Array 1 817965-817428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKMZ010000002.1 Rhizobium sp. CECT 9324 isolate UB30; 170327 A5M 09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 817964 37 100.0 42 ..................................... GTGGAGGAGTATTTCGGGAAATCGGCGATGCGAAAAAAAAAA 817885 37 100.0 33 ..................................... CCTGCACGTTCAATGCCTGAAGCGGCAAGTACG 817815 37 100.0 31 ..................................... AGGAATTCCTGATTGTTCAATCCAATATAGT 817747 37 100.0 35 ..................................... TCGGGCGCGTTGCACGAGCCTTCATGGCGAGGAGG 817675 37 100.0 36 ..................................... ATGGAGACCACCCAGAGCCATACCGCGAGAGACGCG 817602 37 97.3 31 .....T............................... TGCGAATCGCAGGTGAACGTCAGGTTGTACT 817534 37 100.0 33 ..................................... CCGCAGGCGTTCGGCTTCTGCTTCGGCTGTGCT 817464 37 70.3 0 .....T...C.........T...A.AC..G...GGTG | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 95.9 35 GTGAACGGTTTCATCCCGCATGGTAGGGAACTGAAAC # Left flank : CTAATCCCGCAACAGCCGCCCAACTATCATCGAACCTCGGCACAGGTGATATTCCTATGTTCAAGAGGATCCGCGACGATTTGAAGGCAGCTCGAGATGGTTCCTGGGACGGACCCTATCCCCTGGCTGGACCCTAGTCCCGTTCCGGACATCGCCAACGGCCGATCTCAGCATATTTTATCACCGGTATGCGATGTTGGGCTGTGCAGAAGCTGCACAGCCCTCTTTCATCGTAGGCTCTGCCAAGCTGGGCTCATTCAAGTCCAATCTTCTGAAATCGAATAGATTTTATTCGATTTATTCCGCTCAGTCTCAATCGAGGTCCACGAGAAACCAAGAGCTTGGTATGTGGAAGTTTTCTATCTATCTGAATTTAAAGAAAAATACACAACGACTATGTAGAAGTATGAGCAATATGACGTTCGTGTGGCGCAGATTTGGTGCGGTATGTGGAAACAGCTTGATTGATGTGAGATATTCTAAGATCTTACAGATGTTAG # Right flank : AGCGCGTTTGTCTGAATCGTGATTGCCGGGAAATCGGAGTTAGGGTCTGAATTCCAGCCCTTGGAACAGCTTGCGATACCCATATCGGGATTGTTATTTTTTGATGAGAACAACAATACCAATGGTCAGAGCCACCGCAGCCAAACAGACAAGGAAAACCTGCGCGCTCCCTTCAACCCCGGCCAGCATTCCAAAAAACGCGACAATCCCTGTCAGGACTGCGCCAGTCAGAAGCATGACAGGCACGATAGCGAGCCCGATTTCCGACAGGCCGATCAGTAAAAACAGTAACAATAGAATAAAAATGACCACGGTGAGATCTCCAGTTGACGGCGATCATACCCCGCCCCGCGGGACAGGGCGCGCAAGACAGCAAGAACGTTTTGTAGACATCTTGTGACCTACGCCAAATCGGGACGAGGAAACCTGATTTACGTCTTGCGAGAGCTTTAAAATTCCGCTCTGTTGCCGCTTAGGACTGTCTTCAGGGGTAAATATGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACGGTTTCATCCCGCATGGTAGGGAACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 826041-825355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKKMZ010000002.1 Rhizobium sp. CECT 9324 isolate UB30; 170327 A5M 09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 826040 37 100.0 35 ..................................... TCCTCGTCACTGCGAAGAGGGTTTCGTGGATTGAG 825968 37 100.0 31 ..................................... CGGATACAATCCGGAGCGTGGCCACCCTCAC 825900 37 100.0 37 ..................................... TCCAGCTCGTGTCGAGCATGACCTTGTAGGCGCAGAA 825826 37 100.0 37 ..................................... CATCGACCTTGATGGTGACGAAGTTGCCTTCGGCCAT 825752 37 100.0 32 ..................................... CTGCACAGTTGCACCATACATCATGCCTGCAG 825683 37 97.3 34 ....................................G GCGCCGGGGCTGACTTCGTAGCCCCGAATGTTGG G [825662] 825611 37 100.0 32 ..................................... AGGTCGGCATCGCCCGTGTCGAGGGTGACATA G [825590] 825541 37 97.3 32 ....................................T TCCGACGAATCGCGTCGACGTATCCGGTCCAG G [825520] 825471 37 100.0 42 ..................................... TTGATACTGCACCTTGACGGGCAGATGCACGAAGCTGTTGTC G [825450] 825391 37 67.6 0 ......................G.A.AG.AACTGGGG | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 96.2 35 GTGAAGGGTTTCATCCCGCATGAAGGGAACTGAAACC # Left flank : AAGTGTTGGATGACGAAACTCAGCAGCATGATTGGCACAGGCGCTCGGGCCGAACGGGCAAAGTGGTGGCATCCAGCCACGCGACAGGCAGCCTGGTGATCCGGGGCGGCCTTGCGCCACTTGCTCCCTTTCTATCGCTTCTTCCTGTGTGCCACGCCGGAAAGGACACACGCCTTGGTCACGGCTGGTGCGCTGTTAACGGCCGTGATGCATACACAGATCTCGCCGGCGCCTTCGCGGTTCGTGCGTAAGCATCAGCCGTTGAACCGTCTTGTTCCGGCAGGGTTATCAATGACCTAGCCGACTCTCGAATGCGACCTGCCATCGTGCAGGCGGCTACCGAGGTATGTGGATAATGAACAGCGCATTGATAAATATAATAAAACTTCTCTTAGTACGTGAAAAATTTGCTCTTGTGGCTCGGCCCAAAAGAACACCTGTCGAGGTATGTGGAAACACCTTGTTTTTTCTCAACCGATGTGGAAGCTTGCGAGGGGCAG # Right flank : CTGTTTTCGGTGACCATGCCGGAACCTAGCCCGATCTCGGCCCAGGTTTCCAAAGCGTAGCTTTCAAAATGTGATTGTATCTCAAAACATGACGTATTTTTTGTTGCGGGGAACACAAAATTTCAATTTTAACGCTTGCACGCTTTAGTCGCATATCGCAGTCTGTGGCTAATATTATGGGGCGTGAGAAATGCGGCAATTTGTTGTACGGGTAGAGGCAGTTAATCTTGCCTCCTCAATGTTTGATACTGAAGATCTTTCAGCAATTCGCGGTGGAAGTTTCGCTGCGCTGGAAACTCCTGGCGCCCTACTGGGGGCGCTTCACGCGCTACGGGTCCAACCTGTGTTTGCAGGCGCATCGCAAGCTATTGCGGTTGTGGATGCTTCCGACGAGATGACGGTTGCCGGATTGGAAACTGTGCTGGATGCGCTGGCCGCCGGCAGTGACCTGCCGGATGAATTTCCACAAAGAATAGCCCAGGCTTTGCCTTTCCTTACAG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAGGGTTTCATCCCGCATGAAGGGAACTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //