Array 1 979510-979842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019189.1 Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 979510 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 979571 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 979632 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 979693 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 979754 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 979815 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 995986-998274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019189.1 Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 995986 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 996047 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 996108 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 996169 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 996230 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 996291 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 996352 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 996413 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 996474 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 996535 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 996596 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 996657 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 996718 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 996779 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 996840 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 996901 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 996962 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 997024 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 997085 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 997146 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 997207 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 997268 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 997329 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 997390 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 997451 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 997512 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 997573 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 997634 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 997695 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 997756 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 997817 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 997878 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 997939 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 998001 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 998062 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 998123 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 998184 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 998245 29 96.6 0 ............T................ | A [998272] ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //