Array 1 1255243-1253505 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047585.1 Limosilactobacillus fermentum strain AGR1487 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1255242 29 96.6 32 ............................C CACCGGCCGCGCCTTCCGAATCGTCGGTGAAA 1255181 29 100.0 32 ............................. CAGCCATACAGCTAAGGACTCTAACCGAGCTG 1255120 29 100.0 32 ............................. CTACGACAGCTTAGCACGGGCTTTCCAGCCTG 1255059 29 96.6 32 ............................C GAACGATAGTTAATTGTGATTGAACCGGTGGA 1254998 29 96.6 32 ............................C CAGTGGCCGGTTGTCTGGTCAATCGTTGGCGT 1254937 29 96.6 32 ............................C GCACGGTTGTTCGCCCGTTCGATTACCAAGTT 1254876 29 100.0 32 ............................. TGCCGCGTCCGGAATGAACGCCTTCCCACTAA 1254815 29 96.6 32 ............................C GCAAGGGACTGGCTATGTGAACCCGAAGTGTA 1254754 29 96.6 32 ............................C AAAGCGACCCCTAACCAGTGGGTTCGTTGCTA 1254693 29 100.0 31 ............................. GTAATGGACGTCGGGGGCCTGGGCCTAGGTG 1254633 29 100.0 32 ............................. GTAGGTTCCAGTTGGTGCCGTCCATTGATTGG 1254572 29 96.6 32 ............................C CAAGTAGAACACGTTGGGCATCCGGCAACCGG 1254511 29 100.0 32 ............................. AGCATCACTAAACCGACACACACTGTCTCGGC 1254450 29 100.0 32 ............................. TAAACAACCGTCAAAACTACAACAACCAATAC 1254389 29 96.6 32 ............................C GGCTAGCGACAAGAAGCAGAAATACAAAAGTG 1254328 29 100.0 32 ............................. AAAGCCGGCCATTATGACCGGCGATACTAATC 1254267 29 96.6 32 ............................C GTGCACAAGCAAAACTGATTAGGCAGCGTAAG 1254206 29 96.6 34 ............................C GTGGAGACAGTAGAATTATGGCCGGGTGACCGGG 1254143 29 93.1 32 ......T.....................C AAACGAAAACTTTACGGTCGAGGACTTTAAAA 1254082 29 100.0 32 ............................. TCAAGCCGACTAAAACAGAATCGTCTAATCGG 1254021 29 96.6 32 ............................C TGATCATCGCCGCGCTTGAATCCATCTAATGG 1253960 29 100.0 33 ............................. TGATGGGCATTACTACCGAGACCGAAGAGGTAA 1253898 29 100.0 32 ............................. GCTGATATAAGCGGATTGATAATCGCCAACCG 1253837 29 100.0 32 ............................. ATCGTTGATTTCCTTCATTTTTTGCCTCCATT 1253776 29 96.6 32 ............................C AACAGGTTAAGCGAGCCCAAACGCACGTGACG 1253715 29 100.0 32 ............................. CTCACCGTCGGGGCCAATGACGTTGATCCGCG 1253654 29 89.7 31 .............G.......A......C GACATGTGGAAGCGGCTGATCGCCATCCCCG 1253594 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1253534 29 79.3 0 ...T.......TC.A........A....C | T [1253529] ========== ====== ====== ====== ============================= ================================== ================== 29 29 96.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCTACTGACGAAATAATATCGATAGGGGCAGTCAAGTCAACCAATGGGGAAGAGATAGAACGATTTTATCGAATCATTCAACCAGACAAGGTAATTTCTCCAAAAATTACTGATCTCACAGGACTCAGCCAACAAAAAGTTGAGCAAGAAGGAATTAGCCTTGAAGCCGCACTGACGGACCTGAGGGATTTTATAGGACGATTCATTGTAGTTGGTTACAACGTTGCATTTGACTGGGGATTTATAGAACGAGGGTATGATAAAGTAGGACAAGATCGCTTGGGGAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTCGAAACGGTTCTAAAATACTACCAGATTGAAAATCAGGATCAACATAATTCACTAGCGGACGCCGATGCAACGATCAAGCTTATGACCAAACTGATTGAAAAAGGGTTTTTGAAAATTTGAAAACCGCTTGGTTACAGGGATCTTTTACT # Right flank : TACGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGCCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATAAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //