Array 1 12550-10424 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXZ01000090.1 Thermoanaerobacterium thermosaccharolyticum strain A1 Contig_90_1352.99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 12549 29 100.0 36 ............................. TTGTATATTGCCCGTTTTGCCATGTATGAGTATCTG 12484 29 100.0 37 ............................. TCATAAGCAGTTATCTTCATTTCGCTACTTGAAATAG 12418 29 100.0 36 ............................. ATATCGACGTTTTTTAAACGCTTATGGTCTAGCATT 12353 29 100.0 36 ............................. TTTTTAGTAAGCACCGCAAGTGAAGCAAACAACTCT 12288 29 100.0 38 ............................. ATGAAAGACCAAGAAATCAAAGAAGCCAACACGGGCTC 12221 29 100.0 35 ............................. TACAACACCAATTATAAGAGCAAATATAGTTGCAA 12157 29 100.0 40 ............................. AATTTATAGTTGGGACTATGGAAGCGAATTTGAACAACTA 12088 29 100.0 37 ............................. GATGAATTTATATTATTTATGAATACAATTAGCACAA 12022 29 100.0 37 ............................. GTTTTAATAGTGCTCTCAACTAATTGCTCATCATTAA 11956 29 100.0 36 ............................. GACATAGCACCTGCTGATACAACAGCATTTGCCACA 11891 29 100.0 36 ............................. CTTAATGAATGGGTCAAGTGGAGAACAGGTGAAGTA 11826 29 100.0 36 ............................. CAAGCTTGCCAATATGGTACTGTATCAAAGTTTTTC 11761 29 100.0 36 ............................. AATAAAAAATTTTATAGTGTAAATTTTATAGTAGAA 11696 29 100.0 36 ............................. TTTTCTAATAAGTCAATGTCTTTTATATAATAATAT 11631 29 100.0 36 ............................. GTCTCATAACGAGGAAGATTTGTGTTTACAAGTGTA 11566 29 100.0 38 ............................. TGCTATCCAGTATCAGCGAACCTATTTGCGCATAGCTA 11499 29 100.0 36 ............................. TACCATTCTTAAAACTGTTATTTAAAAATTGTTCAG 11434 29 100.0 35 ............................. TTGCATTATAGCTTCAAATGTCTGTTCTTCAAACA 11370 29 100.0 37 ............................. TGTATTCTTAATTCAATACTTTCTGGTGTTGTTTCTG 11304 29 100.0 37 ............................. TTTATGACTTGTTCTGGTCTGTAACTATTCATCTAAA 11238 29 100.0 36 ............................. TTGTTAGTGGGTTGTGGATCATCATAATGGCTACAG 11173 29 100.0 37 ............................. TACCACTTTATGCGATTTTGGGTCATGGTGTGGGAAT 11107 29 100.0 37 ............................. ATGAATGGGGATTATGATGCGATTTCCGTAGGCGATT 11041 29 100.0 36 ............................. TAAAAAAAATAATAATAATTGCTTGACAAGTATATA 10976 29 100.0 36 ............................. TCTTGAAAAGCAACTAATGTACTAAATGCTATTACT 10911 29 100.0 37 ............................. AACATACAGTGTGTCATCTCTTTTTTCTCCGTCTGGC 10845 29 100.0 36 ............................. ATCATTGAGAGTATATTAGAATTATATCAGAAAAAA 10780 29 100.0 37 ............................. TGCAGTAGAAAAAGAATTTGTAAAGTATACAGGCGTA 10714 29 100.0 38 ............................. GATTTTTGCCCGCAATGTTTTTATAGCACAGATTCACC 10647 29 100.0 36 ............................. GCGGAGTCTATTAGTTTTTTATATCTTCAACCTCCG 10582 29 100.0 36 ............................. GTGAAGGACAAAAGACAAGCATGGAACGAATTGATG 10517 29 96.6 36 ................G............ TATTTTTTCTCTAAAAATTGCAGAAAGGCATATACA 10452 29 93.1 0 ................G...........A | ========== ====== ====== ====== ============================= ======================================== ================== 33 29 99.7 37 GTTGCATCTGAACTATATGGGATATAAAG # Left flank : ACAAACCTTTAAAGGCGTGGTGGTAATGGCTTATGTAATAGTTACATATGATGTATCTGAAAAGCGTGTAAATAAGGTCCGAAAAAAGCTAAAAGAATATCTTGCTTGGGTTCAAAATTCTGTCTTTGAGGGTGAAATATCTGATGGCAAGCTTGATAAATGTAAAAATGAGCTTTTAAAGATTATTAATAGAAATGAAGATTCTATTTATTTTTATGAAATTAGGTTTAAAGATAATTGTGGCAAAAACATATTGGGTATAGAAAAAGATTATGATTCGAACATATTATAATTGCAGCAAAGGTATTCTTAAAGAAATTAGGCTTAACTATGCATGAATAGTAAATATAATGCTATAATTATTATAGGTACTAAAAACCTATTGTATCCTTGCTGCAAAAAGTTACGATTTAAAGTAATAATAAAGCTAAATAAAAGTATTGCCTAAGCCAATAATATAGTACATTTGAGGCAATATATTTTATGTAAAAAAATCTGGG # Right flank : ACTGGTTAGTAGTTATACGAAAGGTTGATTTCGTATAATTATGTCGCTTACAAATTTATTTATCAATATTGTTAAAGATAACAGTAATTTATTAGAAGATAAATATATTAGAAAATGGTATCTATTGGCGAAAACTATGTATAAAGATTTTAAGACAAAGGAAAATAGTTTTCAGGAAAGAAAAATAAAAAATTATAAAATGTGTAATTTTTACAATAAAAATTTTAGCTGGAAATAATTTTGTGTTGAATTTTTATAAAGAAGGAATCTGCATGATTTTGTAGAATTAGAAAGTAAGGCAATTAAAATTTACAAAAATATATATGCTATAAAAAATTAAGGGACATGTGATGCCTTTTAAATTTGATAAAATATTTATATTAATGAATAAAAAGTATTATTCTCAAATAAATTATAGGAGGAATGATAAATGATGATAGGCGAAAACAGGGCATTAAAAGCTTATAATTTTTATAAAACGAATAAGCCTTGTATATTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGAACTATATGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 60700-59804 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXZ01000032.1 Thermoanaerobacterium thermosaccharolyticum strain A1 Contig_32_1675.57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================== ================== 60699 30 100.0 36 .............................. TCTTCATTTTGGGATGCACTACTATCTTTTGTATAT 60633 30 100.0 35 .............................. AAGTTCTTAACACATCTAATTCAATATCAATATCC 60568 30 100.0 40 .............................. TTAGCAAACGAGAAAAAACAAGAGCAAGAACAAATTAGGC 60498 30 100.0 36 .............................. AGGTATAAAAGTATAAGCAAATAAAAAATAAATAAA 60432 30 100.0 35 .............................. CCCGAATGGGTAGTAGGGCTATTTTTTTGAAGGTG 60367 30 100.0 36 .............................. TTAACAAGGCTTTTATTCATAGGCCTGTGGACAATA 60301 30 100.0 37 .............................. AAAGATAGGGGGATATAAATGATTACACCAATGCAAT 60234 30 100.0 37 .............................. TTTATATCCTTTATTAAAACTTAGACCAAACCCGTAT 60167 30 100.0 37 .............................. AAGAAAGAAAAATTTATCTTATACGAAATGGCAAAGC 60100 30 100.0 37 .............................. AGGTATTCTTTTATGTCGTCGTATTCTTCTTGAGTAA 60033 30 73.3 170 A..A........T....A...T.C...G.T ATAAAATTTTGGAGGAGTAAAAATGATGCCTTTTATTCCGAAAGAACTTGCACCGTATTTAATTATTGTAGAAGATGGATATAAATTAAAAGAATGTGCACCTGATAATGTTAAAAAGATGTTCCTTGTGTGGGTTAAAGAAGTTAAAAAGCTTGAATCAGAACAAGTTA 59833 30 76.7 0 ......GT.....T...A.......C.C.T | ========== ====== ====== ====== ============================== ========================================================================================================================================================================== ================== 12 30 95.8 49 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATCAAAACCGTAGCAACATCTATATG # Right flank : AAGAGTGGTGAGTTTTTATGTAAATAAATAAAAAATTAAACAATGATATTGTTGGGCTAAAAACGGTAGAGAGGGCACTATTCTGAAAATATATGACATCAAAAATTTATCAATAGGCTATTATGTAGAGTTATCCGAACATGATGGTGAAATAATTACAGTAACAGATGAACAAATAGATAAAATTATATGGGAGATGCCTCAAAGATTTTGATTTGTTATGTAATAAGTGAAAAACATTTTTATGATATAAAACATATATACAAGAAGGTGTTCTTATGTACGATGAAGTTACAGGCTCATTGATGCAAAGTTATAATATATGCAAAAGGCAGGTATGGCTCATGGCCCACCAGATAATTCCTGACCAAGAGCACCCATACATTGAGATGGGACGTTTGATCGATGACATATCTTATGACAGGGATAGAAAGAAGCTAAACTTTGAAAATGTTGTTATAGATCTTGTGAGAAATGACAATGGCAACCTGCTAGTAGGG # Questionable array : NO Score: 7.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-1.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 113745-115037 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXZ01000121.1 Thermoanaerobacterium thermosaccharolyticum strain A1 Contig_121_1181.72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 113745 30 93.3 36 ........A....................C AAAGGAGATTTATCGCAAAAAGATTTTTCAATAAAA 113811 30 100.0 38 .............................. AAGGCACATATAACATCATTCTCAAAATCGTCTGTTAC 113879 30 100.0 36 .............................. TGGAATGGGCATTTAACAAGCATCTTATTGTGTCCT 113945 30 100.0 36 .............................. GGACTGAATGTGCTGGCACCTGGAACACCGAGAGCT 114011 30 100.0 36 .............................. CATACAGTGTCACTCACGTTTGTAAAAAGTTCTATA 114077 30 100.0 36 .............................. AATAACAAGAAAGGAGCCTGAAAAACTACCTGAAGT 114143 30 100.0 37 .............................. TCAGAAAGCTATCGGATATATCTAAAAAATTAGAGAA 114210 30 100.0 37 .............................. TAAACTTGTAAACATAACATATTTACAATATCTTTAT 114277 30 100.0 35 .............................. TGTTCTTCCCATACGCCTTCTTGAACATCTACCAC 114342 30 100.0 38 .............................. AACTTTACTACGAATTTGTATTCGCTTGGATATTCTAA 114410 30 100.0 37 .............................. TACGATCCGCCTTCTTCTTTAAATATCCACTCTGAAA 114477 30 100.0 35 .............................. TTTATGATGCATTAGCACCGGCAGCGCTAGAACTT 114542 30 100.0 36 .............................. GGTCGTGTCATGAACCTACACGTCCTACTGCTATTT 114608 30 100.0 36 .............................. AATCGTGATAGTATACTAACGCTACAACCTACGTAT 114674 30 100.0 38 .............................. CGCTAATCAGGCGGTTAAAATTTTAAGATAGGAGGAAT 114742 30 100.0 36 .............................. TACGATCCGCCTTCTTTGCCGAATATCCACTTTGAT 114808 30 100.0 36 .............................. TTTTCTTTTTAAACCTTTTTAAATCCTCTATGAATT 114874 30 100.0 37 .............................. TTGCCAACGATCTATGATATCCGTCGAGGATATCAAG 114941 30 100.0 37 .............................. TCTTCTTTAGGAGGTTCAAGTTTGTAGCTTTTAGTTA 115008 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.5 37 GTATAACCGAAACATATGATGTATTGAAAT # Left flank : TATAGATATAATGACAAAATTTCAAGATAAAAATTTTGAAAGTATTTATGAATTAATATTTAAGGTTTTGAAAGTCAAAAGTGATAGATTAAATAGAGATAACATAAAATATTTATTTGAAGATTGTATGTTAATGAATTATAGAAAAATATCAAAAATTATGACTTTGATTGAAGGAAATGTTCAAGTATTTTTAGCACATAGAATTAAAACGGAAAATGGCATAATTGATGGTAAGGATGTATGGAACGAATACAAGCAATTGTTAAAAAATAGTGATATGCATTATGCTGAAAAAGCTGTAAATATATCACGATTAAAAGAAAAAATGTCATATTTTACGTATAATGTTTGTGGAAATATTGAAATAAAGTGCGATGAAGAGTTTGGAGGTTATTACTATATAAATGATGGTGATAGATTTATTGATGATGGAAAATTTGACAGAAAGAAATTTTCGAGTACTATGGGAGGTATGTTTTTATAATGATAACTGGAAC # Right flank : TAAATAATTTTTTAAAACAGGCTTAATGCCTGTTTTTTTTATGCCTGAAAAATTTTAAGAAAGGAGTTTTTGATATGGAAAATGAACTTAATAGAATAACAGAAATGTTAGACGTTAATTTACTTAAACCACACCCGCTAAATAAAGTTTATTTCGACGACATAGAAGGACAGGCATGGTTAGACTTTCTAGAAAGCGTAGAAACAAGCGGAATAATAGAACCACTAATTGTAACTAAAAGCTACAATAAAGAAGATGACACAGACAAAAACATAGAAATTACAGAAATGACTGAAGAAGAACTAAAAAACTGCTATATAGTTGTGGCAGGACACCAAAGGTTAAGAGCAGCGAAAGAATTAGGCATTACTAAATTGCCATGCGAAGTACATGAGTACGTAGACAAAAACGGTATTACTGCAAATGATTGGATTTTAAAAGAACTTATTGAAACGAATTTAAGGCAGCGTGGCAAAGGCAATTTAAACGACATGAAATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAACCGAAACATATGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 25058-24096 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXZ01000061.1 Thermoanaerobacterium thermosaccharolyticum strain A1 Contig_61_1536.53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 25057 30 93.3 37 .................G...G........ TTTTTCATCTGCTCATCTTGCTCTAATACAGCTACAA 24990 30 93.3 36 .................G...G........ AAAGTAAAGGGGAATAACAAATGATACAAGCATTGA 24924 30 93.3 37 .................G...G........ CATGATTTGGGATAGACGACAAAATAATAGTATGTGA 24857 30 93.3 39 .................G...G........ GGTTAATACTGGAACAGATACAGCTCCAACATGGACAAC 24788 30 93.3 37 .................G...G........ AATGCTTAACAGAAATAACCAAGGAGGCAGGATTCGA 24721 30 90.0 36 .................G..AG........ TATATTTATCCATGATCTTTTTGTCTATGTTGCTCG 24655 30 100.0 35 .............................. TTTTCTTTGTCCCACCATATCCAAGTAGGTTCCAA 24590 30 100.0 36 .............................. TAAACGGTCCACGTAACCCATTGGCAGGCTTGATAA 24524 30 100.0 37 .............................. CCTTTTAAGACATTTGCTTATGTTGAATATTGGATGA 24457 30 100.0 36 .............................. ACAATATACACAAACATAACATTATCAAAATCTTTT 24391 30 100.0 37 .............................. TTATAACGTCCTCTTGAGCTTTAAAAGGTTTTGTTTT 24324 30 100.0 37 .............................. AGACCAAACATATTTTTTATGTCGTCAGCAAGTGAAA 24257 30 100.0 36 .............................. TTCACAAATAAACTGTCAGTATCACAATAAAATACA 24191 30 96.7 36 .................G............ CTGTATCAGCATCTATAGGATTTTGCTCATTGCGGT 24125 30 76.7 0 .............A...G...G...T.TTT | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 95.3 37 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATAGATTTAAGTGAATATGAACTTTGGAATAACGGAAAGAGCATAAGTTTAACTTGATATGAATGCCAGATAAAAAGTTCTATACGAGGAGGGGTATATATGCCACTACCGAAAGAAAATAAGAAATATACGTATGCTGATTATTTGACGTGGCCAGAAGGAGAAAGGTATGAGATAATTAATGAGGTACCATATATGCAAGCAGCACCGACATGGCAGCATCAAGCGGTATTATACAATGTAGGTATAAAAAGTTAAAATTTAGGGAGGAATTTGGAGAATTATGTAGAATATATATAAAGTTGTTGAATGGGGTAATAAATTGTCGTCTACCTTAGATAATGCAAAAAGTTCAGGACATCGACGACAATTTAGCGATTTACATTTTAAGTTTTTATCATGAGAGACGGGTATTATTTTCAGAATTATCAAGTATGATGGCTTGACATTGACCTGATTTTCTACAAAAATAAAATTGTCTTTATAAAAGAATGTGAACG # Right flank : GCATATAGTGAGGTGAGAAGAAAAATGAGTGAAATTATTTATTATGGTGCGTATGGGTCAAATTTGCTAAGAGAAAGATTTCTTATATACATAAAAGGTGGAGAATATAGAGGCAAAGAATATAGTGGATGCAGAGATAAAACAGAACCAATAGACATGGGCTGGATATATGTTCCTTACAGGCTTTATTTTGCAAGATGTTCTCCACGATGGGAAAATAAAGGTGTAGCTTTCTTATTTGACGAGAAAGAAGAAAATCCCGAGTACTATTCAGTCATTAGACTGTGGAAGATAACAGAAGAGCAGTTTTATGAAATCCAAAGACAAGAAGGCGGTTGGTATAACCTTATTTTAGAACTTGTTGAAAAAGATGGAATTGAAATTAAAACGATAACTGGACGCTGGAGAGATAAAAAACAAGCTCCATCAGAAGAATATTTAGAAGTCATTAAGAAAGGATTAAAAGAAACGACCAATTGGGATGATGAAAGAATAGAGGC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7029-13073 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXZ01000045.1 Thermoanaerobacterium thermosaccharolyticum strain A1 Contig_45_10139.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7029 30 100.0 37 .............................. CTTCGTATTGGTTTGATAACTATATGGCAGATGACGA 7096 30 100.0 39 .............................. ACATATATATGCCCCCTTAAAAGGGAAAAGGGTGCAACC 7165 30 100.0 35 .............................. GCACATAAGTATTTGCAATTATATTTGAATGTCAA 7230 30 100.0 37 .............................. CATTTAGCGATTGGGATGTATTGGATACTATATAGGA 7297 30 100.0 37 .............................. AAGCAATACAAGTACATTATGGAAGGCTATACTGCAA 7364 30 100.0 36 .............................. AATCTATCCAATCACCAATATCATTGGCGAAGTACA 7430 30 100.0 35 .............................. CGGTAATACATGCTTAAAGCAATTTCCGAAGTCCG 7495 30 100.0 37 .............................. AGATAATTCTGCGCTTCTGTGTAGTCTGTTGCTTCTG 7562 30 100.0 38 .............................. ATTGTTATTTCAGTCGCAACAGGCTCAGTATCTCTTGT 7630 30 100.0 37 .............................. TGTATTCTTAAAGTATATTTGACGACACTTGAATTAT 7697 30 100.0 37 .............................. ATATTCTCAATGCGTTTGGTCTGACCACACCGCCACC 7764 30 100.0 38 .............................. TGAGAGAAGGCAAGGCGGCACTCGCTCCTGAAGAGCAG 7832 30 100.0 36 .............................. TATTCCTACCTGTTCTTTGTATGTCTCTGCCTGTGC 7898 30 100.0 37 .............................. GTGCTATAACAATATTTGAGCTGCGTTATTATGCTAT 7965 30 100.0 37 .............................. TTCAAATTCTTCAAAGTTACAGTTCAGGCATAGCCGA 8032 30 100.0 37 .............................. TAAATGGAACATGGGGTGAGATATGGGTTGATGGTAA 8099 30 100.0 37 .............................. GTGGAGAACAGGTGAAGTAAAAGTAATAGTTATGGAG 8166 30 100.0 37 .............................. TAGACAGTAGAGATGACAGTGGCAAAGAAATCATAAA 8233 30 100.0 39 .............................. TTTCTAAGTCCAATGAAACTGACTCCAATTAAACAACAG 8302 30 100.0 39 .............................. TTAGATACTTTAGCCATATAATATTTGTCGGGTTCCTTG 8371 30 100.0 38 .............................. TAATATGCACTGGCATTTTTATCACCACGTTCTTCTTC 8439 30 100.0 36 .............................. TGATTTAAAAAAATATGATTGTGAGTCGTATGAAAA 8505 30 100.0 36 .............................. TCATTAAAATCCGCAATGCTAAGACCATTCTTTCCA 8571 30 100.0 38 .............................. CTACATTTAAAGGTGAATCTTCTCTTGAATCTTCATAA 8639 30 100.0 37 .............................. TCATAGTTGGATATTATATCATCTTCTACAAGTATTA 8706 30 100.0 37 .............................. AAGCCATTTTGAATAGCAGTTGCATAAGCTTGATATC 8773 30 100.0 39 .............................. AATTGTCATTTAAGAATTGCTCTATTTCATCTTTTACCA 8842 30 100.0 38 .............................. GCTAAATTCAGCAGCGTATCTCTTTTGACTTCTATATA 8910 30 100.0 36 .............................. ACAATATCATATATAGATTCCTATGTTGCACCAATG 8976 30 100.0 37 .............................. CAGTACATTGTACGGAGTTTCATTACCTCCGTACCAG 9043 30 100.0 39 .............................. ATCTCACCAGCCTTGTAAGTATTATATATGTTTGTCTGT 9112 30 100.0 36 .............................. ATATTCACTGTTTTAACTTCTCTGGTATCATTTAAA 9178 30 100.0 35 .............................. TATTTAAGCCTTTAGAAATGGAGAATTTAATAAAT 9243 30 100.0 37 .............................. GTGGTATATATCCGCCGACTGATGTGATAGCTGAAGA 9310 30 100.0 37 .............................. GATTTAAAAATGGTAGGACAGCCTTCTATTATCGTAA 9377 30 100.0 39 .............................. CATTACCAATACTTGAGGCCATATCGCCAAAAGTTGTTT 9446 30 100.0 37 .............................. TCTTTTCTTCTGTCTGCAAATATTGTCTTAGTCTTTC 9513 30 100.0 36 .............................. AGTCCATTGCTCTTTTTGCACTGCTTTTGACTGCTC 9579 30 100.0 37 .............................. ACCATGTGGACGCCAGGCTGGAATCCATGCACTTTGC 9646 30 100.0 37 .............................. TCTCTAAATTGTTTTATAGCAGGACTTAGATTACTAT 9713 30 100.0 39 .............................. CGCTTGAATTAAAGGAATATCGGTTCTTGAATATTCAGC 9782 30 100.0 37 .............................. ATCCTCCATGAACTTCATTAAACCATTTTGCGAAATA 9849 30 100.0 35 .............................. TCCCATTCATGCCCTTCTTCTGCATAATACAGCAA 9914 30 100.0 37 .............................. GAAAACTGAACGTACGTGGTGGCGTATCGGTACCCAT 9981 30 100.0 38 .............................. GTTGGTGATGTAGCTATATTGATTTCTAACTTTCTAGC 10049 30 100.0 36 .............................. AATGAAAATGTGGTGATGAGTTCCAAAATTCAATAT 10115 30 100.0 36 .............................. AGCATATCCATTTAACAATTCAAAAACCACTGTGGC 10181 30 100.0 37 .............................. CACTCCAAGCCATAATAGCTAAAGGATATCTTCTGAC 10248 30 100.0 37 .............................. TCTGTATCAAAATTTACAATTCCTTCATGGTCCGCTG 10315 30 100.0 37 .............................. GATATACCGGACATGCTTAATGTGATTTTCTTTTCTT 10382 30 100.0 36 .............................. TGGCTTTGTGTTCTTCTTTCGTTAAATCCGTCCATT 10448 30 100.0 36 .............................. AAGGCAAAATATCATATTTGAATATTTGCAAACCAA 10514 30 100.0 37 .............................. TATAATAATATCTCTTTAATTCTTCAATATAGCAATA 10581 30 100.0 36 .............................. TATACAATATATTCCAATCACCTCCGCTAAAACCAA 10647 30 100.0 37 .............................. ATTCTCTCAAGGAACGTCTGCCCATTTCCTGTTGCAC 10714 30 100.0 36 .............................. CTTCTCCCCATGCTTCGGCAGGATCCAGCTGTTCTT 10780 30 100.0 36 .............................. CTATCGCCGATCAATTCCGGTGGCACTCCGAAAGCG 10846 30 100.0 37 .............................. AATCTGATGAAAGAAAGAGACGACAAGAAAAGATATT 10913 30 100.0 37 .............................. AAGGCGTAACCTGAACGTTAGATGCTCTCTGCAAATC 10980 30 100.0 36 .............................. CTTTTAGATATGATATTTTTGCTAAATCTTCGCTCT 11046 30 100.0 36 .............................. AAGAACTTCGCCAAGCAACAGGGCTTGAAGGCTTCC 11112 30 100.0 37 .............................. CCTATCTGCTGCAGCATGTTTACTTTTCTATTTATAC 11179 30 100.0 38 .............................. GACCCGTATAACGCGTTGCAGATGATGGAAAGCCTATC 11247 30 100.0 36 .............................. TACGCTAGTTGAGCAATATATAAGAGAAATTGAGAA 11313 30 100.0 38 .............................. TGCCATACTTTTGCAATAGCTTGACTACTTCATTTTCT 11381 30 100.0 39 .............................. TTGAGAAAAGGAATAGATGAAGCAAAAATACTCGCTGCA 11450 30 100.0 37 .............................. GATTGCAAAAGATATACTATACTAAAAAAAATTAATG 11517 30 100.0 37 .............................. CAAACGCGGACTTGATTGAACTGTGCAAAAAAAAGAT 11584 30 100.0 36 .............................. TTTCCTCCCATTCAAACTGCCCGTATCCGCCATTTC 11650 30 100.0 38 .............................. GCATCTGTCGTTGTACCTAATGTTGCTATGGCTCCATC 11718 30 100.0 36 .............................. CATTTCTGTCGTATTCTTTTTCCTTGTGATCTGCCA 11784 30 100.0 37 .............................. AGCTCATGATAAAGAATTTCTTCCACATCTGTATCAA 11851 30 100.0 36 .............................. TTGAAGATAAGTCAAGAATACTGCATTCATAACTGA 11917 30 100.0 37 .............................. CAGCAAGCCTATAAAGTTCGTTCGTCTCATCTCTGAG 11984 30 100.0 36 .............................. CACAGACATGGGAGCTTGCGTTAGACTCGGCTAGCG 12050 30 100.0 37 .............................. CTAATAGCTGTTTTGAGATTTCCACTGGTACTTAAAG 12117 30 100.0 35 .............................. AGAGAATATGCAAATGGCTCACATGTAAATTGAAT 12182 30 100.0 37 .............................. CCGGGTCCCGTCAAGCAGGGGATTGCCGTCTTTGCAG 12249 30 100.0 36 .............................. ACAGTTTTGATGGCGATACAGGACGTTTCAACCTAC 12315 30 100.0 38 .............................. ACTGCAATGACATTGACAGAGAACTGGCAGAAATTGAC 12383 30 100.0 37 .............................. TTGCGATGCTAGGTCCCCTCTTTGCTGGACTAGCCGC 12450 30 100.0 36 .............................. AGACCATCGCTGCACTTGCTTGACCCACTATCATCA 12516 30 100.0 38 .............................. AGGATTGGTATGGGACGTGTACATGCAGATTACAAATG 12584 30 100.0 37 .............................. TATTTTAAGTGGATATAATTTAGAGAATACTGCTAAA 12651 30 100.0 35 .............................. ACAGATTTAGAAGCAAAAAAAGAACAGAAAGATAA 12716 30 100.0 36 .............................. AAATGATGAACGGGAGGGATGATTTCCCCCGACAAT 12782 30 100.0 35 .............................. AGCGTAAAATACACATCGCCTGTACCGTCCTGCTC 12847 30 100.0 35 .............................. CCTGTTGTTGGCGCTTCATTCGTTACGCTTATCAC 12912 30 100.0 37 .............................. TATTCTTGCGCTGGAAAAAAAGAGCTAATCGTAATTG 12979 30 100.0 35 .............................. TCTCTTCTTTACGTTCTATCAAATACATAATCATC 13044 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 91 30 100.0 37 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATAGTGATGATGGTACACCAAGCATAAGCAAATTTAAGCTTATAGATGACGGATATTATAAAGTTGATGCATATATAGAATATAATGATGAGGCAATTGAACTATGGCAAAGATATTTAGAACTTAAAAATGTAAAAAATCTTTTTAAAAGAAGAAACATATTTAATGAGTTTAAAGCTGATTTTTATAAATACGTAATTTCAATTCCAGAAAAAACTGAAAACATGCCGGCGGATGTAGAAGGTTTTAAATATGTAAACAGTGATTCAATAAATGAATATTATGATAAGGAGACGGGATTTATAACAAAAGGTGTTTTAAGCATCTGGTAATAAAATGTCGTCGATGTCCAATAGTGCAAAAAGTGCTGGAGATCGACGACATTTTTATTTTTTAGACACGTTGAATTATCTGTGTTTTATGATATAATAAGGTTGTAAACTTTACATAAATAGTATTTTATATTTTAAGACTTTGTTGGATTTTAGGCATTTTAACGA # Right flank : TTGCATAACTTGCTTTTTGTTGCTCTTTTTGTAAATGGTTTTTAGCCTACCTATCAGGAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //