Array 1 188257-186519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUS010000006.1 Salmonella enterica subsp. enterica serovar Brunei strain FW-H3-Mar NODE_7_length_340310_cov_136.002090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188256 29 100.0 32 ............................. GGTCCGAATACGCATTGAGAACAATATAGAGC 188195 29 100.0 32 ............................. TCACTCATTTGTCCTCCATTGCTCACCGAATC 188134 29 100.0 32 ............................. CTACTGAAATATAATGGTACGCCCTGTAGGAT 188073 29 100.0 32 ............................. AGATGAATATGTCTCAGTCCCAGCTGGCAACA 188012 29 100.0 32 ............................. AGAAATCAGGTCGAGTGAGTACGAACCTTATT 187951 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGGCCGTATT 187890 29 100.0 32 ............................. CGTAGAGGGATATTCCACAGGCGAACGCACAA 187829 29 100.0 32 ............................. GCGAGTAACAAAGGTTGAAATGTGCTCATGAT 187768 29 96.6 32 ............T................ TCGCTTGCGCTCCGAATGGGGCGCACACTTTC 187707 29 100.0 32 ............................. TTCGTTCTAAACAGAGATGGTTGGTTAGATAT 187646 29 100.0 32 ............................. AAACCGTTAGACGTGGTATAGCCAGGGTTTGC 187585 29 100.0 32 ............................. CAAGGTTTCTGAAAATGAGCGCGTTTCCGTTC 187524 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 187463 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 187402 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 187341 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 187280 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 187219 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 187158 29 100.0 32 ............................. GGAGCACGGTAAACTACTGGCGCAAGGGCCGC 187097 29 100.0 32 ............................. CACCCCCTCGATCCATAACCCCCTTTGTATCC 187036 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 186975 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 186914 29 100.0 32 ............................. CCAAAAGAATTCTCAGCATATCTTTAAGTATT 186853 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 186792 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 186731 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 186670 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 186609 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 186548 29 89.7 0 A........T..T................ | A [186521] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCTGTATCAGCCGGACTCCCGTCCCAGCCTTATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGAACCCGATGAAGCGCAGCCTTATAGTCAGGGATGCGTCGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 197883-197489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUS010000006.1 Salmonella enterica subsp. enterica serovar Brunei strain FW-H3-Mar NODE_7_length_340310_cov_136.002090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 197882 29 100.0 32 ............................. CCCGCGCACCTGGCATCGTTCACGTTGAACAG 197821 29 100.0 32 ............................. CCTTCTTTCGTATGCACGAACACCCATTTATG 197760 29 100.0 32 ............................. GTCACGAACGAACCAGGCAATCATCGCGCACA 197699 29 100.0 32 ............................. CCGGTTTGATAATTATAAATCAATTGGCAGGA 197638 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 197577 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 197516 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //