Array 1 37472-34367 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZIC01000002.1 Moraxella catarrhalis strain COPD_M1 NODE_2_length_321883_cov_21.903, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37471 28 100.0 32 ............................ CACACCCACCACTGTTTGACTTCATGGCGGAC 37411 28 100.0 32 ............................ TGGTTGCTATTATAGGGTATCTTACATTAAAA 37351 28 100.0 32 ............................ TACTGTTTGCAGTTTAACGACTTTGCAGGGGC 37291 28 100.0 32 ............................ CAAAAAAAGAAGTTTCGGTGATTAAGGCCCAT 37231 28 100.0 21 ............................ GCTGGCGGACGGTGTTGATGT Deletion [37183] 37182 28 100.0 32 ............................ ATCTACAAGACCATATATTTCACCCTCTGATA 37122 28 100.0 32 ............................ GCCATCACGAATGGACGATGAATAGCAGTGAT 37062 28 100.0 32 ............................ ATCAGGAAAGTTCGGCTCGCCATTGTCGTTAA 37002 28 100.0 32 ............................ ATTAAACAGCGACTTTCAAAAACCCACAGTAG 36942 28 100.0 32 ............................ TTAGCGTACAGGGGGTATTATTTGGCATGAAT 36882 28 100.0 32 ............................ GGGGTCAAGATTGGGCGTTGGCATTAGCAGAC 36822 28 100.0 32 ............................ TGTTCATCAAGAAAGGTTTTGATGGGCAAGAT 36762 28 100.0 32 ............................ ATCTGATGCTTGCCTAATTGCCGATAAACTCG 36702 28 100.0 32 ............................ TTGCACCAACACCGCTCATGACAATGAGCAAT 36642 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 36582 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 36522 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 36462 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 36402 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 36342 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 36282 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 36222 28 85.7 0 .......................CTTC. - Deletion [36195] 36194 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 36139 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 36079 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 36018 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 35958 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 35897 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 35837 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 35777 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 35717 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 35656 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 35596 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 35536 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 35476 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 35416 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 35356 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 35294 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 35235 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 35175 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 35115 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 35055 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 34995 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 34935 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 34873 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 34814 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 34754 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 34694 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 34634 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 34574 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 34514 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 34454 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 34394 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 53 28 99.3 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTAGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACATTCAATCCAGAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //