Array 1 163411-161063 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNF01000029.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015018 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163410 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163349 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163288 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163227 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163166 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163105 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163044 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162983 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162922 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162861 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162800 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162739 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162678 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162617 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162556 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162495 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162434 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162373 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162312 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162251 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162190 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162129 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162068 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162007 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161946 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161885 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161824 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161763 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161702 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161641 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161580 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161519 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161458 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161397 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161336 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161275 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161214 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161153 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161092 29 93.1 0 A...........T................ | A [161065] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181778-179918 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNF01000029.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015018 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181777 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181716 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181655 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181594 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181533 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181472 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181411 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181350 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181289 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181228 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181167 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181106 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181045 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180984 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180923 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180862 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180801 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180740 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180678 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180617 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180556 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180495 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180434 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180372 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180311 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180250 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180189 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180128 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180067 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180006 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179945 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //