741 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249802 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 249863 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 249924 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 249985 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 250046 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250107 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250168 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250229 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250290 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250351 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250412 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 250473 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250534 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 250595 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250656 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 250717 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250778 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250839 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 250900 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 250961 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 251022 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251083 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251144 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251205 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251266 29 100.0 0 ............................. | A [251293] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //