Array 1 1049-5174 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGUZ01000101.1 Bacillus sp. V3-13 contig_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1049 36 100.0 29 .................................... TGTGCAAGGTATGATTTGTTTGGATCCGG 1114 36 100.0 29 .................................... TAATAGTTCTCACTTCATAGCCAACTAAG 1179 36 100.0 30 .................................... CAAATGGCGGGTATAGTACAAGAAGTAAGG 1245 36 100.0 30 .................................... GAAAAGAAAGATGAGACAATGCTAACACTT 1311 36 100.0 31 .................................... ATTTATCGTTTTGGCTGAGCGGTGGGACAAG 1378 36 100.0 31 .................................... TTGAACCAAAGCGTAGCTTCCTTTCTGGTGT 1445 36 100.0 30 .................................... CAGACGGTGCGGCTTTAGAATCCGACATAA 1511 36 100.0 30 .................................... CACCGGCAAGCAGGCCTTGAGCAATGTCTG 1577 36 100.0 30 .................................... ACCTGGTTGAGCCAGAGGACGAGATCACGT 1643 36 100.0 30 .................................... CAGTTCTGGATGAACAAGAACTCGAAGAGA 1709 36 100.0 30 .................................... TATATCGCTTGCTACTGAATACTCTACTTC 1775 36 100.0 30 .................................... TGATGCTCCAAAATATAATCCTTGCAGTAA 1841 36 100.0 30 .................................... ACAAATTTCTCGATGATATGATCACGAAGG 1907 36 100.0 30 .................................... CTATTGGAATCACAGATTTTCAGCTCACAG 1973 36 100.0 30 .................................... GAAGAAAAAGAAAGATAAGTAGACGACCTT 2039 36 100.0 30 .................................... AGATGATTCAAAGTGCCAGTAAGCGGCTGA 2105 36 100.0 30 .................................... TATATGTTATTCTTGTTCACGAGTGAAAAG 2171 36 100.0 30 .................................... TGAGGTCATCATAAGGGAGCTGGCCTAAAT 2237 36 100.0 30 .................................... CTAACCCGGTTGACTTTATGCCTGTAGTAA 2303 36 100.0 30 .................................... TTTGTTAGTTGCATCGTTAAATCGCGTTTT 2369 36 100.0 30 .................................... GCCTTTCCACCAAGTTTTCTCGCAAACTGG 2435 36 100.0 30 .................................... CACCAGCACTTGAAATGATTAATCATCTGG 2501 36 100.0 30 .................................... AAAACAGAAGAAAGACAAGTAGGTGCTCAC 2567 36 100.0 30 .................................... TTGCTTCTTTGGATGAGAGGGTTGTAATGT 2633 36 100.0 30 .................................... TGTGAGCTGTATACAAGCCCCCGACGTGCC 2699 36 100.0 30 .................................... TAAATACAACAGGATTGTATTTTGGTTCTC 2765 36 100.0 30 .................................... CAAATATATCCTAAACTTTTAATCAGTTGG 2831 36 100.0 30 .................................... ACTTTGATGCAAATGGCTATCTAAGACTAG 2897 36 100.0 30 .................................... AATCTATGAACGAAATAGTTGAGCTTTTAA 2963 36 100.0 30 .................................... AAACCGAGATCAAAACCTCCAGCTCCACAA 3029 36 100.0 30 .................................... TAAGAGCTATTGTTTGCCATGTTCCCCAAG 3095 36 100.0 30 .................................... TCAAAGAAGCAGGATGCTTTGATGTTATTA 3161 36 100.0 30 .................................... CCAAACTCGATCAACTCATTCACGCCGTGA 3227 36 100.0 30 .................................... TTGGATAAACGTACTTATACCGCCCTAATG 3293 36 100.0 30 .................................... TGTTTAATGTAACCATCTGCACATGTCTAG 3359 36 100.0 30 .................................... AGCAGCTGAAAGACTGTTCGTGTAATAGAT 3425 36 100.0 30 .................................... AAGAACAAAAAGCTAAACTGATTCGATTAG 3491 36 100.0 29 .................................... CTCGATGATCGCTTTGCCAAATCAGTTGG 3556 36 100.0 30 .................................... CCTAACCAGGCTTTCTCTTTTACCCACATG 3622 36 100.0 30 .................................... TTAGTCAGGTAACAGAGGAGCAACCGAAAG 3688 36 100.0 30 .................................... TCCACTTCATATCTTTACGGTTACGTCCAA 3754 36 100.0 30 .................................... GGATTCAGTAGTGAACAATCCGAACATTTT 3820 36 100.0 30 .................................... AAACTGTAAAGACGGCGGTCGCTATGGCTT 3886 36 100.0 29 .................................... AAAATTCGAGTTCAGTAAACTTGAAGAAA 3951 36 100.0 30 .................................... CTTCGATGATGATGGCCGGTTAGTTGGTTA 4017 36 100.0 29 .................................... TGTTGCGGATTTCAACCATGAATTCCTGA 4082 36 100.0 31 .................................... AGAGGGTTTTAATGATCTGATGCAATTTTTA 4149 36 100.0 30 .................................... TCGTATTGTCGACTACATGTCCTGTAAAAT 4215 36 100.0 30 .................................... TGGAGCAATCATCTTCTTTGTCTTCAAATG 4281 36 100.0 30 .................................... ATCGGCGATGAATTGGTGAAATACGGGCAA 4347 36 100.0 30 .................................... TCTTCAGCTGAAATGTAGTGAATGTCCTTG 4413 36 97.2 30 ......................T............. AAGAGAACCGCGCAACAGCCCGAGAGTGTG 4479 36 100.0 30 .................................... ATCAGCTTATTGGATACTTTAACGCGCTTT 4545 36 100.0 30 .................................... ATAAGAAACGGGAGGGACTTAGAATGAAGT 4611 36 100.0 30 .................................... AAAAAATGTGGAGCGTCAAAGCAATGGATA 4677 36 100.0 30 .................................... GATGGCGGCAGTTACATTCGTTACGGTAGC 4743 36 100.0 30 .................................... AAAATGGAACGTACTAAAGTAGGTGACTGA 4809 36 100.0 30 .................................... GAAGTCTCCTTTGATGATTCATAGCTTACT 4875 36 100.0 30 .................................... GTTCAAGCTTCCGAATCTTTTCGATCTGCT 4941 36 100.0 30 .................................... TTGCCCATATTGTTTCCGATGCGGTTAACT 5007 36 100.0 30 .................................... TCACAGATAAGCAGAAGGCTATTCAGGAAA 5073 36 100.0 30 .................................... ATCATGCAAAATCAAAAGACATTTTGGGGT 5139 36 91.7 0 ........................T....A.....T | ========== ====== ====== ====== ==================================== =============================== ================== 63 36 99.8 30 GTTTTGGTACCTTCTCAATTTTCGGTATAGAGAAAC # Left flank : TTATTGTCTAACAAAGAGTTGGAAAAGCGCAGGCTAATTCTTATTGAATTTCCAGAGCTTTATGCGGATAACTCCCAGGTTATTGAGTTTATGGAGAACATAAATTTATTGGCATCCATGGGTACTAAAATTATTATTGTAACCAATCAAAAAACAACTAAACATTGCAATTATGTGTGTAACGGTGAAATCATAAATGAAGCACGGTTAGAAAATATAAAACGTAAAGTAATAAATGAGGTCCCATTTATCTGTGATGAACTAACTTTCATTCAAGCAAAGAACTCATTATTAAGAGCTGTGGATAACTTTGAATTTAATAATAAATTTCTTACTTTATCCTCAATGCAGAATGAAAAGATATTAGTACTTGTATTTGTAATGTTATTTCATTTAGATATATCGGTAAACCTTGATATGACAGGTATTTCAGGGAATTTAAAGGAGTTTTTGAAGTGTTATTATTAGGCTTTTACTCGATATGGTATAATCAAAATGAG # Right flank : TATGGGAAAATTCTGAGAGAATCATCATATGGAAAGGAGTGTAATCAAATGAGTGCATCGATCTATTATATGATGTTGCTAAAGGATCAAGATCATGCAGCCATTGTCGCGAAAATTATCGATGATTCTTGCAACATCGACAACGGGACTGAGGAGGACTTTCTGGCCAACTTCAATAAGTTGGAAGTCATTCGGACGCTCGGTGAGGATGAGATCTACAATAAGTTTATCAGTGAACTGAAAGAGGATGATAGATACAAAGACTATATCATTTGTGAGTAGCTAAAGATTTTAACAAATTCGATTCATTTATTATCTAACCATCCCTTTCAACTAGCCCACCTTTTGTTTTACATTCGCAAAAACGTTGGGTTTGACCTTGTCTCTGTGGCAGCGGTAAGAAATACAAAAAGAGTTGCGGTGCTAATTAAGTTAGACCTGACCCACGACCGGATCAGGTCTATTATTTAATTATGAAATCTTTGTGACATGTATTCTCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCTTCTCAATTTTCGGTATAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 32281-28704 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGUZ01000040.1 Bacillus sp. V3-13 contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 32280 36 100.0 37 .................................... ATCATATTGAAACATTCCTGGCTGTCATAAAAAACGC 32207 36 100.0 39 .................................... TCGATGACTGGGCTGTCAATCAGTGTCAAACCTACTTTA 32132 36 100.0 38 .................................... GGAGAAAACCCCCGGGTACACTAAACCGTGTTAGTCGG 32058 36 100.0 36 .................................... GCAGATAAGACCAAAAATGAATATTATATGTTTGTC 31986 36 100.0 34 .................................... CAGATTAAGCAATGGTATGAAAGAGGAGCGCTCA 31916 36 100.0 37 .................................... GTATCGCAAACGCCCCAACCCATAACAAAGGATTGGA 31843 36 100.0 37 .................................... AGAAGGCACAGATCCTTTTTTATCGGGGGATGATGAT 31770 36 100.0 39 .................................... ATACCAAGTGCAAATACGATGTGCATTGTTGACTGTGTA 31695 36 100.0 37 .................................... TGCTGATAATGCGGACGCTACGCATCCGGTTGTTATC 31622 36 100.0 37 .................................... AATCAGGTGCACCGTAACAGCCAGGAGAGATGAAGAT 31549 36 100.0 34 .................................... CACTGAAAAAGGAAATGGTCAAAGGGGCTATCGT 31479 36 100.0 36 .................................... ATAGATACTGGTAAGTTCTGGGTTCCTATAGTCCAA 31407 36 100.0 34 .................................... GACCTATTTCATTCCCATACTTAACGGAAGTTTG 31337 36 100.0 35 .................................... ATCACACACAGATTCACGATCATAAAAATCTTGGT 31266 36 100.0 36 .................................... CGCAACTATTTCTTGTTGACAACTTGCTTGCTCCTT 31194 36 100.0 39 .................................... GTGAATGTATAAGTTTTACCAGTACCACCTGTAATATAG 31119 36 100.0 35 .................................... TTAACTGAATATAATCGTTACTTGTACAGCACTTT 31048 36 100.0 37 .................................... TAACCATTCCTTTTCGCATTTTTTGCATCTTTGTACT 30975 36 100.0 37 .................................... ATTTGTACCGCACAAGGTTCGTATGGGGTTGGGATGG 30902 36 100.0 36 .................................... TGATCATGTGCATGTGAGTTGGACAGCATCCGGCAG C [30893] 30829 36 100.0 40 .................................... GGGGAGCAGGAGGTTGTTGATCGATGAGTCAAGGTGAAGT 30753 36 100.0 36 .................................... ATTTAAAAGAAATAAATAAAGAGTATTAATATTCTT 30681 36 100.0 38 .................................... TTGAAGTGGTCTAACACGATGATGGAGGCGCATCCTGA 30607 36 100.0 36 .................................... CAGCAGGCATGGTCATCGCAATGGGGCCGATCGGTT 30535 36 100.0 35 .................................... ATGATAGAGTCGACGCATTAGCAAGCAGTCAGGGG 30464 36 100.0 34 .................................... ATACAATACGTTTAATACCGGAGCAAACAATAAG 30394 36 100.0 36 .................................... CAACCAGGCCAGCCATGATTGTAGTTGTCGTGATTT 30322 36 100.0 37 .................................... GATTTCGTGCACTGGTCTCACCCTCTCCTTTTGTCTC 30249 36 100.0 36 .................................... AATGTGCTTAAAGAAGTCGGCAGTGCTATCTAAAAA 30177 36 100.0 37 .................................... ATTTAATATCACTTTCCTATTGCCTCCATTCCCAGCT 30104 36 100.0 36 .................................... TTAATAAAGTCAAAAACTATCACACATTCGTTATTA 30032 36 100.0 37 .................................... GTATAGTTGAGTACGGCTTAATGCTCCGCCTTCGGAA 29959 36 100.0 35 .................................... TATATGGCTATGTTTGCGAAAGACAAGCCCACCAA 29888 36 100.0 36 .................................... CCATGATAAAGGTAAAAGGTGTGAATTTTGATTTGT 29816 36 100.0 36 .................................... ATCTAGTTCCTGACTCGCTCTGATTGTTTGTTCATC 29744 36 100.0 34 .................................... GGACTCTCGCATGAATATCTGCCATCGATTACAC 29674 36 100.0 36 .................................... TTTCATCGATTGTTCTATCAGCAGCAATATCAACAA 29602 36 100.0 35 .................................... TATATGGCTATGTTTGCGAAAGACAAGCCCACCAA 29531 36 100.0 36 .................................... GTTGAAATATCTGTCACATTGCCGATTATCGGTGTT 29459 36 100.0 36 .................................... GTTGAAATATCTGTCACATTGCCGATTATCGGTGTT 29387 36 100.0 35 .................................... CATAGGTATTTTGATGCTGGCGATGAAGTTTATCA 29316 36 100.0 36 .................................... GGGCAGGGCGTGGATCCTTCACCTGATAAGTTCGGC 29244 36 100.0 37 .................................... TCTATATCTACTGGCAATATTACAAACGAGATATGAC 29171 36 100.0 35 .................................... AAGAAATGGAATCCACAAATTGCAATTGGATTTAA 29100 36 100.0 36 .................................... GCACATGCGCTGAACTTTGCGGATGTGGGTACCCGA 29028 36 100.0 37 .................................... TGTAGCAACGATTTTAAAGTCTATTCAAAGAAGCTAG 28955 36 100.0 37 .................................... TCCTTTCCTCAAGTACAGCGTACAGTTCTTTTGCCTT 28882 36 100.0 36 .................................... AATACAGATACGCTTGCCATTGAATCCATTAAGAAG 28810 36 100.0 36 .................................... AAGTAATTGAATGACCACCATTGCTACTGTATTTAA 28738 35 77.8 0 ......................C.CCCA...T-..A | ========== ====== ====== ====== ==================================== ======================================== ================== 50 36 99.6 36 GCCTGAATACTTAGCAGAAATAATGATGATTGGCAC # Left flank : GCAAGAAGCTGATCTGAAAAGTAAATTGGCTGATATTGTTCACCATCGTCAGGATCAAGTCATGTTTGTTCATATTGGTCCAGTTACAAGAGATCAACTAGATAAAAAAATCTCTACTGTGGGAAGAGATTACTTCCCTAGAGACTTATCAAAATTAATCTATTGAGATTATATTCCAAGAATATACTTGATCAAAAATGGACAGAATATTATAATAAAGGTGACCTATAGGGTCAATGAATCTGTGCGTGTGCCATAAGTAATTAAAAATTACCCACCACAGGATTATCTTATTTCTGCTAAGTGTTTAGTTTTTTTATTGTCGAGTACCCACTTAGGTCTAAAAGGCCAGGAGGTACTCGAATTCTTTATTTATTAAGGCATTAAGCTTCAATATGACCAAATTATTATTTGTTTTAAACCCTTTATGTTTTAGCATTTGGGCATACTCGAAATTAACTTCTCAATCACACTATTATCAACAGGTTCCACGAGCAGCA # Right flank : AAGCAATCAGAGACTGTGCTAATATTTTTATGCCACTGGTCCAGAAATCTATTTTAATTCAATCACAGCACAAGGAATTGAACAACATTTTAAAGATAAGATAGGCGATTCACAAATCATACGATGGTCTATATATTTAGTAGAATTACACATAGAATAGTAGATATCTATAGTTTATTAGTGTAAAGTATAGTAAAGTAGGGTAATTAATTACCAGTAGTCAGGTTAAATATTTCTATTCTTGGACAGGCTTACATATACATGAAAGTATATGGGGAGGTGTCCAATGAAGAAGAAGGGTGATGACGAAAAAATGAACACAACGGCTAACAGAAAAATTCAAAAAACTGAACGTAAAAAGAAGGTCCAAGCAAGTTTTGCAAAAGCAGTAGCACGCAATGGCAAAGCTTTGGAGAGACTAAGTAAGAATTAATGCACATTGAGTATCTTAATGTGGAAGATGTAGAAGAGTTACACGATTTAGCACTTGCTGAATATGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTGAATACTTAGCAGAAATAATGATGATTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 98156-104875 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGUZ01000027.1 Bacillus sp. V3-13 contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 98156 32 100.0 33 ................................ ATCGGTATTGCGAACAACAAACCGACAGAAACC 98221 32 100.0 34 ................................ ATCAAACTAACATTGGCAGAAATCAATCGTCTGG 98287 32 100.0 35 ................................ GTAAAATACCCGCCGTTAAGCCATTTTCACATAAT 98354 32 100.0 34 ................................ AACCCATACGGGACCGTGAGAAGATCGCGGCAAT 98420 32 100.0 35 ................................ TGTAGGCAATAAATCAAATGAAGTCGCGTTGTGTC 98487 32 100.0 34 ................................ CTTCATCATCTTCCATCGGGCCAAACATGCCGAT 98553 32 100.0 34 ................................ TTTAAATACATTGTTAGATTGTTTGAATCATGAA 98619 32 100.0 33 ................................ TCGTCGCTATACTCTGCAAACATATTTTCTACA 98684 32 100.0 35 ................................ CCTACATTGATATGGTTGACCACAACTGATCTGCG 98751 32 100.0 34 ................................ GAATTGTTGATGCTGTTACGCCATCACTCGGTTC 98817 32 100.0 33 ................................ AAGCTGTTTACGGTCTGAAACGGTTTTGTCGTA 98882 32 100.0 34 ................................ ACCAAAGCTGCCAAGAATCTTATTGAGAGACACA 98948 32 100.0 35 ................................ AGGACCCGACGACAGAAGCTTTTGAGGACAGCGAA 99015 32 100.0 36 ................................ GGTATACGACCGGCTACCAATTTCAACTATTTCATT 99083 32 100.0 34 ................................ CTCAGGAGTCAAACCTTCAAACCAATCTTTCAAC 99149 32 100.0 34 ................................ ACCTCACTCAAGAGAATCAGCGTCAGCAGATTGG 99215 32 100.0 33 ................................ AATTCTTTGACTTCATCGATCGGCGTATTTGGG 99280 32 100.0 34 ................................ ATGAAGGGGGGTAAATCCATGGCGGTACCAACAG 99346 32 100.0 34 ................................ AAAAATACACCGAAGACTTTACTGGAAATCGCTG 99412 32 100.0 33 ................................ GGTCAGAAAGCAACGATGAATTTGTTGAAATAA 99477 32 100.0 34 ................................ TTTTATCCATGCGATAACAATCCGTCCCCATTTG 99543 32 100.0 36 ................................ GCTTAATATCTTTTCACACTCTAACGCCAGTACCTT 99611 32 100.0 34 ................................ GATAAACCATTCATAAACGTGTTCATGCTGCACA 99677 32 100.0 33 ................................ ACTGTGCCTCGGAACCCACGTACAAAGTCACGT 99742 32 100.0 34 ................................ ACCAAAGCTGCCAAGAATCTTATTGAGAGACACA 99808 32 100.0 35 ................................ GTTTTGATTGAAGTATATGAATAAGCTGGCCACTA 99875 32 100.0 35 ................................ ACCAAGACCCCTCCCTAGTGATATAATTGATTTAG 99942 32 100.0 33 ................................ TTTTAAGAGGAACTCAACAAAGCCGTAATAACG 100007 32 100.0 34 ................................ TTGAGACTCGAAAGTTTCAAACGGCTGAAATCGC 100073 32 100.0 34 ................................ AACATACTGTGGATTGGCAGTAATATAGGTTCCG 100139 32 100.0 35 ................................ ATTGTGTGGATTATCAAAGACAACTAGATAAGCAT 100206 32 100.0 35 ................................ TTGGAAGATTAAAAACTCTGGCCAATCCATTTACA 100273 32 100.0 34 ................................ TCATAATCAGCAAGACCTTTTTCTGTCATCTCTG 100339 32 100.0 35 ................................ GGTGCAATGGATTTTGGAATAACAGCTATTGCCGT 100406 32 100.0 35 ................................ CGGTTTCCCTCCGAAATCATCCACCCACATATAAA 100473 32 100.0 34 ................................ TCTAATATCATTGGCACTCATCCAACCGTTTTGC 100539 32 100.0 35 ................................ TCGAGTTGAAAAAAATATACTCGGCCCCGAACCGG 100606 32 100.0 35 ................................ GTTATCTTATGAACTTATACCCGGAAAACACCAAT 100673 32 100.0 34 ................................ GGATAATCGGATAATCGCTTTCGTCCTTTTAGCG 100739 32 100.0 35 ................................ AAACTTACAAAGCGGCCGTTACTGCCGATAATCAT 100806 32 100.0 35 ................................ TCATATTGATTATTGTTGCCGCTAAATAATTGATA 100873 32 100.0 35 ................................ GTTATACGCTACCATCTAATCACCCCTTACGCGAG 100940 32 100.0 34 ................................ ATGAAAACCATCCAGTGTGTTTTGCTTCTCCGAT 101006 32 100.0 34 ................................ AACTGTAGAGGATATTTTTTTACCATAGTTGTTA 101072 32 100.0 33 ................................ TTTTATGCCCAAAACTTTTAACCCATCTGTTTT 101137 32 100.0 34 ................................ ATTCGGAAGGCAGGGATACATCATGGAAAACCAA 101203 32 100.0 33 ................................ ATCTTCGTCATAAAGTTGCATACCTGACAGTGA 101268 32 100.0 35 ................................ TCTAATTTTTCTATCGCAGTCCTGACCACTTTCAC 101335 32 100.0 34 ................................ TTGTAAAGATTCAAATTCCTCACGTTCAACCCAC 101401 32 96.9 34 ..............................C. AATTTTCGAATGTCAGAGGTCGCAGGATGCCTAG 101467 32 100.0 34 ................................ ATAAAGGACAAGATTGGAGTTGCAGGGCAGGAGA 101533 32 100.0 34 ................................ GAATCAAGTGTTGCAACACCAGCATGAACAGCGT 101599 32 100.0 35 ................................ AATTTGACGTTCACCTTTAATGTGCTGAACTAGTC 101666 32 100.0 33 ................................ ACTCAAACTGGTACCCTCCCTTCCTCCTTACTT 101731 32 100.0 35 ................................ GAAATCAAATTGGATTAAGGGTTGCTAACCGCCAT 101798 32 100.0 35 ................................ TGCAATGATTGCCCAACCGTTACTAGTTGCTGATA 101865 32 100.0 33 ................................ TCGACGCTGGTACAGATAAGTTAAACGAAAATA 101930 32 100.0 34 ................................ AATGGGTCTGCGGTGTTTCTGATCCCCAGTTTGT 101996 32 100.0 35 ................................ AGGGGCTCACACATATTATGTGCGAATGTAACTAC 102063 32 100.0 34 ................................ CTGATGCGCCTTTCGAGCTCCCTTTGCTTTTGAG 102129 32 100.0 34 ................................ AGAATAGCGCATCTGGAACTTATCCGTACACCAC 102195 32 100.0 33 ................................ ATACAGATGCCTGTGATTGCCCAACCTGCGGAC 102260 32 100.0 33 ................................ TCAAATCTCCTATGCTGATACCAATACAACAAC 102325 32 100.0 35 ................................ AGTAAAAGTGTTGCAAGTCATTTGAACTCCATGAT 102392 32 100.0 35 ................................ GGATATCTGAAATTCAACGGAATATGCCGGACATG 102459 32 100.0 34 ................................ TATCGAAGATTTGAATGTCATAGCGGAAAAATTA 102525 32 100.0 34 ................................ AACGATACTATCTGTAGTCATGTTTCCTTTCGGC 102591 32 100.0 34 ................................ CTCGATATAGACCTTGAAAGCCAAGACGGAGCTG 102657 32 100.0 34 ................................ ACGTCTTTGTCGCTGACCTCGTAAATCTCTAACC 102723 32 100.0 35 ................................ CTTTTCTTTTGATATTTTTGGATTAAATCATCCAT 102790 32 100.0 34 ................................ AGTTTTACCACTTTCAATCTTTTTAAACATTGTT 102856 32 100.0 33 ................................ ATATAATAAACATTATACGAAATTGTTAATTAT 102921 32 100.0 35 ................................ AACCTGAATTCGCTTGCGTTGTTACAAGAAAAATC 102988 32 100.0 34 ................................ AGGCCAAAGGGTGTCTCTCGATGGGTTAAAGAGA 103054 32 100.0 35 ................................ ATGTTTGATCAATTCATAAACTTTTATCCCGTCTC 103121 32 100.0 34 ................................ AACACGATAATCCGAATAGCCATAAAAAGGAGTG 103187 32 100.0 34 ................................ TGTTTTGGTTTATCTTTCATTCTTAGGTATTATC 103253 32 100.0 34 ................................ ATCACCACGATGCCAAATCTTCGTCAATATCCAA 103319 32 100.0 35 ................................ CTATCATATGACTATATTCAATGCAATCAACGATT 103386 32 100.0 35 ................................ AACTGTTTTATTTCCATATGCTTTGCCGTGATAGG 103453 32 100.0 34 ................................ TTTGAACGGGTCTTCAGCTTTATCGACTGCCGAC 103519 32 100.0 35 ................................ TGCTTCGCTATGGTTGCCAACGCCCTGTGACGCTT 103586 32 100.0 34 ................................ AAAATCAAAGGAGAACTTAAAAATGACACAACAA 103652 32 100.0 34 ................................ ATCGCCCCATGAAACCAATCGGGGTTTGCAGGAA 103718 32 100.0 36 ................................ CTGACTGTACCGCAGGATAGTGAAATGGTCGCCCAC 103786 32 100.0 33 ................................ AAACTGGTATTGAATGGAGAGAATTAAGCGTTG 103851 32 100.0 33 ................................ TCCGATACCATCAAAAAACATTCTTTTTCCGCA 103916 32 100.0 35 ................................ CGCAATCTGTGGGCGATTTACACGCATTACTAGCA 103983 32 100.0 33 ................................ CGTTTACAGCATATGATCCAATGGCGAAGTTTA 104048 32 100.0 35 ................................ ATATCATTGTGATTTTGACCGTATATCGAATGAAA 104115 32 100.0 34 ................................ ACGGGATTGAACGAAAATGATTGTCAAAAGTGGT 104181 32 100.0 35 ................................ AAGCTTCCGATATGAATAACATGCAACCCGGCAAC 104248 32 100.0 34 ................................ TTTACGATGAAAACACAGAAAACGAAACAAACAT 104314 32 100.0 33 ................................ CCAAGCGTCTACAAGTTCTACGCCGTCAAAAAC 104379 32 100.0 34 ................................ CCGTATTTGTGAACTTTTATAATAATTATAAACT 104445 32 100.0 36 ................................ AGCAGGAGCAGGCTGGTTTTCGCCCTTGTATGTGAC 104513 32 100.0 34 ................................ ACAAGGGGTGGAAACAAGGATGGATATACCTAAA 104579 32 100.0 34 ................................ TATAAAATGTAATTTGCCGTTTATTTCCAATGAT 104645 32 100.0 35 ................................ AAGTCGTCCGAATAATAACCGCCTGCCGCTTCATA 104712 32 100.0 35 ................................ AAAAAAGGGCGCCCCCCTGTATGCGTTTAGGATAT 104779 32 100.0 33 ................................ ATAGAAGTGCAAAAAAACATCTACTCCGAAAAG 104844 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 102 32 100.0 34 GTCGCATCCTACATGGATGCGTGGATTGAAAT # Left flank : TTAGATGAGTACCCACCATTTTTATGGAAGTAGGTGTCACATTTGTTAGTATTAATTACGTATGATGTTAGCACGGTTAGTAGTGCAGGACAAAAAAGGCTGCGGAAAGTCTCAAAAATTTGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTATTTGAATGTATAGTAGATGCAACTCAATTTGCCACGTTAAAAATAGAACTGGCTACTATTATTGATGAAGATCAGGATAGTCTAAGATTCTATCAGTTAGGAAATAATTATAAAACCAAGGTAGAACATATTGGTGTGAAAGAATCAGTCGATTTGGAAGACCCTTTAATTTTTTAGTGCGAATGTATAGCTCACATTAATTTCCGGATACATTCGCACCTAAATTTTTGTCTTTTATTACGGAAATTTGTTTTTTTATTATTAAGTTCTTTATTTAATAAAGAAAATAGTGTGTTTTTGATCAAAAATCACGTCTTTCTAAGTCGTTTTGATCGAAAATCGCT # Right flank : TTAGGTTGTTGTCTACATCGGATATATTGCGATCATGTCGCATCAATGCTCATATGATATGGATAAGTCATTTTGACAGGACAATATATCCACGAAAAAGCCTCACCCAACAAAATCAGGTGAGGCCTTTTTCCTTTATTCTTTTCCAATCATCCACTTCTCTAAATCACAAACAACTTTGCCATCTGAATAAAAGCTGATGCTTTTATCCGTTACATCCGGAAAATATCTCGCTGTAAATAATTCTTCTCCATCATTCACAAAAATTTCAATAGAAGATGTATCGACAAATATCTGTAACTTGCCAAGCATACCTAAATGACAGGCCCTTTTTTCGATCGTCCCGTCTTTAAAGTTTTTTCTTTCCAAAATTAATTGTTGCAAACCTGCATGATAAACAATGGCTGCGTTATTTCGCAATTTGATTTTAAATGTTTCTGCTTCAAACTTTTTAAAGTTCAGGATCAGTTCCACTGACCTTCCGCCAACTTCTTCAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.50,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //