Array 1 355613-356206 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDEC01000039.1 Deinococcus metallilatus strain MA1002 497.DSPMA1002.2contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 355613 37 100.0 33 ..................................... ACGCAGGGCAGCGGCCTGGACAGCAACGGCCTC 355683 37 100.0 34 ..................................... CACCACGTCGAAGGTGGGCAGGACGTGGTTCATG 355754 37 100.0 20 ..................................... GGCGAGGAACGCGAATGCGA Deletion [355811] 355811 37 97.3 36 .G................................... TGTTCCGGGTGGTGCTGGTGGGAGTATGACAGCGTG 355884 37 100.0 36 ..................................... GGCTTGCTTGAGACGCTGGGCATAGGCCCGCCCGAA 355957 37 100.0 33 ..................................... GACGATCTCGCGGACAGCCATGACCGGGCGGCG 356027 37 100.0 34 ..................................... CGCCGCCAATCTGAACGGCATCGGCAATCTGGCC 356098 37 100.0 35 ..................................... GGCACCGGCTGGGGCGAGGACCTGGCTGCCGCGCA 356170 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.7 33 GTTGCAGCCTACCTTCGGGTGGGCTGAGGATTGAAAC # Left flank : GCGCTGGCCGGTGCCCACGCCGCCGCCTTCAGGGTCGTTGCCGCTCTCGTAGGCCATCAGCTTGGTGCGTGTCGCCTTTTTCGGCCCCAGCAGGGCACTGGCGACCACCGCCAGGACGCCGATCCCCAGCGCGACCAGCAGCATGATCACGAAATTCGCGTACTCGATGGGAGTCTCCCTTCTGCCCTTGCCCCTCTCCCCATTCCCGCTCGTGAAAAAACGCACTAAGGGTTTGAAAAAAAGAGACGCGGACCTGACGAACCGAATCTGCAACCGACTTGTGGTACGCCACAGTTCTAGCACGAAAACACGTCTCAGGCGGTGCGCGAACCCGCTGTTACGTCAGAACCCCGTAGGGTTCGCGCTCGCCTGATCTGACGGTGCAGCACAGATAAGTTCACCTCCGGGCAGGGCTCGCGGGACGCTCCTCCCTTTCCGCCGAGAGGTTCGCGCTCTGCTACGCAAAAGTTGCTTCCTGGCCGCAAAAAGGCGACACTGGC # Right flank : CATTACCGTGCTCTGCGGCCCACTGCCGCACCTCTGCGTTGCAGCCTGCTTTCGGGGCTGCCCCCTTCCCTGCCTCAGTTCAGCAGTTCCACGAAGTCGTCGTCTTCGCTGTCCTGGGCGAGGGGCAGGGTGAAGATGAAGGTCGAGCCATGGCCGCGTTCGGACTCGGCCCAAATGTGGCCGCCGTGTTCCTCGACGGCCAGTTTGCAGAACGCCAGACCCATGCCGGTATCAAAGCGGCCGTGCAGGGTCAGGCGTGACTGCTCGAAGGCGGCAAACAGATTTGGAAGGTCATCGGCGGGGATGCCCTCACCGTCGTCGCGGACCGTGATCTGCGTTTCGTCCTCGGCCTGACGCACCTGAATCTGAATCAGGCCGCCGGTGGTGGTGTGTTTCAGGGCGTTGCTGATCAGGTTGGCGAAGATGCGGCGCAGGATGTCCGGGTCGGCGCGGGTAGGACTGAGGTTCGGGGCGACTTCCACACCGATGTGCCGGTCGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTACCTTCGGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 249934-248183 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDEC01000001.1 Deinococcus metallilatus strain MA1002 497.DSPMA1002.2contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 249933 37 100.0 35 ..................................... TTCGTCCTGATCGAGGTTCGCGGCGCTCTCTTCCA 249861 37 100.0 36 ..................................... CTTCCCGCCCGTGGTGTGCAGGTGGGCGCGGTTCAC 249788 37 100.0 35 ..................................... TAGGTAGTCTCCCGGCGTGTACAGGTGCCCGGAAG 249716 37 100.0 36 ..................................... CGGCGCAGGCCAGAGCGGGGGACCAGGGAAGCTGGG 249643 37 100.0 34 ..................................... GCGCCCCGCCTCCAGCAGAAACAGGCGGCCCGGG 249572 37 100.0 34 ..................................... TTGGGCGTGTTCGGCGGCGTGGTAGGGCTTGCAC 249501 37 100.0 36 ..................................... CGGCACATACAGGAACACGCGCGGCACGCCCGGCAC 249428 37 100.0 34 ..................................... CGCAAACAATTACTCGGCCTTCCGCTGATCCCCG 249357 37 100.0 33 ..................................... TGGTAGGCGCCGAGCTGCGCCTGATAAATCGCC 249287 37 100.0 33 ..................................... GGGTGGATCGACAACCCGACCAACTCCAGCCGG 249217 37 100.0 34 ..................................... CCGAACAGTGCCCGTTCCAGCTCCACTCGCAGAC 249146 37 100.0 34 ..................................... GTGGGCTGATTCTCCACGTAGTCGCTGAACCACA 249075 37 100.0 37 ..................................... CGAACTCACGCCGGACGACGGGGAAGCATACGACTAC 249001 37 100.0 32 ..................................... TGCTTCGGGACGGCGCTTCTCGCCTCGGTGGT 248932 37 100.0 36 ..................................... ATGGGCGTTCTGTGCGGCCTGTTTCGCGGCGGCATT 248859 37 100.0 34 ..................................... GCCTCAAGAATCATGCCCGCCAGGGTGCAGCCGC 248788 37 100.0 36 ..................................... CTGCTGGCCCTGACGCCCGACCCGCAGCCCCTCCCC 248715 37 100.0 36 ..................................... AGTGCGAGCGCGGCAATGGCAATCTTCCCTGTCCTG 248642 37 100.0 33 ..................................... GCCGTGGACCTCCACCCGGAAGGGGCCGGGCCC 248572 37 100.0 32 ..................................... GCCCCTGGCGGACGTGAACGCCAACAACCGCG 248503 37 100.0 34 ..................................... GCCGCACGCTGCGCCCGTCGCTCAGCTTGAGGTT 248432 37 100.0 35 ..................................... ACGTTAGAAAGGTAGGTTGCAATTTGTTTCACGTG 248360 37 100.0 34 ..................................... CTCCGGGCACGGCTCCGCGAATTCCACGTCCAGC 248289 37 100.0 34 ..................................... ATGAGCAACACGCACCGTGTCAACGCCAAACCGA 248218 36 97.3 0 ......................-.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 25 37 99.9 34 GTTGCAGCCTGCCTTTAGGTGGGCTGAGGATTGAAAC # Left flank : CCATCCCGCACCCCACGATTGTAGAAGTCGGCGGGAGCGACATGTCCCCGCCGACCTCGACCCAGGAGCCGCCTATCCGCCGATGGGCCAGACCACCTCGTTCAGCGGGGTTACCCCCGTGTTCGCCCCGGAGGTATCCGCCGCCCAGGCACCCGTTCCACCCCACAGCAACAGCAAGCTCAACAACAGGTTTCGCATTCATTCCTCCCTATCCCCAGGCACGGAAAAACCGCGTTGGGACGCACTTGAACGCGGCCATCGCGTTCTGTCGGGGAGAATGCGGGGCCAGCCCGACACTGGCTGACGGGAGGAAAAACAGGGCGCGAACCTCCTGCTCCGTGGAGATCAGGGGAGGTTCGCGTGATGTGGCAGAAGTCCTGCTGGACGCCCGAGAGGCGATTGTGGCTCTGCGGTCAGGTCGGCAGGAAGGTCAGTGGCCCTTGTGGTTCGCGCCGTCCAACGTCAACCTTGCGTGTTGCACGAAAAGCGGGCACACTACC # Right flank : CCCTGCCTCCATGGCGAGTGGCCGCCGGAGGCTCCCGTTGCGGCCTGCCCGCAGCAAGCTCCAGGCTGAAACTTAACAGAACAGCAATGCTAGACGGCTTTTCCCTCAACTCCTGAGCGGCGCGGGGCGGCACCATGACCTATGGTTCTCCGCGCCTTTGCTGCATGGCCGCTGGCGCTGTTGCTCCTGGCGGGCCTCGGGGGTGCCCTGCCCGCCAGTATCACCCTCAAGAACATCCGCCACGAACCCCAGGGACCGGACAACTGCGCGCCGGTCACGGCGCTCACGGTGCTGGGCTACTACGGCACGCGGGTGACGCAGGCCCAGGCGGCCCGTGCGCTGAAGGACGGGCCGCGTGATCCTCAGGTCACCAGTCTGGAACTCGCCGCCTATCTGGGCCGCTTCGGGTTGCGGAGCGTGATCCGGTACGCGGGGACGCCTGACCTGCTGCGGGACCTGCTGGCGCGGGGGATTCCGGTGGTCCTGCAACAGCGCCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTGCCTTTAGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 261580-262406 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDEC01000001.1 Deinococcus metallilatus strain MA1002 497.DSPMA1002.2contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 261580 37 100.0 37 ..................................... ACTCTCGCTGTTGGTGGCCTGTTTGGGCTGCTGCGCG 261654 37 100.0 35 ..................................... TGGTGTGTGCAGGGTGACGGGCTGGGGGTGACGCT 261726 37 100.0 35 ..................................... TGGCCGGGTAGTGCGCGAAGGTCGCGCCGGTTCCC 261798 37 100.0 35 ..................................... AAGTTCATGCTGGCGAAGGCGCCCGACACCTGGGT 261870 37 100.0 33 ..................................... GTCCTCGACGCGCTTGGGGCCGACCGCGAGCGC 261940 37 100.0 34 ..................................... GGGCATCGGCACCTCTGAGGGGAGTGTGGGGGCG 262011 37 100.0 34 ..................................... AATAAGTCAGCAGCGCGCTGAGCTGCGCCCCTTG 262082 37 100.0 36 ..................................... AGGACGCTGGGCAGGCCACCTTCTACCGTGCTCCCA 262155 37 100.0 35 ..................................... GCAACAAGGCAGGAGCGAACCATGAGCCTCACCGC 262227 37 100.0 34 ..................................... GCTTTCTCTGCAGGTGACGGCGTACCCCGGCACG 262298 37 100.0 35 ..................................... TTGCCGATGTTGGTGCCGGACTTGCTGCGAGTGAC 262370 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CCTTACCTGCACCGTTGAGGGCTGCATGATCGACCTTCTGATCACCTACGACGTTTCTACCGAGACTTCCGCCGGACGCAAACGCCTGCGCCGCGTCGCCAAAGTCTGTGTGGCGCACGGCCAGCGCGTGCAGAACAGCGTGTTCGAGGTCAGCGTCACCGACGTGCAGCTCCTCGCGCTGCGCGACAGACTGCTTCAGGAAATGGACCCGACCGAGGACAGTATCCGCATTTACCGCCTCCGCCAGCCGCGCGAGAAGTTCGTGGAGGCCTTCGGACGCGACCAGTACCGCGACCTCAGCGCGCCCCTCATCCTGTAAAGCCTGCGCGAACTCCCTGTGACAAACAACAGCGGGGGAGGTTCGCGCGCTCCAAAAGTCCGGCCAGGACGCGCCGCATGACAACGATAATGGGCGCCGGAAGCCGCCGCTTGCCGCCAGGAGCGAGGTTCGCGCAGAATACGAAATGGAACGCGGGCTGGAAGGCATTCAGTTCGTATCC # Right flank : CCATAATAGGTGTTACGGGGAAGGCATCCCAGACCGGAGCAGCCTCCAACAACCCTCCAGCTCCGGTGGCCGCAAGGGAGATCCGGGAATCAGGCTAGTATGCGATACTTGCATTTTATGTAGAAAGCGCATAAACTCCTCTTGGTATGAATGTGCTTGCCAGACGGACTCTGCTCAAATTTGCCGAGCAGTACCCTGAAGCCCGCGAAGCTCTCCTCGCCTGGGAAACCCTGGCGAGAAAAAAGAACTTCGCCTCGTTCGCGGAAGTGCAAGAAGCCTTCGCTACGGCCAGTTGGGTCGGCCCCGACTACGTGGTGTTCAACATCAAGGGCAACCACTTCCGCCTGATCACTACCGTGGATTTCACTTACAAGATGATCCGGGTCAAGGAGTTCATGAGGCACTCGGATTACGACAAGTGGAAGCCCTGAACCGAACTGAATGCCTGGCCCGATCGGCGGGCCACCCCCTCGGGGGAGGTGAACTGAATGTCTCTCAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 116560-115616 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDEC01000041.1 Deinococcus metallilatus strain MA1002 497.DSPMA1002.2contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116559 29 96.6 32 ............................T TTGCGTGTCCAGCACGGTCAGGCCGTCAAGGA 116498 29 100.0 32 ............................. CGAGGGAGGCTCCCTTGAAGCGTACCAAAAAC 116437 29 100.0 32 ............................. CAGGTTTCACCCGCCCGGTCCCCAGGAGCGAC 116376 29 100.0 32 ............................. CCCCGCTGCCCTATTTCCCCATTCATTAAGAC 116315 29 100.0 32 ............................. CCGCGCGTACTCGTCGGGGTAGGTGTCGGGGT 116254 29 100.0 32 ............................. TCCAGGTCAACGCGAACGGGCACGCTCAGGCC 116193 29 100.0 32 ............................. TCCCATATCGGTGTCCTTTGGCCCGGTGTTCG 116132 29 100.0 32 ............................. ACTGGAGTACGTCTCCCCCGCTTCCAACTGGG 116071 29 100.0 32 ............................. GGCGGCGCCCCCAGCGCCACGGCGGCATGGAT 116010 29 100.0 32 ............................. CTGTCGCCAGTTGCAATACCGCCACGGCATAC 115949 29 100.0 32 ............................. GCGCTCACAGGGCACCCCCTTCCGCCTGGGCC 115888 29 100.0 32 ............................. TGGGGCAATCCGCTTGACCAGGGAATTAATCC 115827 29 100.0 32 ............................. GCCAAGCCCGTCATCACCGCCGTGCGGGACGT 115766 29 100.0 32 ............................. TTGTCGCGCAGAACCTGGCCGTGAGCGCCGAC 115705 29 100.0 32 ............................. GATGCCTTGCAGGGCCGCGAGGACGCTGCCCA 115644 29 79.3 0 .....................CC.CTG.T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCACAGGTGTGGGGATGAACCG # Left flank : GCGGACCCCACCCCGGAAGGCCCGCGCCACGGCACGCGGCTGGGCGAGGAGAACTTGCGGATCGTGCCGGTCCATTGCATCCAGCGCGGCCTGTTCCTGGATGAATGTGCGAACCACCCCGCACAAACCGTCACCCTCAGAAAAGACGACTGGGACACGGCCCGTGCGGTGTATGCCCGCAGCCTCCAGGTGTCCCGGCACGACCTCCTGCGCCACATGGGCGCGCACCACGACCGGCACGGCGTCAGGCTCGGCACGGCGCACGTCGGCTGGGCCGCCCATCCCCTCCTGCGCGACGTCCAACCGCTGGTGCTTGTGAATGGCGAGGCCACGCTGGGAAACACTCGCGTCCGCCTTGACCCGGAACTCGGCCTGACCTATGAGCGGCTAGACTGAGTCGGGGTCTGTCCCCCGCGCCGCATGAAAATGTAAGCCAATTCCAGACCGTGTGGAGGGACTTGCGGCAGGGTGAGAAGCGGGCGACCTTGTGTTTCTGAAGT # Right flank : GGTCGCCTTCGATCCGTGGAAGCCGCGTGACCCGGTGGAGCGCTTCAACCTGGCACAGGAGCAGGTAGGCCGTCACTGCCCGCTCGGCATGACTCGGCAGCCAACTGCGCCCGCGTGTACCCCTGTTCGAGCCGTGCCCTGACCCAGGCCTCGTACCATTACAGCAGCCCGTGCCTGAGCAGCTCCTCTTCCGTCCAAACGTACCCTTGAGGCTCGCCCTGCCCCGTCATCCTGGTCGGTCCTCTGCGATATCGGTGAGGTCCATCGCCCGCAGCTCCGGAGCGAGGTACGCCGTCACGCCCACCACCAGCAGGGTGACGATGCCGCCCAGCCACACGCTGCGCGCGGTGCCCAGCCAGCTCGCGGCCAGCCCGCTCTCGAAGGCGCCCAGTTCGTTGCTGGCCCCGATGAACATGCTGCTCACCGCGCTCACCCGCCCGCGCATGTGGTCGGGCGCCTTCAGCCGCAGCGTCGCCTTGCGCACCACCATGCTGATGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129806-130993 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDEC01000041.1 Deinococcus metallilatus strain MA1002 497.DSPMA1002.2contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129806 29 100.0 32 ............................. CTCTCTGGTTTCGACATCGCGGGCATCAACGG 129867 29 100.0 32 ............................. CTGCTGACATCGGCGTGCATGTCCATGTAGTT 129928 29 96.6 32 ............................T TTGAGGTATTCAGGGAACGTGGTGGAGTTCCC 129989 29 100.0 32 ............................. GGGCCTGCAAACACGCGGGTGGACCAGCACAC 130050 29 100.0 32 ............................. ACCTGGAGCTGATACAGCCGGGCGCCGGGAGT 130111 29 100.0 32 ............................. CTTGCGCCCCTGCCCCCCGTGTTCCCCCTCCG 130172 29 100.0 32 ............................. GCGTTGTTCCTGGGAGCTTTGGGGCTGTCCCC 130233 29 100.0 32 ............................. GCCAAATAAAAAGCCCCCGCGCCGCCAGCCGA 130294 29 100.0 32 ............................. TCCGACCGGTGCGGCATGTCCCAGAGGCAGAC 130355 29 100.0 32 ............................. GGTTTGTAATTGCAGAGAGCTTGCAGGACGTG 130416 29 100.0 32 ............................. GGCCGCCACTGGCAACTGCTCCCCCAGGAACA 130477 29 100.0 32 ............................. TACTGACATGATTACAGAGGCTATCGTGGGTG 130538 29 100.0 32 ............................. TCTTGCCCTTCCGGTCCCCCATTTCCCAGTCC 130599 29 100.0 32 ............................. ATCGACCGGACGCGGCCCCAGAGGAAGTAGAA 130660 29 100.0 32 ............................. CCAGTCGTGCGCCACAGCCTGGGGGCGGTAGG 130721 29 100.0 32 ............................. GCCATCGGGGAACACGACCTCGCCCGCAGGCT 130782 29 100.0 32 ............................. GCCCGCAGCACGGCGGACCTCGCGGGCGGCGG 130843 29 100.0 32 ............................. CGTACCGCCACGGTAGCCCAGCCGCACGGCGT 130904 29 100.0 32 ............................. CCGCGTGCGATTCGCCACCTCGGTGTCCTCCT 130965 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCACGTGCGTGGGGATGGACCG # Left flank : TCACCACCTCCTCGGCGGAGACGAACCGGACGCCGACGACCTCGCTCCGGGCGACCTCTGGGACCCGGAAGGCGACGTGCGCGGTGGGGTGAATCACGGATGATCGTCATGACGCTCGAAGCCGTGCCGCCCTCCCTGCGCGGCGAACTCAGCCGCTGGCTGCTGGAAGTGCAGCCGGGCGTCTATGTCGGCAACGCCTCCGCCCTGGTCCGTGACCTGCTGTGGGACAAGGTCGTGCAGCACGCCCGCACAGGTCGCTGCACCCAGCTCTACCGCGCGAACAACGAGCAGGGCTTTGCCGTCCGCCTGCACGGCGACCCGAAACGTCGCCTGGTCGAACTGGACGGCTTTCAACTCATTGCCGTCCGCAACGCCCGTCATGCAGAATTGGACCGGGAGTATGCCCCTCCCGAGGACGATGACAAATTGTGATGCGGATCCAGGGCTGAACAGGGGCCTTGGCAGGGGGTGAAGCGGGAGAAACATCGTGTTTCTAAAGT # Right flank : GAAGCCATCCCGCAAGTGCTTGCCCATAAGTTCGACCCGAATCTCCCGCAGCACTGTCCTCGCCCACTCGGGTGCTGTCTCGAGGAACGCCCCCAGGGCCTGATGCAGACGCCTCAGGGCCTCCAGACCCTGCTCCAGTTCTGCGGCTGACCCGGGGAGCGGCATCTGCGGGTCAGCCCTGCTGCCTGCACCCAGGAGTTCGCTCATGGGCAAAGCAGCAGCAACCCGCTGGTCATCGTAGATAGGCGTGTACACCTTCACTCTGAAGCTGGCGTCGGCATGTCCCAGCCAGTCCGCCACGACCTTGGGCGGCACGCCCGGCGGCTCAGTAGATTGGCCGCCGGGCGCCGCTGCACCGGCTTCGCCTTGGGGAGGGTACGCAGCAGCGCCCGCAGGACACGTTCCGCCTCCTCGTGGGTCTTGCAGCTCACCGACCGGCGGCGCTGCTTCCCAGTGACGGGGTCCCGGTAGCTCGCCAGTCCCCGGGCACTGACGACGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 338307-337761 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDEC01000041.1 Deinococcus metallilatus strain MA1002 497.DSPMA1002.2contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 338306 37 97.3 35 .....................A............... GAGAGATGATCCTCGACGAGGCGCACCAGCTTCAC 338234 37 100.0 32 ..................................... TCTGGGGTATGAGCCTCAAGGCGTCCGAGGTG 338165 37 100.0 37 ..................................... TCGCATATCTCCAGCAGGCCGAGGAGCTGGCGCGGCT 338091 37 100.0 36 ..................................... CCCGGTGAGCGTGCTGTGGGAACTCGACCCGGTCCA 338018 37 97.3 40 ......................C.............. GTCAAGGGAAAGAACGTCTCCGGCCAGTACCGCGCCCTGT 337941 37 100.0 35 ..................................... GGCGTGGAGCCGTGGCCGGGGTCGAGGACGATGAT 337869 37 100.0 35 ..................................... GACCTGAACGCCCGCCAGCGCCTGTACCTGCTCGC 337797 37 94.6 0 G................T................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 98.7 36 CCTTCAACGACTTCCCCGATCGATAGGGGACTGAAAG # Left flank : TCCACGTTCACGCGGGGCTGGCCCTGTTCACCCGCGCCCACCACGTACTGCAAGGGATTGTTGCCGCCCTTCGTGACCACCAGTAGCACAGCGGCGGGCGTCACGTCGGTATAGTGCAGCGCCTGCTTCGCGCCGCCGCGCAGTTCCGCCAGAGCGCGAATCAAGGGGGCAATGCGCTGGGTGCGCGAACTCTGGCTGGAGGACGCATGGCAACTGCTCCAGCGGTACGGCCCGTGACCGCAAGAGGCGTGGCTGCCGTCAGGGTCCGGCGATTTGCGAGGTGTCCTGGTGGGCCTTTTCAGGGGAGGCCGCCTCTGAAGGCTCGCCCTGTCGGGGCTGGGCAGGCAAAGCCACGTCCTGCACGCACCGCAAACCGGCGAGTCCGCAGGTTCCCCTGGCTCTTGCGAACACCACCAGCGGGTAGAATGAATGCCGTCCTCCACAGCGAGGCGAGCCGCATGACAACTTTCACCCTCCCCGAAAAGAGCGAGAAATACGCG # Right flank : TGGCGCCGGTTGCAGGTTCAGGGCCGGGAGACAGGCTTCAACGACTTCCGAGCGTTAACACCGTGATGGCCATTGTTCGGCGCGCCTGAGTGGCCCAATCTAGCGCCCCAGAAAACGGTGCACCTCGCCCAGGCCGGTGGGGCCCAGCAGCACCTCACCGCTGGGCCGATGAAGCAGCATAGGGGTAGCCCGGATACCGTACGCCTGGGCGAGGGCCTCGAACTCGGCCGGGCGCTGCTGGCGATGCACGACGTCAATCTGTTCCGTGAATTGCCCCTTCAGGGGGCCAGCCAGCATTCGCTCCAGGCGCTCACACTGGGGGCAGTGCTCCTGGGTCAGCAAGACGAAGGGGCGCTCAGCCATGCGGCACCCGCTTGGCCTCGCCGGGAAAGCCGCCCGCCCACAGGTCCGCGATATCCCCGTCCGTCAGGGGTTCCACACTGATCTTGGCGTAGCTGCTGCCCTTGGCGCTGAAGAAGTCATGGGTGGTGCCGCGCGCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGACTTCCCCGATCGATAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //