Array 1 5297-5059 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVV01000015.1 Rhodobacter capsulatus strain A52 scaffold22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 5296 37 100.0 30 ..................................... GTGACCGTCGCCATCAGAACGCCCCCGTTC 5229 37 100.0 29 ..................................... AATATCAGTGACCCCCCGACATCAGTTTT 5163 37 97.3 28 ...........C......................... CCACGGGTTGCTCTCCAGGCCTGTGTTG 5098 37 86.5 0 ..........GC.................A....G.G | C,AG [5062,5065] ========== ====== ====== ====== ===================================== ============================== ================== 4 37 96.0 29 GTCTGGCACCATGTCCGGCGGCCCTGCCGGTTGGCAC # Left flank : TTTGCCCGAATGGCGCAGGATGGCACCCCCTGGACCCCCTACAGGATGAAGCACTGACCATGGCCGACCGTCCGCAATTGCGTCTGATTGTTTACGACATCGCCAGCGACCGGCGCCGCCGCAAGGTGGTGGCGTTGCTCGAGCCACGTGCGGCGCGGGTGCAGGAAAGCGTGTTCGAGGCGCGGCTGAGCCAGGCGCAACTGACCCGCCTGCGCGTCAAGCTGGAGGCGGTGATTGCCCCCGAGGATTCGCTGCGCATCTATACCGTCCCCGATGCCGCCCTGCGCCGCTGCCACATTCAGGGCGGGCCGATGCTGGCAGACGGGGCACGGTTCTGGCTGATTTGATCGCCGGGACCCAGTGGAGTGGCGAAAGTTTATCTATCACAGTGGGTTAGGCAATGTCCGTGGGAATTATGTAATCCGCCTCACAGCGAAATGCCTAACCTAGTGGAAAGTGGCCAAAAAATCCCTTGTTGACAGAGGGCTTCCAGAGGCTCA # Right flank : TGCGTACGGTGATCTGAGGGAAAGGCCCGGCTCAGCCGAGAGCGGCGAGAAGCGCGGGCAAGGGGGGGCTGGCGGCAAGGCCCCAAAATCCGCGCCGGGGCAATTCGCCACCGCGCCAGCCGCCGGGAAAGGCCGCATCGAGCCGCGCGATCCGCGCGCCCGCGCCAAAGAATTGCACCGTATCCGGGCACAGGATCAGAAGATCGCGCCGATCCCCCGCCGCCACCAGCGGATCTGCCACCGTTGCGGTGCGCCCATGCGGCAGGGTGATCACGATCAGACTGCCCGCCAGCGCGGTCTCGGCCTGCGCCAGCGCCGCAAGGCCCTGCGCCTCTTCCTCAGCGGTGATGCCCTGCGCCTGCCGATCGCGGCGGCGGATTTCGGCGATCTCGGCGGTCGTGGCGCCGAACCGCTCCAGCGCCGGAATGTGGCCGATATCATTGGCGGCAACCAGTTCGAAATCCCGCGTCCAAAGGCTTTCGGGCAGATCGAGCAGCGTA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGCACCATGTCCGGCGGCCCTGCCGGTTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 96253-92281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVV01000005.1 Rhodobacter capsulatus strain A52 scaffold13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96252 29 100.0 32 ............................. CTTCGGACCAACGGCGTCTATTACATGGATGA 96191 29 100.0 32 ............................. GCAAAGGGCGATAACTTCGCGCGCCAAGTCCT 96130 29 100.0 32 ............................. ATCCCCGAGAGCATGGCGCGAGTCATGGCGCC 96069 29 100.0 32 ............................. CGGCATCATGCCGTTGACCCAGGTCGATTTGG 96008 29 100.0 32 ............................. GCGAAATTGATATTCTCGTCCATGCACCCCGC 95947 29 100.0 32 ............................. GACGCTGAAAAATGGCTGAACGTGTCACGATC 95886 29 100.0 32 ............................. CGGCGTTGCGTTATGCGGCAGCAGGTCAGACA 95825 29 100.0 32 ............................. CCGCCGACCGATGTAGTCGCTTTGCGCAGGGC 95764 29 100.0 32 ............................. GTCGCGGGTCGCATCATCAACCTCGACACCGA 95703 29 100.0 32 ............................. CGACCCTCGCGGCGCTGGAAATGGACCAGATC 95642 29 100.0 32 ............................. GTTTCAGAGTTCATGCTGATATCTCCACATCA 95581 29 100.0 32 ............................. CATTTGCAAAAGCCGGGGCGATGATCGCCGAA 95520 29 100.0 32 ............................. ATCTTCGGCGCGCGTGATCGGATATCCAGCGA 95459 29 100.0 32 ............................. GTCGCGGGTCGCATCATCAACCTCGACACCGA 95398 29 100.0 32 ............................. GGCCTCGGCGCGTGGGCCGCTGGCGGTGCTGG 95337 29 100.0 32 ............................. GCCGAGATGGATCAGGGCGCGGTGGTCAACTG 95276 29 100.0 32 ............................. CGTCATAGTTCCAGAGGGTCCGATACCCCGGA 95215 29 100.0 32 ............................. GTCGATGTGAAGCCGGGCGACGTGGTGATCTC 95154 29 100.0 32 ............................. AACCTGCTGCGCTCGACGCGCCGCTGCGGGCC 95093 29 100.0 32 ............................. ATCGAGATCGATGGTGCGACAATGACCGAATG 95032 29 100.0 32 ............................. GGGATCCTCGTTCCGGCCGATGTGCTGCGCCG 94971 29 100.0 32 ............................. GAGCCAAACTGAACATACCCGGTTCCTTTCGG 94910 29 100.0 32 ............................. ACGAAATGGGTCGGCGCTGGCGGCGAGACTTC 94849 29 100.0 32 ............................. GAAATCCATCGGGTCGAGACGCGACAGAACGG 94788 29 100.0 32 ............................. GGGGAAACATGGCCGACGAACTCACGGCAAAA 94727 29 100.0 32 ............................. GGCGTCAGGGCGCGCTCATGGCCGCTTGGAAT 94666 29 100.0 32 ............................. CTGTCCGATCGCGTGCGCCGCCTCGAACTGAT 94605 29 100.0 32 ............................. GCGCTCACGGGTGGTCTGGTCTGATGGACTTT 94544 29 100.0 32 ............................. GCGCAGCGTTCTCGCGGCGCAGGTTCGCGTTT 94483 29 100.0 32 ............................. CCCTGTGCCGTAAACGTTGCCTTTCTTGGTGA 94422 29 100.0 32 ............................. GTTTGGTATGATACAAACATGCCAATTCTCAG 94361 29 96.6 32 ............................T TACGTTATCACGTTCAGTTAAAACAAATCTAT 94300 29 100.0 32 ............................. ATGAATTGCTAGTTTTGGCGCTTCGCAAACTA 94239 29 100.0 32 ............................. CGCAGATCGTGCTCGGCTTCCGCGCGGCGAAC 94178 29 100.0 32 ............................. ATCGGCACCAACCGCATTCAGCCGCGGCTTGA 94117 29 100.0 32 ............................. GGCCGGTGGGTTCGGGGAAAACGACCACGCTG 94056 29 100.0 32 ............................. GCACCTGAGACTTCGATGGTCAAGCACATCGA 93995 29 100.0 32 ............................. GTGTCGTTGGCCTTGGAAACCGGCACCGGCGT 93934 29 100.0 32 ............................. TTCCCAGGCCTCGCGCACGCGGCCCGTGGCGT 93873 29 100.0 32 ............................. GTCGACAGCCTGCAAACCGAGACGCACGGCGC 93812 29 100.0 32 ............................. CAGAGCCATTTCGTCCCGCGTCAGCGGGTGAG 93751 29 100.0 32 ............................. GATGCCACTGCATGTTGCGCATGACGCACCTT 93690 29 100.0 32 ............................. CTTCTGACCACCAAGAAAAGCGGCATTAAGCC 93629 29 100.0 32 ............................. CCGTAGTGACGCCCCTGCAAGAACATCTTCGA 93568 29 100.0 32 ............................. GTGATCAGCTTGGAGGCGACCCAGCCCACGGA 93507 29 100.0 32 ............................. CGACGCGATCACCTGATAGTGCGTCACCGCCG 93446 29 100.0 32 ............................. ATCACCTCGGCCGTTGCGATTTCCGGCCGCAT 93385 29 100.0 32 ............................. CCCTGCATGAAACTCGCGTGACGCTGGATAAC 93324 29 100.0 32 ............................. CTGCGGACGAATGGCGTCTATTACATGGATGA 93263 29 96.6 32 ............................T CCGGTCGCGCAGGGCTTGCAGCTTGTCGAGGC 93202 29 100.0 32 ............................. ATTTTCGCCTCGCTCCCGGCGGCGTCGGTGAG 93141 29 100.0 32 ............................. TTCATTGACGGGGTGGCCCGCGCGGCGGCCGA 93080 29 100.0 32 ............................. CTGTGGCCAACACGACGCCGCCCGCGGCAATG 93019 29 100.0 32 ............................. CAGGATCGACGGGTGCGCCTTTGGCCTTGCGA 92958 29 100.0 32 ............................. CGAGAACGGCTTTTGACCGGCGGCAGTGATGA 92897 29 100.0 32 ............................. TTCCAGCCGGGCGGCGAACTTGCCGGGCAAAC 92836 29 100.0 32 ............................. ACGGGAGCGTCGAGCTCCTTGTGATGCAGCCG 92775 29 100.0 32 ............................. GGGTCCGAGGGCGGGATGCTTTCGCAGACCGT 92714 29 62.1 10 ..............N.TC.A.C.CCTTGT GATGCAGCCG Deletion [92676] 92675 29 100.0 32 ............................. GGGTCCGAGGGCGGGATGCTTTCGCAGACCGT 92614 29 100.0 32 ............................. CCGAGCGGCTGGCGAAATATCAGGCCGTGGCG 92553 29 100.0 32 ............................. AGATACTTGCAGACGTAACGGGCGGATTTTTC 92492 29 100.0 32 ............................. GAAGTTGCCCTGCAGCGCGGCATCAAGGGTGC 92431 29 100.0 32 ............................. CCTTAGTATGCAGCGGGGCGCGGTTAAAAGTG 92370 29 100.0 32 ............................. CCTTGAAGGAAGGGCGCCCCGAGGTCGATTTC 92309 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 66 29 99.3 32 CTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CTTCTGGGCCGGATCATTCCCGCCATCGAGGAGGTCCTGACAGCGGGCGAATTGCCCCGCCCCGAGCCGCCGCCCGAGGCGATGCCGGTGGCCTTCGAGGAAGGTCAGTCGGGCGATGCGGGGCATCGGGGATGATGGTCGTGGTGATCTCGAACGCGCCGCCCCGGCTGCGCGGGCGTCTGGCCGCCTGGCTCGTCGAGGTGCGGGCGGGGGTCTATGTCGGCGATTATTCGGCGAAAACCCGAGAGATGATCTGGGAGCAGGTTCTGGCGGGGCTCGAGGCGGGCGATGCGGTGATGGTCTGGAAAGCCCCCACCGATCAGGGCTATGATTTTCGGACCGCAGGCCGAAATCGCCGGATGCCGGTGGATTTCGACGGGCTGAAGCTGGTGAGTTTCAAGCCGGACAGGTGAGGCCGTTCTGAAGCGGAAACCCGGAGAAAATTCGGTGCGCTCTTTGACATTGTGAAAAACTTGGTAGATCAATGGTCTGCAGCAAGA # Right flank : ACCATCGCGAATGTGGCCCCCCTGCGCAACGTCTGTTCGCCGCGTCGCGGATGCCTTTCAGCTCGGCCGCCTGCGCCGTCACCTGCGCCTGCAGCGCGATCAGCGTGTCCTTGCCCGAGACCGCCAGGCGCGCGGCGGCGATCAGCGCATCCCGGTTGCCATCGACGCCGAGGATCGTGCCCAGCTCGGACTGCAGGGCCACATCCTCTTCCGGCTTGCCCTTCGCCCCGGTCATGGCTTCGACCGCGGCGATGATTTCGTCGAGCGTCGCGGTTTCGGCCAGGCCGAGCGCGCGCGCCAGTTTCGTCAGATCCATGTCGGACTCCGAGTTGAGCGCGACGAGGCCGCGCAGGTTGGGGTAATTGACCAGGGACGCCCGCGCGATCCGGCGCACCGTGCCATCGGCGGCGTGGATGATGACGGGCGAGATCCCGCGATACGCGCGCTCGGCCAGCAGCGCGACACCCGCAGGGTTCCATTCGACCTGCCCCCAGACGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 259-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVV01000065.1 Rhodobacter capsulatus strain A52 scaffold68.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================== ================== 258 28 86.2 28 -.........................CGG CTGCATCACAAGGAGCTCGACTCCCGTC CT [252] 200 29 89.7 30 ..........................GTT TGCCCGGCAAGTTCGCCGCCCGGCTGGAAC CT [193] 139 29 100.0 30 ............................. TCACTGCCGCCGGTCAAAAGCCGTTCTCGC 80 29 93.1 0 ......T.....................G | ========== ====== ====== ====== ============================= ============================== ================== 4 29 92.2 30 GGTTCACCCGCGTGGGCGGGGAACAGTCA # Left flank : TGGGCGGGGAACAGACGGTCTGCGAAAGCATCCCGCCCTCGGACCCC # Right flank : GCAAGGCCAAGCGCACCCGTCGATCCTGCGGTTCATCCCCGCGTGGGCGGGG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCACCCGCGTGGGCGGGGAACAGTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //