Array 1 510615-513145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJR010000002.1 Salmonella enterica strain SC-Z1910-0002 NODE_2_length_785749_cov_147.426738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 510615 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 510676 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 510737 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 510798 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 510859 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 510920 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 510981 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 511042 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 511103 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 511164 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 511225 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 511286 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 511347 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 511408 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 511469 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 511530 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 511591 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 511652 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 511713 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 511774 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 511835 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 511896 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 511957 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 512018 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 512079 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 512140 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 512201 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 512262 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 512323 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 512384 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 512445 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 512507 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 512568 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 512629 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 512690 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 512751 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 512812 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 512873 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 512934 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 512995 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 513056 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 513117 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GGATGAAAGAAGCGTTAAACGCCTGCTGGACCCGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGTTTTTCGGCTGTATCCAGCGTTATCCCTTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTTCGGCTGTATCCAGCGTTATCCCTTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAGTGACTTCCGGCGACACAGATCCTGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCAACCCCCGATACCCGCGAAGAAGTGGCACGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTAGAATTACGCATTGAGCCGATGATGTAGTGTTCCCCGCGCCAGCGGGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 513339-513610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJR010000002.1 Salmonella enterica strain SC-Z1910-0002 NODE_2_length_785749_cov_147.426738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 513339 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 513400 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 513461 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 513522 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 513583 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGAAATGATTAAGGTGCTAAAAGCGCTTAATAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGTTAATCGCGGCGCCACGATATCAACAGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGACTCGCGAATAATCGGAAACCAGCCACCATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCGCAGATTCTCGGCGGCTGGGAAAACACGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAAGGCAGCTCCAGTCTGGCACCTGCATGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGAAAGAAGCGTTAAACGCCTGCTGGACCCGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGTTTTTCGGCTGTATCCAGCGTTATCCCTTGTT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 530222-532142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJR010000002.1 Salmonella enterica strain SC-Z1910-0002 NODE_2_length_785749_cov_147.426738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 530222 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 530283 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 530344 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 530405 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 530466 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 530527 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 530588 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 530649 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 530710 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 530771 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 530832 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 530893 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 530954 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 531015 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 531076 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 531137 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 531198 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 531259 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 531320 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 531381 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 531442 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 531503 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 531564 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 531625 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 531686 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 531747 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 531808 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 531869 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 531930 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 531991 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 532052 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 532113 29 93.1 0 A...........T................ | A [532139] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //