Array 1 163377-162023 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUW01000024.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-50 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163376 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163315 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163253 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163192 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163131 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163070 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163009 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162948 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162887 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162826 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162765 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162704 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162643 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162540 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162479 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162418 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162357 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162296 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162235 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162174 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162113 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162052 29 96.6 0 A............................ | A [162025] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAGGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181063-179509 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUW01000024.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-50 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181062 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181001 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180940 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180879 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 180818 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180757 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 180696 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180635 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180574 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180513 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180452 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180391 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180330 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180269 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180208 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180147 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 180086 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180024 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179963 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179902 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179841 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179780 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179719 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179658 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179597 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179536 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //