Array 1 52-565 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ATHK01000098.1 Salmonella enterica subsp. enterica serovar Infantis str. 335-3 contig_84, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
        52	    29	  96.6	    32	.............T...............	ACATCTCGCGGACAATAGCGATTTCCACCGTC	
       113	    29	 100.0	    32	.............................	CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG	
       174	    29	  93.1	    29	.............T..............C	CTTGTTAAATACAGGCGGCGGCGGGGTTG   	
       232	    29	 100.0	    32	.............................	AACGGCGACGGGATCGTTTTTTGTGGCGAAAA	
       293	    29	 100.0	    32	.............................	CAGGATTGGATTAATGAAGACGGGTACGAAAT	
       354	    29	  96.6	    32	.............T...............	AGATTGCAGAATTATATTTCACGCTGGCAGCA	
       415	    29	 100.0	    32	.............................	CTGTTGTTATGCGTTGGATCGTAATAGTTAAC	
       476	    29	 100.0	    32	.............................	CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA	
       537	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         9	    29	  98.5	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGCCAGCGGGGATAAACCGGGCGTTTTATTCGACCTGAAAAAATGGATCGTG
# Right flank :  GTCTTATAAATTGGGCTGATAGTGCCGCTGATGTGTTCCCCGCGCCAGCGG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   GTGTTCCCCGCGCTAGCGGGGATAAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.24,0.41   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//