Array 1 165836-165685 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYF01000004.1 Streptomyces sp. WAC04657 WAC04657_unitig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165835 29 100.0 32 ............................. GTGCACCGGGCGCTCCGCGAGGAGGGCCTGAT 165774 29 100.0 32 ............................. TCGGAGGCGGAGCGGCTCGCCGAGCAGCTCGC 165713 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Left flank : CTGGGACGACGGCAACACCGTCGTCAGCAGCGGCCGCAACTGGAGTGGCACGGACCACCTTGACATCATCCCGGAGACCCCCAAGCCCTCGAAGCGGCCCGACCCGGACGACACCACCCCAGGGGAGTCAACCCCATGAGCCCCGGCACCACCGTGATCGTCCTCATCGCAGCCCCGCCCTGGCTCCGCGGCCACCTCACCCGGTGGTTCGTCGAAGTCGCCGCCGGCATCTTCGTCGGCAACCCCAACCCGCGCATCCGTGACCGCCTCTGGGCCACCCTTACCGACCGCATCCACGACGGCCAAGCCGTCATGGTCGAACCCGCGACAACCGAACAGGGCTGGACCACCCGCACCGCTGGCCGCGACCGCTGGACCCCCGTTGACTTCGACGGCCTCACCCTTATCGCCCGCCCGCGCCAAGACGGACAGGTGTGGCGTCCCCAAACTACGTGAAACAGAACAGCATGATCGCGTAACAACACCACAGGTCACCAAGT # Right flank : CCGTCGATCCTCCACGACGGCAGCACCGCCTAGGGCGTTTCCTTCGGATCATCCGGTCGGATCGCTCTGAGTGGAGCCGCATGGGCGATCATTGAGGCGTGAGCACGGATTATTGGGTGGTCCTCGGGGACTCCGAGCGGCAGCAGTGGCGGTACGCCCCTTTCCGGACTATTGGGCCACTGGATTTTGGAATGAGTCGGGAGGACGTCGTCGCCGCCATGGCGAAGCAGGGCTTCACTGCGGAGCAGCACAATATGGGTGGTTGGCACTCGACGGGCCGCACACAGTGGCGAGCCGAGTTCTCGAAGCCACAGCCGCAGCCTTGGAGAAGTCGGCCAGCGGTGAAGTGTTACTTCGTCGAAGGGGCGGGGTTGACGTGCGTGCTGGTGGATGGACGGCTGGGCCCGCAGGTCACCCACGAGGGAATTCGCCTGATCGGCCGGATTCCTTCGGAGCTCTTGGAGGAGATGGAGTCCTACGCCGACCGGCACGAGGTGGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176424-176817 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYF01000004.1 Streptomyces sp. WAC04657 WAC04657_unitig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176424 28 85.7 33 ......T.......C..........TC. CCCCCAGGTCACGGGCGGTTTCACCCTGCAACT 176485 28 82.1 33 ..............C......A.G.AC. CATCGGCGAGTCCCTCGGCTACGAGCTCATCAA 176546 28 78.6 33 C.GC..........C..........TC. GAGGATCTTGTCCTCGGGGGTCACGCGAGTCGC 176607 28 78.6 31 ..............C.......GCT.CT TATGCACGGTCTGATCAATGAACGGCGAGTC 176666 28 100.0 33 ............................ GGAGCGCCGCATCGACACGGTGTGGCGTAACCC 176727 28 89.3 33 C.......T.....C............. AGCAGGCCTCCTGCTCGCGTTCGTCGGTGCCAT 176788 28 71.4 0 .........A....C..C.C..C.CGG. | TC [176807] ========== ====== ====== ====== ============================ ================================= ================== 7 28 83.7 33 GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Left flank : CCGGTTCGTCGGCAGCCGCCCCCATTTCAGACCTGCCGCTAATACCGGCGCGGCCTCCGCCGTGTCCATCGCCTGAAACGCCGGACAAGCCTTCCCGCAGTCATGAATCCCGCATACCCACATAAACCACATTCGGCCCCGGCCACCACTGACCTCGTCCAGTCGCCGCCGAAACGCCGCCGACAAGTACCGGTCCCACACCACTCCGGCCACGGCCGCTGTATCCAGCAGATGCCCCAGCAGCAGATGTGTCCGACCACCATTCCTCGCCGCCGACTTGCCCCACAACCGCGATACCCGCTCCACGGCCTCCGGCGACAGCCCCATCGCCTTCATCAACGCGACGACTGAACTCCCATGGTCTGCCATTGCTACCCCCAGCGCCAAAGTCCTGACACCCTAGGCCCTGGCACTGACAACGCCTCCAAGCCGGCCGCCGGAGCGAAATGCATGTAAAGGAAAACCGTAGCCGCTGCTAGCATCACCGCAGCTCAAGAAGT # Right flank : CGCCGCAGCGCCCGCTACCCCGCAGTCCAGCGTACCCGCCACCACCCCTCAGGGAGCCCCCTTGACCACCAGCCCCGCTTCCGGCGAGCAGCCCTCGCAGGAAGAGACCGGCCGGGCCCAGGCCCTCAAGCAGGCCGTCGAGGCCCCATACCTGGGCGCCCCGGCAGACCAGCCTTCCCCCACCGCATAGGCCCCGGGCCGGCAAGCCGCAGGACCCGGAGGTCGAGCACGGAGTGCTGCTGCGGGCCGCCGGCGTGGCCTCCGCCGAGGTCGTCGCCCACCGTCACACCTGGGAATGGCTCGCCGCCCGCGCTGCCGACCACGACCACTTCCGCACCCCTTCGGCCGTTGACGACCTGCCCGACGGCCGCATCAGGACTACCGTCTCCGGCCGCTCCCTGATCGCCCTGCTCATCGTGTTGTGGGAGACCCGGGAGACTGCCGGTCTGAACGGTGACTGGGCCCTGGCTTCCACCACCTACCAACGCGCCGCCATTGTC # Questionable array : NO Score: 3.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5996-5355 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYF01000005.1 Streptomyces sp. WAC04657 WAC04657_unitig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 5995 30 100.0 31 .............................. GGACTCCGGCGCTGTAGGCGACGAGCTGGGG 5934 30 100.0 31 .............................. CGATCGAGGCCGTCCGCGGCGCGGTGGCGCT 5873 30 90.0 31 ...........ACC................ GCTCGTCGAACACGGCCTCACGGACGGCACG 5812 30 90.0 31 ........T...CC................ CGAAGTCGACCACGTCAGGCGCTCGTGCCGA 5751 30 83.3 32 ............CC...A.....C.....T GGGAGGTGTTCGAGGACGACCCGAAGACGGAC 5689 30 90.0 31 ............CC...............T CGCCACGACCCTGCTGTCCTTCGAGGACTAC 5628 30 86.7 31 ........T...CT...............G CCATCACGACGCGCCTCTCGCTTGGCGACAC 5567 30 93.3 31 ............CT................ ACAAGTACGCGCAGATCGGCCTCGACACGTT 5506 30 90.0 31 ......T......T...............T TCGCCTCCCACTCGGTGGACCGCTCCTCGAC 5445 30 80.0 31 ........T...CTT.........A....T CCTGGTTCGTCCAGGGCCCGGACCTGGGCTT 5384 30 66.7 0 ........T...CTT.........TGTGAG | ========== ====== ====== ====== ============================== ================================ ================== 11 30 88.2 31 CTGCTCCCCGCGTGCGCGGGGATGGACCCA # Left flank : GTCTGCCAGCCGCCCGGTCGTGGCTGACACTCGTGCACGTCGTCCCTCAGCTCTGGACCGGTGCTGTTGAACATGGGTGCTTCCAGCAGTGGGCGCTTGCTGCACGCAAAGACCAGATGACCGGAAAAGCCCATCGAACCTCCTCGTCGAATCCCAGCGCACCCTACGAGCTGCCACTGACATCACCGGTGCCGGCCGACTGCTGCCACCGGCCGACTCACCGGATCAACCGGCGGTAGCCGATGAGGACTGCGGCTATGCCGACGAACGCGAGGAAGTGTTCAGCTTTGCGTTCATAGCGTCGGTGGAGCCTTCGGCAGCCGGCCAGCCAGGACACGGTTCTCTCGACCATCCACCGATGCCGGCTCAGCCGCTGCGAGGACTCGACACCCCTGCGAGCGATGCGGTGGCGGATACCGCGCGGTTTGGGTGGTTTATCCGTTTCAGTGAAAGTAGTTCTGAGAGGGCTGTTGATGGGGTAGAACTGCAGGTCAGGAAGA # Right flank : GTTCGGTGAACCTGGCACGGGGATGTTCGGATTCTGGTGTCACTGACGTGTGAGTGTATCGGTGCTGTTCAGGGCTGGTTGGTCAGGTCGATCGTGGTGACATCTCTCGGGATGTCGCGGTGACATGAAGTCGTATCGGCCGGTGTCGTGTTCGCCGTGTCTCCTTCGTTTTGTGATCTTGATGCTTGGGGCCTCGGAGTTGTCCGGGGGCGTGCGGGGCGTTTCGGCTTGGCGGCGCTGGTCACGTTGACCGTCAACGCTCCTAGAACACAGGCAAGTTGCTTGTGTCAAGCGCTCGGATTCGGGTTGGCGCTCGTACACGTGTGTCTGCTATCTGTTGATGCGGAGCGCGCCCGTACCGCGTCGCATCCTCGTGCACCTCGTGCCGGAGCCCTTCCGGAGAGCCCAGACCACGACCCCACCCCGCAGCCCGCTTCCCCGCGGGCCCGGGCAGGGGCCGTTGCTGCACGCAAAGATGCTGCGGAGGGCGGTCCTGCCCG # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGCGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16450-14514 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYF01000005.1 Streptomyces sp. WAC04657 WAC04657_unitig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 16449 28 72.4 32 T.A..T......T.T.....-.C..T... GGTCTCCCGGAGGCAGACGACGGCATCTCCCT 16389 29 100.0 32 ............................. CCCTTCACAAAGAAGCCCCGTCGGGTAATCCG 16328 29 100.0 32 ............................. AGCCTCCGCCGCCTGCGGATCGCCGAGCACTT 16267 29 100.0 32 ............................. TTCACGACGAGTCTGCCCTCCGGCTGGGAGGC 16206 29 96.6 33 ............................T CGGACCGTTACGGCTACGAACGGGAACAGTTAA 16144 29 100.0 32 ............................. AAGGAAGACAACCTGGAGATCCTCTCCGAGTC 16083 29 100.0 32 ............................. ACCACCGGCATCGAACGCCTCGACATCCCGCC 16022 29 100.0 32 ............................. GCCGCGTCCGGCGCTCCTCGGAACCGGGCGTG 15961 29 100.0 32 ............................. CACGTCGTGTTCCCCAGACTGTCGAAGACCGG 15900 29 100.0 32 ............................. TTTCCGCTCTGTGCACACTGCACGCACGCCGT 15839 29 100.0 32 ............................. CACCGTGTCCACGCTCGCCCTGCTCGTCGTCC 15778 29 100.0 32 ............................. CCCAAGCGCGGCCCGGCGCCGGCCGCCGCAGA 15717 29 100.0 32 ............................. GGCACCCCCTTCGAGGAGAGCTACACGCCCTC 15656 29 100.0 20 ............................. AGCGCGGCCGCCCTCGTCGC Deletion [15608] 15607 29 93.1 32 ..............TA............. CGGATGAATCGGGGCTGCAAGGGGCAAACGCG 15546 29 93.1 32 ..........T...T.............. GACGCGTTGCGCGCCTCCAGCCTCCTGAAAAG 15485 29 82.8 32 .....T.......T...A......A...T TCTCCGTGGCCTGCCGCGCGGGCGGCTGCGGC 15424 29 86.2 32 ........T..A.T...A........... GTGTCGGCCGCGAAGTTGTCGGTGGACCTGAG 15363 29 93.1 32 .............T............T.. TCGCCACGACCTTGCTGTCCTTCGAGGACTAT 15302 29 86.2 32 ........T....TT..........G... CCGGCTGGCGGTGGCGCGACGCTGACGTATGG 15241 29 82.8 61 ...T..T...T..T.........A..... GGCGGGATCGTGGGCCGGCCCGTGGTGGGCCTGGTGGGCGAGGCTGGCAAAGAGGTCATCC 15151 29 82.8 32 ........T..A.T..T........G... CGTTGGGAGTCCGCCAGTGACCCCGCCCGACG 15090 29 93.1 153 .............T..............T GCGACTTCCCCGGCGACCAGGCGGCGGTGTGGCTCCACGTGTTTGCGGAGTCGTCGCGTCTTTGGGGGAGTCGTACGGTTTGAGTAGTTTGTCTGTTTCAGTGAAAGTAGTTCTGAGAGGGCTGTTGGTGGGGTAGAACTGCAGGCCAGAAAG 14908 29 93.1 32 ............TG............... ATGCAGGTCGCCGCGTCCGGGGCGCTGGTACT 14847 29 93.1 32 ............TG............... TGGATCGGACCGGCCTCCAGCGCCGTCCGGTA 14786 29 93.1 32 ............TG............... AAGCCGCCCACCCGCATGTGACGGCGCGATCC 14725 29 96.6 32 ..............T.............. GAGACCCTGCTCGTCGTCGTACTCAACCAGAG 14664 29 93.1 32 ............TG............... AGGCCGTCAGGCCCGGCCTGGAGGAGCTGCGT 14603 29 93.1 32 ............TG............... ACCGCCCAGGAGCACCGCCCGTGACCGTCACC 14542 29 93.1 0 ............TG............... | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 30 29 93.9 37 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : TCAGACCGACGGGACCCTCACCTACGACCAGGAAGGCACTCTCCGAGCCGACCTCGCACGCCACACCTCTGACAGCCCCGTCCACAGACAGCAGCAGAAAGACCTGCTTCTCAATACCCTAGCCATCCCAGCCCACTGGTTCACCCGGCAGAAAACACCCCTGCCTACTCCCGAGACATGGCCGGCACACCCTGCGCCCGCCCTCAAATACATGAACGTCGCCCTGTTCGACCCAGCCAATGGCTCCTGCATCAGCGGTCCCCTCGGCCTCACTCTCCACCCGTCCACTGGACTATCCAGATGAGCCCCCACAAGGGGCAGCCGCGAGCGAACGTTCCTGCCGCTATTGTTTCTCACCTCCGGTCCAGCCGGAGATAGGCCAAGAGTTCATAGATTCTGGCCTTCCGCCTCACCACCGTGGGGATCACGTGCCGCCCAATCGGGCGGCACGTACCCACACCTGGACCGTCGGTTTGAGTGCCGTCCATCTTGCCGCACGC # Right flank : GACAGCGCGGGCGCCCTGCGGTGGCGCCTGCCTTTGGGAGGAAGTTCGCCCAGGAGGCGGAGCAGAAGCGGGCGCAGGCCGAGTCCGAGCGGCGGTGCGTGGCCGAGTTGGAGGCCGAGATGGAGCGGGAGCGTCAGGAGCGGGCGGCGGCCGAGGTTGCTGAAGAAGTGGACCGTCTGGCCACCGAGCAGGCCCGCGCGGCGGAGGTTGACGAGGAGACCGTCCGGCTCCGCGCGCAGATGCTTGCGGAGCATCCGTGGATGGCCGAGTACGCCGTGAAGTCTCAGCAAGAGGCCGCAGCGCTGTTCTGAGCGCCGCTCTGCCCCGCCTGGGTCTCTTCCCGGGCGGGAAGGCGTATTCGTTCGGCAGGGCGGCGGGACCTGATCGCGGTCGGCCCCTTCGCCGGGGTGAGCCGATCCCCGCGCAGCAGACCGGCACCTATGGCCCGGCCCGCCGCGAGACCGCACACCAGGACGACGTGCCCATGCCGGCCTCGGCCG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.44, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 26078-24799 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYF01000005.1 Streptomyces sp. WAC04657 WAC04657_unitig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 26077 29 96.6 33 ....................A........ CACAACGCCAACGTGTTCACCAAGTCGGCCGAG 26015 29 93.1 32 ..............C.........T.... ACGCGGTGGTGGGCCAGGTGGACACGGGGCGG 25954 29 89.7 32 .............TC.............T CCTCCGTGGCCTGCCGCGCGGGCGGCTGCGGC 25893 29 82.8 32 ........T....TCA........A.... ATCGAGAACCATTTCGTCGTCGATCCCGCGAA 25832 29 86.2 32 .............TC.A..C......... TCGCCACGACCCTGCTGTCATTCGAGGACTAC 25771 29 86.2 61 ........T....T...A.....A..... GGCGGGATCGTGGACCGGCCCGTGGTGGGCCTGGTGGGCGAGGCCGGCAAAGAGGTTATCC 25681 29 89.7 32 ......T......TC.............. TGCACGTTCGCGATGAAGGTGGTGACGGTGTC 25620 29 89.7 32 .C...........TC.............. ATCGAGGGGAAGTCCATCTTCTCCATGTCGGC 25559 29 100.0 32 ............................. ATGTTCATGCGGTCCGAGCCGGGCATCTGGAT 25498 29 89.7 32 ..........T...C.............T CGCACCTGGCCGACCTCGTACCGGGGCCCCGT 25437 29 93.1 32 .............TC.............. GCGGTGAAGGCCCCGTCGTCGACGGTGGTGAC 25376 29 79.3 32 ...T..........C..A.......GT.T TACCGGACCAACGACCGGAAGGTGCTGGTCAA 25315 29 86.2 32 .......T.....T....A......C... CCGGCTCGACTGCGCCACCTGCACGTCGGCCG 25254 29 89.7 32 ....C..T......C.............. CGCATCGAGCAGGGCCACGCTGCGGGTACCCT 25193 29 100.0 32 ............................. GTCTCCTATTCCCGGGACCTGGCCGTCTCCCT 25132 29 89.7 32 ...T............T........G... GGTCCCGAGGAGCACGACGGAGACCTCGCGGC 25071 29 86.2 32 ............AT...A........T.. TTCTCCATGCTGCTCGGATAGAGGGCCAGTAC 25010 29 93.1 32 ....C.........C.............. GCCAACAATGGTGCTCGGCGGGTCCGTGAAGC CC [25000] 24947 28 82.8 32 ......TTT.....C......-....... GACACGCTCCCCGGCCCCGACGATGCCCGCTC 24887 29 93.1 30 ...........A..C.............. ACGGTGGCCATATGGAACGCGACCACCGCT 24828 29 93.1 0 ..........T...C.............. | T [24801] ========== ====== ====== ====== ============================= ============================================================= ================== 21 29 90.0 33 CTGCTCCCCGCGCCTGCGGGGATGGACCC # Left flank : AGGTTGGATGGACCCGGGACCTGGACCCCGAACTCGTCACCGGCTGGACAGAGGGGTACCAGGGTGCCGAGCGAGTGGGTGATGAGGAGTACTTCCTCTACGGCAAGGCCCAGTCGCCCACCACCCTGCGCCCCGAATACCTTCCGCACACTCTGAAGATCAGTCACACCCCGAACGCCACTGACGTCTACCTCCTCAACCCCTGCGTGCTCACCCCGGACGGAGAGTGGGAAGCCTGGTACCTTGCTCACTGGCTGCCCGGCGCGGTCCGTTACCCGTCCTTCTGGGACTTGATGAACGACGAGTACGAGGACTTCCACGGCGAACGCCGAGCGCAACAGGTTCACCCAGGCACCGACCGCACTGGCGGACGATCTACTGCTTAGACAGTCGCCCGTGACCGGCACGAGTGCCCCGAGAACCGAGCGCACCAGCTCTCTGAACTACGGTTTCAAGTTGGCGGAGGGGCACTGCTCGACACTCGCCGAGTGCCCGGTGGA # Right flank : GGTTTCCCTGGCAGGTGTGAGCTTCGGTCTTCGAGGTGCGAGCTATGTAGGTGGTGGGTTGTCGTGATGTGTGAGCTGTTGGTCAGGAGGATGCTGGCCTGGTGAGGATGAGGCCGCATGAGTAGGCGCGGGCTTTTCCGAGTCCGTTGGTCAGGGTTTGGGTGAAGTTTGCGGGGTGGGTGACGGTGAGGGTGCCGCGGATTTCGGCGCGGCTGATTTTGAGGCCTTTGTGGTGGTCGGATTCGACGGGGGGGAGCATGCGGATCGCGAGAGTGCCGCGGTCTACGTCGGCGCCGATGTGTCCGGTTGTGTTGTTCTGGTGCTGTGTGGGGTCTGTAGGGGGGAGTCGTGCTTCGAACCAGCGGCGGACGTGGTCGGGTCGGACGTGGGGGAGACGTTTGGAAGGTCCTCGGGTGGGAGTGGTGCCGGGGGCGGCTGTGGGGCGGACGGCGCGGACGGGGTTGATGACGGTGCGGAAGGTGTAGCGGTCGCCGGTAGCG # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [21-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 27866-27041 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYF01000005.1 Streptomyces sp. WAC04657 WAC04657_unitig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================== ================== 27865 30 93.3 31 ............CC................ GCCCCGGTCGGTGTGTGAGAGCCCGGCCGGG 27804 30 93.3 31 ............CT................ GTGGCCGGCCGGGACAGGACACGACGAAGCC 27743 30 90.0 31 ............CT...............A GGGCGCGGAAGAGGTTCCCGAGGAGCTCGGC 27682 30 90.0 31 ............CT...............C TGCCGGCCGAGTACGGGCGCGGGCCGGTCGA 27621 30 83.3 31 ........T...CTT..............A ACGTCCACGTCTGCTCGCGGTGCATGAGCCG 27560 30 90.0 31 ............CTT............... TAGGCGAGTGGGCGGCCGTCATCGGGGCTGC 27499 30 80.0 31 ...........CCCT...........T..A ACTCCGTCCGGATCGCCCTCGGCGGTCTGTC 27438 30 90.0 31 ............CC..............T. CGACTTCCCTGGCGACCAGGCGGCGGCGTGG 27377 29 76.7 95 ..........T.CT.....A.-.C.T.... TCCTTGGGGGACCCGTGCGGTTTGAGTGGTTTATCTGTTTCAGTGAAAGTAGTTCTGAGAGGGCTGTTGGTGGGGTAGAACTGCAGGTCAGGAAG 27253 30 100.0 31 .............................. TCGGCAGCATCTTCGTCAGCGTGTTCAAGGC 27192 30 93.3 31 ............................GT ACGACCTGGCGACGGTCGTCTTCGAAGGCAA 27131 30 100.0 31 .............................. TCGCCTCGCGGGAGATCCGGACGGTGATGTC 27070 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================================================================================== ================== 13 30 90.5 36 CTGCTCCCCGCGTGCGCGGGGATGGACCCG # Left flank : GGGTAGAACTGCAGGTCAGAAAGACTGCTCCCCGCGCCCGCGGGGATGGACCCCTGTCCAACTTCGAGATGGGCGCGGAACCGCTCTGCTCCCCGCGCCCGCGGGGATGGCTCCACCAAGGGCCGCAAGGACTGGCAGGGCAAGACCTGCTTTCCGCGCTCGCGGGTATCGCCTCGTTCTGTTGGTGGCGCGGCGGGTTCTGCGCTCCGCGGCCTGCCTGGCCGCTGCCCTCGGCCTGATCGTGGAGACGGCCCGGACTGCCCCGTTCGTTCTGACCTCTACGCCGGCCCGGTCTATGTCCTGCTCGCCCGGCCGCCGTCCCTATGGGGGAGGGCGGTTGTTCCTGACCGGAAGCGGGGGTCGGCTGGAACCTTGCTCTCGTCGGCATGAAGCGATCTGCCGTTTGGTAGGTGACGGAACATGTATGAGGGGGTTTGTCTGTTTCGGTGAAAGTGGTTCCGAGGGAGCTGTTGGTGGGGTAGAACTGCAGGTCAGGAAGA # Right flank : ATTGAGCCTCTGCCAACCTGAATCCACAGGTCAAAGCGCTGGTGTGACAGCCTTCCGGGGTGCTCACATCGGTCGTGGGTGGCAGTCTGCGGCGTAGTTCGTTGGGCGGATCCTGAACGGTCCTGGTCAGGAGAGTGTGTCAGTGCTTGCCGTTAATCTTCCGCCGTGGGAAACACACCAGGTCGGGATGTTGGGTGCCGTTACGCATGGCGGGATCTGCTGCAGCGGTGGAGTGATGAGTGGCTCGATCCCGTGCTGCATGAGCAGGAACGGGCAGAGCCGTTTCCAGATGCCGTGCGCAGGGCCCGATGGCTGGGGACCACTGGAGTCACCAGCGGGGAACTCGGCGCACTCGAGAAGCGCCTGGGTGTCTCTCTGCCGCCGAGCTACCGGCAGTTCCTGCTGACCAGCAACGGCTGGCGCAGCACCACCCCGGACATCCACCGGGTCCTGCCGGCCCACGAGGTTGGATGGACCCGGGACCTGGACCCCGAACTCGT # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGCGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGCGTGCGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //