Array 1 3879098-3882965 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024617.1 Shewanella algae strain TUM17386 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3879098 28 100.0 32 ............................ TAAGTTTCACATGGCTATTGTTCAGTATGGTA 3879158 28 100.0 32 ............................ CAGGCTTGGGCTGATAGCCGCCTGACTTCTGT 3879218 28 100.0 32 ............................ AGCTTCCGAGGCTTTTAACCGCTGCCAACGCC 3879278 28 100.0 32 ............................ GGCATACTCAATCAAGTGTGATTGTGAGCAAA 3879338 28 100.0 32 ............................ ATCAAGGATGTAAGTCGCATTACCTGAGTTAC 3879398 28 100.0 32 ............................ TGAAGATCACCGCTTGCATCATCGCATTTGTT 3879458 28 100.0 32 ............................ TTTGGAAGTTGTGCAATGACCACGGAATGACC 3879518 28 100.0 32 ............................ CAAAGGGCCGCCATACAGATATCAGGATTGAG 3879578 28 100.0 32 ............................ ATTTTCCGCGACTCAATTGAAGCCGCGCATCC 3879638 28 100.0 32 ............................ TGTACCCGGATCCGATATTCATCTGCCCAAGA 3879698 28 100.0 32 ............................ ACCTGAGCCGAACCCGAAATTCACACTCCCGC 3879758 28 100.0 32 ............................ GATTGTTGATGAATTAAAGTCGCTGAATAAGA 3879818 28 100.0 32 ............................ TCGTTAATGTCGAGAAAGCGGGCTATAGCGTC 3879878 28 100.0 32 ............................ ACCACCCTATGAGGAAGAAAGTAGGCAAAGTC 3879938 28 100.0 32 ............................ TCGGGCTGCCGATATTCTCGACGGCTTCGATT 3879998 28 100.0 32 ............................ TTCGTCGTAGGGGTCGTTAAGCTCATACGCTT 3880058 28 100.0 32 ............................ GAACGCCGCGAGAAGGACGAAAAGTTCGTCTA 3880118 28 100.0 32 ............................ AATTAGGCGCCCCCACTCGATAAGCGGGGATA 3880178 28 100.0 32 ............................ TGCCCCGGGCATTCGCTGGTATACGGGTATAC 3880238 28 100.0 32 ............................ GTACGTGCTAGATACCCGGGTCGCCGGAAACC 3880298 28 100.0 32 ............................ ACCACCCTATGAGGAAGAAAGTAGGCAAAGTC 3880358 28 100.0 32 ............................ ATAAGGAAGAAACCGGCGACCACCACCCTATG 3880418 28 100.0 32 ............................ TGACTCGATAGTCGAGTAGTAAGCGGGTTCGA 3880478 28 100.0 32 ............................ TGCCATTGCTGGTCTAAAAGATTTGGACGATC 3880538 28 100.0 32 ............................ ACCTGTCCCCGGCCGCGGCCAATTAGCTTGAA 3880598 28 100.0 32 ............................ TGTAGGCCTGGCCTGGTTCTCACCTGACTGCA 3880658 28 100.0 32 ............................ ATCAACCATGCCAGCGCCCTGGCTGAACAGTT 3880718 28 100.0 32 ............................ ATCAAAAACAAACCAGGGCAAACAATAGTTAC 3880778 28 100.0 32 ............................ GCCTAAGTCCCCGATATTCGCGGTCAATGCTT 3880838 28 100.0 32 ............................ AAAGCGCGTAGGTAGCCTGAAGGGCGCGAGGC 3880898 28 100.0 32 ............................ AAGCGCGGCTACAATATCGAAGGCCTCCTCCC 3880958 28 100.0 32 ............................ TTTGGCGGACGTATGCCTGCTTCTGCGGCCTC 3881018 28 100.0 32 ............................ GGAACGTGCCCTGTAGGGGGCGACTTTTGCAT 3881078 28 100.0 32 ............................ ATCCTGCCTGAGCTTTTCGCGACTGATGTAGC 3881138 28 100.0 32 ............................ ATCCTGCCTGAGCTTTTCGCGACTGATGTAGC 3881198 28 100.0 32 ............................ TACCTGCTCGATGGCGAAGTGTCGGCGCTCAC 3881258 28 100.0 32 ............................ AAACCAAATCCACATAGGCCGCTTACGGCCAA 3881318 28 100.0 32 ............................ TCCTGACCATTGGTGACAATAATCTCAGCCTT 3881378 28 100.0 32 ............................ TGAGGCACCTGGAACTGATTAGGGAGATTAAA 3881438 28 100.0 32 ............................ TGATAACCTCTTGCGGGGTCAACGGGGCTGGC 3881498 28 100.0 32 ............................ AACTGCAGGAGTTTATGGGGTATTCAATGGTG 3881558 28 100.0 32 ............................ GCCGCTAAGGTGATGGGCTACTCGGTAAAAGA 3881618 28 100.0 32 ............................ GTTGAACTCATAAAATATCTTCTCGCAGCACA 3881678 28 100.0 32 ............................ AGCAGATGACATACCTATGCCAGCAGATAGCA 3881738 28 100.0 32 ............................ GCTGGGGAAGAATGCGAATACAAATTGTGGAG 3881798 28 100.0 32 ............................ TTATTACCCTCGCCTGGATGGCTTTTGCCATT 3881858 28 100.0 32 ............................ AGTCAGGCGTTGTCACATCAGCTCAGCTTGAC 3881918 28 100.0 32 ............................ GCCGCTAAGGTGATGGGCTACTCGGTAAAAGA 3881978 28 100.0 32 ............................ ATACCCAGCTGGATAGATTTAACTGACATGCC 3882038 28 100.0 32 ............................ AGAGAGCTTGCTCATGAACGTAGAACAAAGGG 3882098 28 100.0 32 ............................ TTGTTGCTCACTATGTTTTTCAGCGCCCGAGT 3882158 28 100.0 32 ............................ GAAACCGCTCTTCTACTTCATGGACAAACAGC 3882218 28 100.0 32 ............................ TACGAACCCGGAAATCCTGCACGCCTTGCATA 3882278 28 100.0 32 ............................ AACCACAGGCAAAGCAGTAGATAGTGCCAAAC 3882338 28 100.0 32 ............................ AGATATTACCGATTGGCTCAGTAATGGCTGCT 3882398 28 100.0 32 ............................ ATCCATTATGCCAGCACCAGAGAAAAGCGACC 3882458 28 96.4 32 ..................G......... GTTTAGCCCGGCGGCTATGTCTGACCAGATAT 3882518 28 100.0 32 ............................ GACATAACGATGCAGCACGCCTTGCGCCGTCC 3882578 28 100.0 32 ............................ TGAGATGTTTGATGTTGCTTCGTTTGATGACA 3882638 28 100.0 32 ............................ TTCCATACCCGTAAATTGTGACACGACATGAA 3882698 28 100.0 32 ............................ TATGGATGCTGTAGCGCATATAGCAGCAGATA 3882758 28 100.0 32 ............................ GATTACGACAGCCTGTTGTTTGATGATAACAA 3882818 28 100.0 32 ............................ GACAATGACGAACTCGAACCACCAAGGCGCGC 3882878 28 92.9 32 .............T..A........... AGCGAGGGATTTTAAATCCCTTTTTCAATACA 3882938 28 92.9 0 ............T........G...... | ========== ====== ====== ====== ============================ ================================ ================== 65 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTCAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATTGAAAGATATCCGCAAAGCACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTAAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGCTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : AGGTTTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCATCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //