Array 1 23820-22918 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOR02000015.1 Leptospira weilii serovar Topaz str. LT2116 ctg7180000006681, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 23819 29 100.0 32 ............................. GAAATTCTTTTGGATTGGTATTAGACAATCCA 23758 29 96.6 42 ............................T CTACAATAAGATTTAAGTCTTATCCAAAGCTTGAGAATTCTG 23687 29 96.6 42 ............................T CTACAATAAGATTTAAGTCTTATCCAAAGCTTGAGAATTCTG 23616 29 100.0 32 ............................. TATATGCAGTCATTCGCAGAATCGTAGGCCAG 23555 29 100.0 32 ............................. AAGAGAGCAACTTACTAAAATCCTTTGGCGTT 23494 29 100.0 32 ............................. GATGGCGTTCGATACAGCGTCGTAATCCCGAA 23433 29 100.0 32 ............................. TCCGCGATCCCTATCAATGCGGAATGTTCGGC 23372 29 100.0 32 ............................. GAAGGTTATTTGTCATGATATTGTTGTAGTAT 23311 29 96.6 32 ............................A CCTTATTCCGTATAGCTTTGAAGGTTATTCGT 23250 29 100.0 32 ............................. AGGTCATCGATCGTAAAGATTTTACGTTGTTT 23189 29 100.0 32 ............................. TTCCGCGTCAGTCCAATTTTTGAGAGCCGTTT 23128 29 100.0 32 ............................. AAATTATAGTTGAAGAAAAAGTCCAAACTGAA 23067 29 100.0 32 ............................. GAAGGAGAGAAAAGAGATAGGAAATAAACTAT 23006 29 96.6 31 ............................C GAATCCTTCCTCTCGGGAATGGATCGAGTTT 22946 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ========================================== ================== 15 29 98.9 33 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GAACAATTACTTTTTGATCATATAGAAGTTTATTATAATCGTCAGAGATCACATTCCTTTTTAGGTTATGTGAGTCCTGCTCAGTTTGAAGAAAAGGTAGCATAAAAAAGTGTCCACTAAACTGTCACTAGGCTAGAGTCACGAAATAGGCGGAAAGGCTCGGGAGATTTTTCTCTATCAGAAAATCATACTTCTTGCAAGTAAAAAGTCTCATTCTTGTCGGAACACTTGAAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCGAGCGTTGTGCCTGAGTTTCATCTAGCTTCATGATCTTCAAACACAGAAGTTCCCGCACATAGAAGAACTCAATTACGGGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGACGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAGC # Right flank : TAGCCAACCCACAAGTAATGGGATCTCAAGATCAACTTGCCGGAATTACGACAAAATCCCCCGTTCCCACCCTTATTTTTGGGTGGGATGACGAGCTCTGCTGCAGAGCGAGGCGCTGAGTTTGGAGGCGGAAAGACTCGGGAAATTTTTCTCTATCAGAAAATTATACTTTTTGCAAGTAAAAAGCCTCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCTAAAAGCCTTCTTAATTTGTGGGGTTGGTTATAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCATCTTTTACCGGAACAGGTTCGATGATCTTTGGAACGATTCGGACAGGATGCTTGCGGCGGTTATACGAATTCTTCTTTTTACTACCATAACAGTTTTTTGATCGCAGATTTTCGAAATGCGTTCGTGTTGAAACCGCGGGAAAGTTCCGGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 142383-142171 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOR02000061.1 Leptospira weilii serovar Topaz str. LT2116 ctg7180000006713, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142382 29 100.0 32 ............................. AGTCCGGCAATAGAAATACCAGCCCTTTCGAA 142321 29 100.0 32 ............................. AAATTGATCCTAACGAAGGATCTAAGGAGCAC 142260 29 100.0 32 ............................. GGTTTGTGGATGCGGCCACTCAGGTGGATGGA 142199 29 93.1 0 ..........................G.T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TAGTAAATTACTTAAGAGAATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGGGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTCGCCTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCAATCATGTTGTATTCAAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGGGAGATTATAGACTTCGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGTCACGAGTATTTCCGACTTTTCTATGTCCACTGAAAATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCTAATTCCCTTCGTTTAGAAACAGATGATCAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTCTTAGC # Right flank : GGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAACCTTTTTCACATGTTAAATTAATGTGAGTTCAGTATAATAAAATGCGAAAGCGATTCTATGTTTCGACCTGAAACGCGATCCATAGAGAGCGTTTTGCTGAGTTTAGGAAGAAACACTTTAGTTAAAGAACTCAATGAAACGCTTTTTACGAAAGCGTTAACTCAGCGTCTCACTCCCTGAATGCCGATTCGCAAAAGAGGCATTCGCTGAGTTTCCTGGGTCGTTCGACAAGTCGCGAGCCATTTTATCTATGAAATTCGCGAGCTGTTGCGACGACCCGCAGAACGACCTTTAGGAAAGCTCTGCGCCTGAGCTCAGGAAGTCGTTGCACTTTAGTTTCTTATTCGCCCAAACTTTCTTACGCCGAACTCGCGTTAAATTACGAACTTAAACGATTGTGCAAGTAACTTAACCTCGCAAAATCCACTAAAAGATAAGCTGGAAAAATCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18958-18746 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHOR02000006.1 Leptospira weilii serovar Topaz str. LT2116 ctg7180000006661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18957 29 100.0 32 ............................. AATCTCGAAACGGTGCATTGGGAATTTATCTC 18896 29 100.0 32 ............................. GCGACCACCCACAAACCCGTAGGGACATTTAT 18835 29 100.0 32 ............................. CCTCCGCTTCAGAAACGCCTTCGGGAGGAAGA 18774 29 86.2 0 ........................G.TGA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTCTATAAAACAAAAACGGATGGAATATTAATTTTTCAACAATTCTACTTATCTCCACATAATAGAGTGTCCAAAGTTCCGCATCTAAACGCGGGGTTTATGCTCAAATGAACGGTACTTTATTTTATAGGATCAGTAATATTTTTAGACAATCTGCTTAGAGATTTTTTGCACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTTACTCTTTTCAATTTTGTTTTTGGCTACTTCCCTTTTTTTCAGCAGAAAAAAAGTCAATATGCCTCAGATGTTAATTGCTAGTGACAAATCTTCAAACACAAAAGGGTTACGCCCCACCGCATATCTATTGGGCTTGATTACGGTTACGTTTCCTTAGAAGCAGACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGATTCGAACACAAAAATAGATTGCAAGAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : AAAACAGAATGGATTTTGATTTAAAACCCTAACAACTAACATCTTGAAACGCACACGTGGGTTAAAATTTTCAGTCAAAACAAATAAAGACGAAATAGATGAGTAATAAGAATTCGAAAACAGAATCCAATTTAGAATTTTCAATGTAAAAAAGCTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCTCACCAATTTTAAACAAGAGGGAAAACCGAACAAAAGAGGTATAAACTCCTAAGGACATAATTTGTGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTTGAGCCGAGTTCTAAGACAAACACAATACGGGATTAATTCAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGGGATACCTTCCAACCGGATTCGGTAATTTTCACAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //