Array 1 3508-5793 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJPQ01000134.1 Escherichia coli AI27 1.ECAI27.1_134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3508 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 3569 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 3630 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 3691 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 3752 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 3813 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 3874 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 3935 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 3996 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 4057 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 4118 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 4179 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 4240 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 4301 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 4362 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 4423 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 4484 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 4545 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 4606 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 4667 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 4728 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 4789 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 4850 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 4911 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 4972 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 5033 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 5094 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 5155 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 5216 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 5277 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 5338 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 5399 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 5460 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 5521 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 5582 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 5643 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 5704 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 5765 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43851-44734 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJPQ01000030.1 Escherichia coli AI27 1.ECAI27.1_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43851 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 43912 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 43973 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 44034 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 44095 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 44156 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 44217 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 44278 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 44340 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 44401 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 44462 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 44523 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 44584 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 44645 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44706 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //