Array 1 95777-94405 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDM01000017.1 Escherichia coli strain MOD1-EC6069 MOD1-EC6069_17_length_110700_cov_42.5462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95776 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 95715 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 95654 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 95592 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 95531 29 100.0 32 ............................. GCGTGGGCGAAATTGCGCAAAATACCGCTGGG 95470 29 100.0 32 ............................. GGCGATACGCCGCGCGATCGCATCCTCAATAT 95409 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 95348 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 95287 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 95226 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95165 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95104 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95043 29 96.6 32 ..................A.......... AGATCGGCGGCCAGTGGATAATCGTTATCCCC 94982 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 94921 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 94860 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94799 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94738 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94677 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94616 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94555 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94494 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94433 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173563-174201 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMDM01000008.1 Escherichia coli strain MOD1-EC6069 MOD1-EC6069_8_length_174393_cov_43.1909, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173563 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 173624 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 173685 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 173746 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 173807 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 173868 29 100.0 32 ............................. TTCATGCGCCGCCCCACTTCACTGATAGCGAA 173929 29 100.0 32 ............................. CTCAAAATCGGCGGCGGTTAAGTGGCTGACAT 173990 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 174051 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 174112 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 174173 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGAAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //