Array 1 302626-302054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 302625 30 100.0 31 .............................. CCGGACGTGCGTCTCGTACTTGGCGTACGTC 302564 30 96.7 31 .............................A TGACCATCGACCCCGACACCATCCCCGCCAC 302503 28 93.3 31 ...........--................. TCCGGACCTCGTCGAGGTCCCAAGGGTTCCG 302444 28 90.0 31 ...........--................T TCGACGGCAAGGCCGCCCGGGACGGGATGCT 302385 30 96.7 31 .............A................ ACGTCCGGAAGGAGCTCGTGGACGTCGCCGT 302324 30 96.7 31 .....G........................ GGCGGTGTCTCACCGGGCGCCGATGCCGCGG 302263 30 76.7 31 ......G....CCC.......C...C...T GGATGCCGCTCCTGGTCGGGACGCCCGCCCA 302202 30 86.7 31 T..........CCC................ ACATTGCGGCACTCCGGGGCGCACGGCTCGT 302141 29 86.7 31 ...T........C-...............C GCGCACCTCTGCCGTTCGGTCACGGGGCTTG 302081 28 83.3 0 ...........CC-.......C...-.... | ========== ====== ====== ====== ============================== =============================== ================== 10 30 90.7 31 GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Left flank : CCTTGCCGATGTCGTGTACGGCGGCCAGCCAGACGGTCAGCAGCCGGGCGTCGTCCGCGCCGCCGGGCAGGGCGTCACCGACCAGTTTCCGGACGTTGGCGGGCAGCCAGTGGTCCCAGAGCAGCCCGGCGACGGCGGCGCTGTCGGCCATGTGCCGCCAGAGCGGCAGCCAGCCTTCGGTGTCCCGATCGTGCTTCGCCCATACGGACCGCACCGGTCCGGTAAGGCGCTCCCCAAGACCCATGCGTGTCTTTCCCGTTGAGTGCTGTGCGAGTGCTCAGGGAGATACCTACCGTCAAAGCGGTGGCCATGGCAGCAGATCGGAAAAGATGAGCGCGTTTGTGGCTGATCCGCTGGAATCGGGGAATGGAGACGCGCGCCACGTCTAGGATGCGAGCCCGCGCTGCCGGGTGGGTGGGGGTGTCTGGGTGGAGATGTCGGGTGCGGTGAAGTTGATGGGAAGTGGGTGGGGCGGGGGGTAAGGGCGCAGGTCAGGGAGT # Right flank : CTCGGGACGATCGGCGCCGGCACCCGGCGTCACCGCTCCCCGCCCCCCGCGGGGCTCCCGCCCCGGAGGCGGTCGATCAGGGGTGAACTCCCCCTCCCCGTACGGCCGTACGGGCTCCGCCCGGCTCCTCCTGCGCCACGGACCCCGATTCGTGCGCCGACGGCTTCGGGGGCCTAAGCTCTGCCGTGTGCTCGACGTGAGGCGTATGTGGGTGCTCTGCGCTGTGGTCGCAGGAGGATCGGTCACCGCGGCGGCCGCCCGGCTGGGGTACACGCCGTCCGCCGTCAGCCAGCAGGTGGCGGCGCTGGAGCGGCAGACCGGGACGGCCCTGCTGGAGCGGGTCGGACGTGGGGTGCGGCCCACCGCCGCCGGGCGGTTGCTCGCCGAGCACGCCGTGCTCATCGGGCGGCAGATCGCCGAGGCGGAGACCGCGCTCGCAGATCTGTGCGCCGGACGGACCGGACGGCTCGTCGTGCGGTACGCGCCCGGTTCCGGCGCCG # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 360565-359684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 360564 29 100.0 32 ............................. CATTCGAGAAACGGCGGCGCCCCCTTCCCCTT 360503 29 100.0 32 ............................. GGAGTCGAGAGCGCGCCCATGCCCATCGGTGT 360442 29 100.0 32 ............................. AGTCCCGCCCGGCGTCGGCCGGGCGGGACCTG 360381 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 360320 29 100.0 32 ............................. CAGTTGATGGAGCAGTACGACGGGGTGGCGAA 360259 29 100.0 32 ............................. CCGCCGTAGTCCTTCGCGTTCAGCGACCGGGG 360198 29 100.0 32 ............................. GGGGCGACCCGCGACCAAGGCACCCTGGCCAA 360137 29 100.0 32 ............................. CGCTCCATCGACGCCAGCGGCGACGAAGTCGG 360076 29 100.0 32 ............................. CCTCGTTGAGCCCTCAGCCGTCGAGCCGGAGA 360015 29 100.0 32 ............................. GGCGGCGCCGGAGCGGAGGCGGCGCCAGGCGG 359954 29 100.0 32 ............................. ACTGCCGAGGAGGCACCGGATGAGCGCCACGC 359893 29 100.0 32 ............................. CGGCCAAGTTCAGGCCCGCAACGAACCTCCCT 359832 29 100.0 32 ............................. CACGGCTCGCCGTCGACGGACGCGACCCGGAC 359771 29 96.6 32 ...........C................. TGGCCCACCCCGGCCTCTTCAGCGGCCACGGC 359710 27 86.2 0 ...........--.........C.T.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCCCGCGAACGTCCTGACTGCGGACGGAACCTTCTGCGGCGTGATCGACTTCGGTGACCTCTGTGCGGGCGACCCGGCCGGGGATCTTGCCGCAGCGTGGATCCTGCTCCCGGATGATGCCTTCGACCGCTTCCATGCTGCCTACCGGCCCACCCTGGACGCGGCGACCCTGCGACGTGCCCGTGGTTGCGCGGTGATGCGTGCCCTCTCCGGCATCCTCATCGGAGACGCCGGCGTCCACGGCCGTCCCGGCGGCAAGGCCACGTGGGGCCCGCCTGCCCGCACCTCTCTGGAGCGCCTCCTCGCGACGGCCCACCGCTGAGAAGTGTGGGTGCGCAGGTACCGCAGCGGAGATAGGAGAATGCGGGGCTTTGTATGATCGGCGCGGTCCGCTGAAGGGGAAGGGAAGTTGCTGATGCGCTCTATGTCGCCTATGCCGGAGTCGGTGAAGTTGCATCAGGAGCGCGTTGAGCGCTGACAAAGGACCAGTTCAGCGAGT # Right flank : ACCCCATGCCATGGAACCCCGGGCGATTCCAAAGACGTCGACGCCGTGGCCCCTCAGACGGCCACGAGCCCGCAGACCGCATAATCGAACTCCCATTCCTCACCCCCTCCACAGTTCACCTCGGGTGCGCGCCCACCGCCATCCGTTCCGTTATTCTGGGCCCGCCGCGGTGGCCATCATCCGCACCCGCTCAAGTAAATCGCTCAAGTAAACGAAAATATGATTTTGGGCCGTCAATTCCTGAGGGGCGACTTGCTACCCGACCACCACCTGCCCCGCCCCGACGGTCACGGCGTCCGCCTGCCCCTGTCGTCAAGCCAGCGCGAGATCTGGTTCGCCCAGCTCAGGAACGGGAACAGCGCCGCCTACCGGATCGGCGAGTATCTCGAAATCCACGGGCCCGTACAGGCGCGGTTACTGGACGCCGCGCTCCGCAGAGCCGTAGCGGAATCCGAACCGCTCAATGTTCGATTCGGGACCGAAGCCGGGGTGCCGTGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 363678-361939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 363677 29 100.0 32 ............................. TCCGGTGATCCGCATGACTGGCGGTCTGGCCG 363616 29 100.0 32 ............................. CGGCCTGCGTCACACAAAACCGCAGGTCAAAG 363555 29 100.0 33 ............................. CAGCGGGAGAAGGGAGGGGACTCGATGTGCTTG 363493 29 100.0 32 ............................. CTGGCCGAGCAGCCCGCCCCGGCGCCGGTCTG 363432 29 100.0 32 ............................. CCGGCCCTGACCGCTGAGCAGGCCCCCGGGAT 363371 29 100.0 32 ............................. CCCGCCGACCTCCCCGCCTCCTGGTCCGGCGA 363310 29 100.0 32 ............................. GAGTGGCTCCAGCTCCACACCGCCGAAGTCCT 363249 29 100.0 32 ............................. CCGAGGTCCGCCAGGCGGCTCTTGCTGCCGCC 363188 29 100.0 32 ............................. GCCCAGCGCGGGGCCGTCTTCGGGACGACCGG 363127 29 96.6 32 ............................T CCGAGTAGTGGTCGGGGTCGATCGTCACAATC 363066 29 100.0 32 ............................. CGGCCGGAGCCCAGCCGGTCGTCGGACGGTCG 363005 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 362944 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 362883 29 100.0 32 ............................. GCTGGATGGCGCCGCATCGGCGGTGCCCTGCG 362822 29 100.0 32 ............................. GGCCGCCCCCTCGACTCCCGCGGTCTGTCCAA 362761 29 100.0 33 ............................. GACGATGTTCGAAGCCGGGGACGAAGTAGAGAT 362699 29 100.0 32 ............................. GGTGTTGACGTTGGTCGACTGGCGAAGGCTCC 362638 29 100.0 32 ............................. TGCCCACACTTGAGGTAAGCAAGCTCGTGGGG 362577 29 100.0 32 ............................. TACGTACGCGACGGCGGCCGGGGCGGCTGGCG 362516 29 100.0 32 ............................. CGTGCGGGGGATGTCCGACCCCGGGCGTACGG 362455 29 100.0 32 ............................. CATCCCCGCTTCCGCCACCGAGACGACGCAGG 362394 29 100.0 32 ............................. GTAGCCGTCCATGTAGCCGGGCATGCCCGTGC 362333 29 100.0 32 ............................. GGCGGTCAGGTGCGGTCGGGGAATCCGATGCT 362272 29 100.0 32 ............................. CGGCCCCCGGCCTTCCGGCCTCGGAGCCGTCC 362211 29 100.0 32 ............................. GTGAACGCCGCCGTCTGGCCGTCGTTCTCCAG 362150 29 100.0 32 ............................. GCGGTGTTCACGTCGATCCCGACCACGAACCG 362089 29 100.0 32 ............................. CCGAGCTTCAGCCTCTTCATACGGCCCGAGCT 362028 29 100.0 32 ............................. AAGTCCTCGCCGCCCGCGAAGAAGCCGTCCGC 361967 29 86.2 0 .....................GA..G..T | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGGGAGTCCCCGGAGGAGGCGGCGGTCCGGGAGACCCGGGAGGAAGCCGGCCTGACGGTCACCGGCCGGGCACGGATCGGATCCCGTACCCACCCCCTGACCGGCCGCCACATTCTCTACATCGCCTGCACCACCGCATCCGGCACCGCCCATGTCACCGCGCCACGGGAGATCACCCACACCCGGTGGATCCCACCCCAACTGCTCGATACCTATGCCCCCGGTACGTACGAACCAGTCCGCCACCACCTCGGACTCCACACCTGACGAACGGACACCCCACACCCCGCTATGGGCCTCTGTCTGGCCGTGCATCTCGGGTGGTTCAGTGAGGAAGGGTGTGCGAGGGAGGAGTGGTGCGCGGCGGGCCTTTGTATGATCGGCGCGTTCCGCTGAAGGGGGAGCAGGACTTGGAGCCGTGCCCTATGTCGCTTATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCTTTGAGCGCTGACAAAGTGCCAGGTCAGGAAGT # Right flank : GCTGTTCATCCTCGGCGCCAACGCGCTGTGGTCACGCGCAGGCAAAGACACCGCGCCCGACGCCTGGCGGCGTGGGGTCGCCTTCATACTCGATGGCCTGCGGGCTGGCTCGGCCCACCCGCTTCCCGTTGCTCCGCTGACGCCGCAACAGCTCTACGAGATCATGGGCGGCATCATCGGCACACGGCCAGGCACCGGCCAGTAGGGGCGTGCCCGTCAGGCCGCGAACTCTCGGTCTCGTTGGTTGGCGGCCCGATGCCCCTACTAGGCTCGGCCTGCATGACTCACACCGAGATGACGATCACCGCCGAGCTGATTCGGGACCTCCTGCGCGACCAGCACCCCGACCTGGCCGAACGGCCTATCGAGCTCGGCGCGCGCGGCTGGGACAACCAACTCTGGCGGCTCGGCGACGACCTCGCCGTACGGCTGCCCTGGGCGACCGAGTCCGCGGACGGACTTTTGCGCAAGGAACACACCTGGTTGCCCGCACTCGCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 368970-368150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 368969 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 368908 29 100.0 32 ............................. TTCGGCCGTAAAGGGCATTTGTTCCTGACGTC 368847 29 100.0 32 ............................. ACGGTGGTGGCCTCCCGGCCGGGCGGCGCGAC 368786 29 100.0 32 ............................. AGCGGGACCAGCCTCCGAGATGCCGTGGACCG 368725 29 100.0 32 ............................. CGGCCCCGGGCGAACCCCGGCGTCGCGGTGGG 368664 29 96.6 32 .................C........... CCGGTCGCGCCGGGGAGACTCGTCGGGGTGCT 368603 29 100.0 32 ............................. CGGCCGCGCCGGAGGGCGCGGCATTTGGCGCT 368542 29 100.0 32 ............................. CTGGGCGGCGACCGGCTGACCGCCGGGACGCA 368481 29 100.0 32 ............................. AAGTTGACCGAGTGCGTCATGATGGAGGCATG 368420 29 96.6 32 ............G................ CAGATGCCCCGCCCGGCCCCGGAGGCCGAGGT 368359 29 82.8 28 .........A...A.......TC.C.... ACTCCCGTCCCAGCCGGGAGACGAACTT 368302 29 82.8 32 .C.......A.G.A..........T.... GAGGGTCGCCTCCCCACGCCCACCATGGCGGT 368241 29 75.9 32 ...T............T.......CCAGG CCGGACGAGCCCAGCGCCACCACGGCCACCAA 368180 29 82.8 0 ...T.T.......A.......T.A..... | AC [368155] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.1 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGTACAGCGAAGACGCCTACGGCTACACGTGGCTGCTGCTGCGCCGCGCCCCGGATGACGTGGCGTCCCTGGTGAACGACCTCCATGCGGTGAACACCCTGCTGGAGGAGTCGGGCTTCGGCCCCCACCTGCTGTGCTCCCTGATCACGTTCCACACCCCGGAAGCCCGCGCGCTGGCGCTGGTGTACCTGTACAAGAGGGGCACGTTCTACCCGTTCGCCCCGATCCCGGGCGGCGGTGAACGAAGGGACAACGCGCTGGAGTTGGAGGTGAGGTCGCTGCTGTCGGAGGATTTGAGGATGGAGGGGGAGCTGAACAGATGGTTTCCGGTGTGGGGGGCGCCGGGGTTGGAGGGGTGAGGGGTGTGGGGGTTTGTATGATCGGCGCGTTCTGGAGGAGGGGGAGCAGGACTTGGAGGCGTGCCCTATGTCGCTGATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCCTTGAGCGCTGACAAAGTGCCAGGTCGGGAAG # Right flank : CGGCAGGAGTTCCGTCCTGCTCCTGCATCACTACCCGGGACCGAAGTCATCCCTGTACTCACGCGGGGATCTCCCGGGTACCGTTCGTAAGGGACGATTGAGAATCAGGAGACTGGTATGGCGCGTTGGAGTGATTACACCACCGGTCAGCGCATCAAGATCCTCCGAGGAAAGACCCTCCGGCAAACCGACCTTGCCGAGTTGACGGGGCTGTCGCTCCCCACGGTGCAGCAGGCAGAACAAGACAAGCGACTAACTCTGCAGACTCTCCTCCTGATCGCCAACGCCCTGGGTACGGATACCTCGGTACTGCTCGGCCAGCAGGGCCCTCGCAGGGGAATGGAGCAGGATGATCGTGCAACGGTCAAAGCCCTCGCACGTGCGGTGCACGACACTTCCGCTGGCCTTTTCCCCGACAACGTCACGGCACCACCGCTCCCCGGACTCGCAGAGACCGCGAAGCAGTGCTGGGATCTCTATTGGGACGGAAAGTACGTGGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 377108-376698 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 377107 28 100.0 33 ............................ CAACGCCACCGCGGCCATTACTGCGTACCTGGC 377046 28 100.0 49 ............................ CTGCGGACCTGCGGACCTGCGGACCTGCGGATCCAGCGGCTCGTCTCCT 376969 28 100.0 33 ............................ ACGGTGTGATGGACCATCACTCCGTGCACCGGG 376908 28 100.0 33 ............................ CCGCGGGCGACCCGCCGCCCGAGGCCGGGACGC 376847 28 96.4 33 ...........A................ TCGCACTCAGCCTGAGGCGGGGAGGCCGGAAGC 376786 28 92.9 33 ...........AC............... CGATTCAAGGGCGGGCAGGTCGATGTCGCCCCA 376725 28 92.9 0 ...........A........A....... | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 97.5 36 GTGCTCCCCGCGGGCGCGGGGATGGTCC # Left flank : CCAGCGCGCCCGATTCCACGACGAGATCGACGATCCGCCGCCCGGAGAACGTCTCGCGAACCCCCTCCGCCCCCGCCAGCGCGACGGCCTGCCCGCCCCCACCGGCAACGGCGGCGAGAACGAGGGAACCCCGCAGCAGGAGCCGCCGCCCGGGATCCGACGGAAGGAGAGTCATGAGGCCACCTCGTCTCGGCCGCCCGGGGAATCCCGGGCACCTTCGGTTCACTGCCGAGTGTGGTGCTGCGGGGGGAGCACGGGGATCCGTCACACCCCTGACCGCCCCCGGAGTTCACCCCCTGAGGGGCATCGGGGGAGATGAAGCCGCGGAGGTACGGAACGCTCCGCCCGGCAGGGGAGGCCCTCGTATGATCGCCGGGGTGGGGCGCGGCCGGGAGGAGGGGGACTTGGGCAAGCTGATGTACCTTCAGCCAGTTTTGCCGGAGTCGGTGAAGTTGTATGGGAGGGGCGCTGAGCGCTGCCAAAGGGGCAGGTCAGGGAGT # Right flank : CCAGTTCGACCTGGTGCGCGGCCTGACCGACTAGTACTCCCTGCTACCCGCAGGGATCCCCGCGCCGCCCCCACAACCCCCACCCCCAAGCGGTAGCGTCTCCGTGCCGCCCACGGCCACCTGGGCGGCGCGCGTGTGTTCAATCCGCCGTGATCCCCCCGTGCAGGAGACCCCGTGGACCGAGTCAGAACCCGACGCACGCCCCTCCTGATCGCCACCCTCGCCACCCTCTCCGCCCTCACCGCCGGGACCTTGTCCCCGGCCACCGCCGCCCCGGCCCCGCCCGCGCCCACCACCGAGGCCCTGCGGCCCGTCTCGCCCCCGCCCGCGAGCAACTCCGTCTCGACCGCGCCCGTCACCGCCGACGGCGACGGCATCGAGACCGCGCGCACCTCCCGGCCCGTCGCACCCGGCATGACCCTCACCTCCTACGACCGCCTCGAAGCCGACAAATGGCTCCGCGTCGACACCCTCTCCGTCGAACTCGACGGCCACGGCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1837877-1841964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1837877 28 100.0 33 ............................ GCCAACGCGATGGTCTCGTGGCTGAAGGGCCTG 1837938 28 100.0 33 ............................ TCTGGGCAGTTTTTGATGTGCGGATGGTGGGCG 1837999 28 100.0 33 ............................ ACGAGGCCGTCACCCTCAGCCTGGCCTACGACG 1838060 28 100.0 33 ............................ TCGAAGGCGGCGTTCATCGCCACGAGCGGCGCG 1838121 28 100.0 33 ............................ AGGGCGTGGATCCGGGCGTCGAGCCCTTCGGCG 1838182 28 100.0 33 ............................ GCGGCGCACTCGGGCTGTACGGGGCAGGTGCGG 1838243 28 100.0 33 ............................ TACGCGGCGAGCCCTTCGGCCTGCTCGCGAGCG 1838304 28 100.0 33 ............................ GTGACGTGGATGTACACCCACCGTGGCGAGGCG 1838365 28 100.0 33 ............................ TCGACGGCCAGACCGCCAGTCATGCGGATCACG 1838426 28 100.0 33 ............................ CAGCCTGTGCCAGGCGGTGAGGGTGATCTCGCG 1838487 28 100.0 33 ............................ CCAGGTGTCGAGCGCGAACCGTTCGACAGTGAG 1838548 28 100.0 33 ............................ ACACCGGCGCCGAAGTCCACAGTCACCACCACG 1838609 28 100.0 33 ............................ GTCGAGGCGGGCCAGGGCCGCCTCGGCGATGCG 1838670 28 100.0 33 ............................ ACGGGCGGGAGCCCTCGGCAACCACCGGCCGCG 1838731 28 100.0 33 ............................ ACCGCATCCGCGCCGCGTCGGCCCGCGCCCTTG 1838792 28 100.0 33 ............................ ACGGAGACACCGCATGACCAGCACCATGGAATG 1838853 28 100.0 33 ............................ TCGAGTGGACCATCGCCCGGGCCGCACAGATGG 1838914 28 100.0 33 ............................ GCACGTGGCACGGCGGTGAAGGACGGGTGGGAG 1838975 28 100.0 33 ............................ AGGCCGAGGTACTCGGCCCGGGCGGCGATGATG 1839036 28 100.0 33 ............................ TCCGCCGCGTTCTCCGGGGGCAGCGGGGCCCGG 1839097 28 100.0 33 ............................ CCGCCCGCCGAGCCCGTGTCGGCGGCGGACCCG 1839158 28 100.0 33 ............................ GCCTTGTGGATGTGCTCACGGATCCGGCCCTCG 1839219 28 100.0 33 ............................ GTGCACTACCTGGGCACCGAATACCGCAGCCGG 1839280 28 100.0 33 ............................ GCACTGCGCACTGCTGAGTCGGCCAAGCAGCCG 1839341 28 100.0 33 ............................ ACACAGGGCGAGCTGGCGCTCTACCCGCCGGAG 1839402 28 96.4 33 ........................C... GCGCCGCAGGAGGGGCAGGGTGCGGCGGCGGGG 1839463 28 100.0 33 ............................ TCGAACGCCGGCCTTCGTGCTGTCCCCCTGACG 1839524 28 100.0 33 ............................ AACCCGGCCTGCTCCGCCCAGACCAGGGGCCAG 1839585 28 100.0 33 ............................ CGGGTGCGGTCCCGGGGCATGGGTGCTCCGGGG 1839646 28 100.0 33 ............................ ACTTTCGGGCCGGTCGTCGTTAACTACGGCCCG 1839707 28 100.0 33 ............................ GAGCCTCCCATGGTCGAGATCTACGACAACAAG 1839768 28 100.0 33 ............................ CCCTTGAAACCGCAGACCCCGACCGGCCCCGCG 1839829 28 100.0 33 ............................ GGCTGATGGAGCTTTCCCACCCCCAGGCGCTGG 1839890 28 100.0 33 ............................ CACAGCTACCAGGACTAACACACGCACAGGGCG 1839951 28 100.0 33 ............................ TTGGCTCCAAGGGAGTGCCCAGGGGGGAACGAG 1840012 28 100.0 33 ............................ TCCCGCCGCCGACTGGACCAGTACGTGGAGCAG 1840073 28 100.0 32 ............................ ACCTGCCGGTCGGCCGAGCCGAGGGCCCTGGC 1840133 28 100.0 32 ............................ GTGCGCTCCGCTGTGCTGGTTGCGCGCTGCGA 1840193 28 100.0 32 ............................ GTTATGGATGTCAGCAGGAACCGCCACCGGAG 1840253 28 100.0 32 ............................ CTCGATGGTGATGTACGTGTGGTCGACCCATC 1840313 28 100.0 32 ............................ CCCTCTCAAAGCGGGACATCCGCCGGGCCGCG 1840373 28 100.0 32 ............................ GAGCCCGCACCAGTGACCGACCCTACCCCCGC 1840433 28 100.0 32 ............................ CAGCAGTCCGGAGAGCGCCGCGCTCGGGGTGG 1840493 28 100.0 32 ............................ CAGCCGCAGGCCTTGTTCCGCATGCTCCCGTT 1840553 28 100.0 32 ............................ CCCGCCTACGAGTTCGGGACGGCGGCGCACAC 1840613 28 100.0 32 ............................ GACAGGGGGGACAAGGTCGATGAGCTTGCTGC 1840673 28 96.4 32 .................A.......... CGCAGAACCATGACCGGGGGATGGTCCAGCGC 1840733 28 100.0 32 ............................ GCTGGAAGGTGACCGATCTGCGGGCGCGCCTG 1840793 28 100.0 32 ............................ GTGCGGCTCGATGAGGCCAACGTCCGCACCGA 1840853 28 100.0 32 ............................ TCGACGTTGACGACGACAAGGTGACCCGCGTG 1840913 28 96.4 32 .............A.............. TCCTCACCGCCGATGGTGATCTCCCCCGGGGT 1840973 28 100.0 32 ............................ GGGTCCGGTACGCCGATGGTCTGGCCGGGGAC 1841033 28 100.0 32 ............................ GCGGCGGTGAGGGCCCGTACGGTGCCCTCATG G [1841054] 1841094 28 100.0 32 ............................ ACCCTCGCCCGTATCCAGGCCGGGCTCGACAA 1841154 28 96.4 33 ...........................A GGCTGTCGACCGTGAGAACCTCGACGTGCTCTG 1841215 28 100.0 32 ............................ CCATTCAGGCACTGCCCGAAACGGGGTCGTCA 1841275 28 100.0 32 ............................ AGTTCCGCCGGTGGACACCGGAGGAGGTCGTC 1841335 28 100.0 33 ............................ GGCGACCGTGGCCATCTCCGACGACCCGGATGC 1841396 28 100.0 32 ............................ GTCATGTCGATGTCTTTCTTCGGCGTCCCGCT 1841456 28 100.0 32 ............................ TTCTTGGCGATGCGCTTCATGCCGTTGATGGA 1841516 28 100.0 33 ............................ TGGTCGGCGATCTCGTCGGAGATGGCGGCTTCC 1841577 28 100.0 32 ............................ AGAGACTCCGAGCCCATGAACATGCTCGTGCC 1841637 28 100.0 32 ............................ CACTGCTGGCCGAGAGGGAGGGTTCATGACCG 1841697 28 96.4 32 ....................T....... GTTCCGGCGATCAGACCCATGGCCGACGCTTC 1841757 28 100.0 32 ............................ GCGGGAACCAGTGAGCAAGAAACCCGGCGGGA 1841817 28 100.0 32 ............................ CTGGGCACGTCGCCGCGGGACAACGCCGCCGC 1841877 28 100.0 32 ............................ CAGGTGGCCGACTTCCAGGCCACGACCGCGAA 1841937 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.7 33 GTCCTCCCCACCGCGTGGGGGTGTTCCG # Left flank : AAACCCCGATACCTTCCCGATATCGTGCAGCCCGGCGCACAAGCCGACCAGGCTCCGCGCCCGCTCCGGCTCACCGGCCAGACCCAAGCCCCGCTCAATAGTCCTTCGCTGGCCGTCCGACAAGTAGACATCCCACAAATGCAGCGCCATGGCAGCGGCGTCAGCCAAGTGCCTGACAAGCGGGTATGGAGGCAGCCCCGGATCCAGCCCTCGCGACTTCGCCCAAATCGACTCATCCGCCACAGCCCTGGGCACACCCATTCCCGCACAACCCCTCACGCGATCGCCAGCCAATGAGTCAAGCAGACCGCACCGACAACGGGCCCCATCCACACCACAGACCGAAGCATTCCGCCCCTCACAGCACCCGCCATCACAACCACCAGCCCCCGCGATACCCCACGGGATCCGCAGCTACAGTGAGGAAACTGCATCCGGGAGGCACAATGCGATCAGCAAAGGCAAAGCAAAGCCACTCCTAACGTGCAGGTCAGAAAGGG # Right flank : GTTTTCCTGCTGCTCTCCTCACCGCGTACGGACACGGACCAGCCCACACCGCACCCCCATCCTCTGCATAGAGCCAAGAGAGTGACGACGGGCAGCGGGATTCCCCTGGGACTTATCTGGGACTTCCGGCTGCATCAACGGCCATGACCATGAAACAACCGAAAGAACATTTGTGCAGGTCAGCTGCGCGGTACCAGCAAACACGGCAGGTCACAGACCTGACTGGTCTCTTCCGCGACAACTGATCAGGACGATCCGGCTCGGTGCACTACTCCTTGTCGCACCACCACCGCAGGAAGGGACGCAACCGCCTACGGCACTGAGGGAATGACGGCTACAGGCGCCCTTCACGCAGAGTGAAGACCCGGCTCGAACGACGGCCGGCACCGAACCCCGGCGCTCGCCTGAGCCCTCTTGCGCTTGACGCTCATATGACGCTCGTGACCCAGAATCCGCCGCAACCGCGCTCACCAAATAGCCTCTGACCTGCACTTATCTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACCGCGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3332933-3333326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3332933 29 100.0 32 ............................. ATCGTTGGCGAGTACGTGTTCGACCTCGTGGG 3332994 29 100.0 32 ............................. CGGCACCCCCCTGCGGGAGGTTGCTCTATGTG 3333055 29 100.0 32 ............................. CGTCACCATGTCCGTAGGAGACCACGGCGCCG 3333116 29 100.0 32 ............................. GCTATGCGCCTGTACCCGCGGTTCTTGATGAG 3333177 29 96.6 32 ..............C.............. GGCACCACGGAGATGCAGGGGATCCTCACGAC 3333238 29 86.2 32 ............TAC.........A.... GAGATCGCCGGACGGTACGGGCCGGAGAGTCT 3333299 28 89.7 0 .............AC..........-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : AGCGCTGGGGCTGCCGTCTGGAGTCCTATCTCACCGACCCCCGGGTGGAACCGGATATGAACAAGTGGCAGATCCAACTCGCCTTCCGCCTCGCCGACTGACCCCGGCACCCGGCCCGATCTCTTGGCCTCCGGCACGGGTCGGGGTCGGGGGCGAGGTCCGGCGTCCGGCGTCCGGCGTCCGGCGTCCGGGAGAACGCGAAGGACCCCCGTCCAGTCACTGGACGGGGGTCCTTCTTCACGTGGCGGCGCCAGGATTCGAACCTGGGTAGGCTAAGCCGACGGATTTACAGACCTCTGGCGCCTGCACTCGCAAGGCTCCCTTGAGCAGGCACTTTCCCGGGCACCCGGTGCTCCGGTTCCTGCTCCGTCCACACGTCGTCCTGATCATGCTCTCGGTCGCGCTCTGGACCGCAGGCTTCACGAGAGGGAGAAATGTCCGTTCTTGGCAAAGTGGGTAAAATCCAGGGTCGCGCCAACTAACGTCCCTGGTCAGCTCCT # Right flank : CGCACGCTTGCTCCCAGCACCAAGTCACCCAGGGACGATCCGGCTCGTGAAACCATCACCACGCAGCCGCTCGTACGCCTGCATCACGATGTCAGGCACTTCCTGCCTGATCATGAACCCCTGATCGGGGTAGATCAGCAACCTCTGAAGGGCTCCCACGAGCATGTCGATAACCAGGCGCTCATCCCCGATGGAGGCAAGGTAGTCCTCGAAGACCATCGGCGCGGACGCGCTGACGACGTCCACCTCGGGCCAGAGCTGGCGCGCCGTGGCATACGCGCGCCGCTCTTCGTACGGCTTGCTGACCAGCAGCACGGATGACACGTCAACACCGTTGTCTTCCAGCAAAGCCTTTGAGAATCGGATGTTCTCTCCAGAGTTGCGCGCCCGTGGTTCGACCAGCACGGAGGAGTCGGGCACACCAAGCTCAAGAGCGCGGTCTCGGTAGTGGACAGCTTCGCCCCGCGGCATACGCGCCGCCGTGGTGGGGCTGGTTGCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 5410355-5409411 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5410354 29 100.0 32 ............................. ACCGAGCAGAGGTACCCGGCTCACAAGGTCGT 5410293 29 100.0 32 ............................. CGGCCTGTCATGTCCCGGAGGCGGCCGTCCGC 5410232 29 100.0 32 ............................. GGTGGTGGTCGAACTGGAGCGAATGCGTGGGA 5410171 29 100.0 32 ............................. TCGCCCTCGAATTCCTCCAGGACGTCGCTGCC 5410110 29 100.0 32 ............................. CCCGTCTACACCGTCGTCGTTCTCGCCCTGGC 5410049 29 100.0 32 ............................. AACTCTGACGACTCGACCACGAAGAAGACCGC 5409988 29 100.0 32 ............................. ATCACCTATTGGGCGTTGTCGATCCGGTACCT 5409927 29 100.0 32 ............................. CGGAAACGGGTGTGCTGGGTCGGGCCCTCCGC 5409866 29 100.0 32 ............................. TGGGCAATCCACTGCGGGTGCTCCGCCCATTC 5409805 29 100.0 32 ............................. GATCTGGACCGGCTCCCGCTGGGAGAGGGAGG 5409744 29 100.0 32 ............................. CACCAATGGGTGGTGGCGGGCGGGGTGTCGGG 5409683 29 100.0 32 ............................. CCGCGGTTGTCACCGCTCGGCCCCGCTCATCT 5409622 29 100.0 32 ............................. TGCATCGGCTGGGCGTCGACCTCGGCCCAGGT 5409561 29 100.0 32 ............................. GACCTTGAGGAGTACGGCGCCCTCGTCCGCAA 5409500 29 96.6 32 ...................A......... GGCGGACGCGGGTCATCAGGGTCAAGGCTCAT 5409439 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GCGCCAGGGCGCCCGAGTCAAGGAGCTTGCGATACACCTCGTCCCGCGCGGAACCGTCCAGGCCGGAGGCAGTCACTTCCGATGCTTGCCGTCCCCTTCGGGAGCGCTTCCATCGGGGCTGGGCGGCTCCTGTGGCGGGGTCCACGGCTGGCCCGGGAGGTTTTCACCAGCGCCGCCGCCTTCTCCGCCGCCCCCGTCGCCCGCGTTGCGTGTGATCGGCTCGGCCATCGCGACCTCCAAGGCTGGCCGTAGGTAGTCAGCCTGGACTCTAGGGAAGTAGAGAGCATGCGAACAGCCCGAATTGGGCCGTTTGACGGATTCCCTCGGATGGGTGAGGAGGAACCGATATCGTCGGTGGCCGGAGCCGAGGGAGGGGGTTTGGTTTGCTGCACGATCCAGACCAACCAGAGCGGTTTTCGTCGTTTTCGACAGATTTGCCGGAGTCGGCAAAGTTGCGTGAGAACTGGTTCCCCGGCCGATGAAGCAGCAGGTCAGGAAGT # Right flank : GTCAACGCGACCTCGGCCGCGTGCGGGTAGCCGAAACACCCATCGGCGCATCGGCAGAACCGGAAATGCTCGGCGCTTCTCTGGCCGCACTGCTGCCCACTCGATTCTTGACAAGATCCGGTTCCGCCCCGGCGTCCAGATACGCGCTCTCACATGTACGACCTCGCCTGCGAGCCAGCCGTCGTTAGGCTCCACCCATGACCGACTACGTACAGGTTTCAACTGCAACACCCCTACGGGAACAGGCCGTCGAGCTTGCTCAAGGCGCGATCAAAGGACGTCTAGCAGCCGGCACCCAGGTCATTGGGCCTGTCGGCTCCGTGTTCTGGCACCTGGGGGAGTTTGGCGAAGGTACCGAATGGCGGCTTCTGCTCACCACGACGACGGACAGGTACCCCCAGCTTGAGCAGTACCTGTTGGAACACCACCCTTGGGACAACCCGGAGCTGCTCGCCACACCGATCGTCCGAGGTGCGCAACGGTGTTTGGAGTGGATTGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 5413760-5413487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029159.1 Streptomyces tsukubensis NRRL18488 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5413759 29 100.0 32 ............................. GAGGTGGAGCTCTGGGCGCTGGCGCACGCTGG 5413698 29 100.0 32 ............................. CCGCCGAGCCGCGGGTAGCGGCGGCTGACCGA 5413637 29 100.0 32 ............................. CGGCGCACGTCAGACAGGGAGTAGTGGGGTCC 5413576 29 100.0 32 ............................. AGGACCGTGTGTCATGGTCGGTCGCCTTCGGA 5413515 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTCCCCGGTCGAGCGTCTGGGAGGTCTCCGCGGTCACGAGGCCCTCTCCTTCGGAGTGAGTGACGGCGAAGCCCCACGGTTGACGCGGCGCCGTCCCGCCGGCGACGCACCGAGGACCCGCCGGCAGGCCATGGCACACCGGATGGGCTCCGCGGCTTCGCTGCCACGGGGCGCAAGATTGGTGAGCGGGACAGTAGCGACCAGGTTCGCTCAGCGGAAGACCTCGTCCAGAATCCGGTCGGGGGTATACCAACGCGGCCCGTTTGATGGCTGTTTGCCGAGCCTTCACCACGACCCCCCGGAGACTCCCCTTCCGCATCGGCGGGCCCATTTCGGCGGTGGGGGGAGGGGCCGGTCAGTAGGGTCGGGGTGTGGTGGAGCGGAGGGGGGAGTCGAGGTGTGTCGACCGGTATGCGTTGCGATGGTTTGGCACGTTTCGCCGGAGTCGGTGAAGTTGCTTCAGAACGGCGCGGGCGGGTGAGAAAGCGGCAGGTCGGAGA # Right flank : GCCACGCCCACACCCATCGCCGTCCCGCCGCCAACGGAGGCGGCATCGGCCTCTCCCCCTGGGATGAGCCGTCCGGCGTGAGCTGTACTGATAGCCCTGGAGATACGAACCGCAACCGCAACCGCAAGCCGAGTCCGCCTCCCTGTTCAGCCGTTCCCATCTCAGGAGATCGGTTCCACGCCGTACAGTCGGACGCGTGCACTCAGCGGTGAACAGAGCCCACGCCGGGCTGGTTACGGTTACCGGAAGTTCGGGCCAAGTAGGAGCGGCCCTGGCTGAGGCACTGGACACGGCCGGCTGGGTGGTCCGCGGCGTGGACCGGATTCCCGGCCGCTGGACGAGCGTCGTCGGAGACCTGCGAAACCAGCCGGTGCGACTGGCCGCATTGCAGTCGGCCGATGCCCTGGTCCATAGTGCCGCGCTGCACGCCCCACATGTCGGCCGCCTGGCCGATGAAGAGTTCCGAGCCGTGAACGTAGATGCGACCGCGGGCCTGCTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //