Array 1 158464-158735 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHY01000001.1 Pseudoalteromonas rubra strain T7 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158464 29 96.6 32 .............G............... CCGTGATGTATCAGTTGTCTTTTACCGTTTCA 158525 29 100.0 32 ............................. CAAAAAAGACGTAGATGCCGTCGTTAAATCAC 158586 29 93.1 32 ..............T.........G.... AACAGGTGCTTTTCGATAACGCAAGCTTCAGT 158647 29 100.0 32 ............................. CAAACTGAGTACGCGTTTTTTAAAGCGGCCAT 158708 28 86.2 0 .................-......C.G.T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 CTTAATCCCCTATACGCGGGGAAGATACG # Left flank : GATCAGATGCTGCTGTAGTTAGGCCATTGATACTTCGCAGAAGTGGCAGGTTTGGCACGACGAACGCCGAGTGCACGTAGTAGCTTTGCTTTAATCGTTTTCATAACTAATTCCTTCTATTATTTGTTGTTGCGAGTTTTAATTCGCTCTTCCAAACTATTAATGAATTGTGAAATTGTCAAGAACGTTTTTTGAACAAATGATGGGGTTTGAGTTAAACGTCTGATAATTTGGGATGAGTTTACAAGGGGAGGTAAATTACACAGCTGGATGAGGGAGCGGCGATGGTTTTTTGATGATGTTGGGGATAAACACAGCGCTTTTTATCAGATCTACCCGCCTCTAAGCGATGACACTCATTATCGTGGTAAATTAAATTCCCACTCTTTTTGTCAGTAGCATGTCAGCAGGATTAATCACTTTTCACTAAAAAATTAGCTTTGATTTCAGGTTGATACAGAGCACTTTGTGCATCAACGTGCTCTGTTCCTGTTTTTAGT # Right flank : TGAAAACCCACCACAGGCAATAAAATTACTTTTCTTAGTGTCAAATATCACCACAAGTTTACTAACCGAGCAAAACACAACCGGATACTAATCTGGGATAGGTATTTGGTCAAGCCAGTGTCGCTGAGCGCTTTTTTTGGCGCTTCCTTTCATCTGATTAGAGTTTAAACTCTAAAGCGACAAATTTGTCATCTCCCGTTTTGTGTGCAAACCGTTACTTTGTTGCTATGGCCGAATTTGTGGGTTTCTCCCTGAAGTCGGCGGGTTTTCCATCCACAAGGAGCCGAGATGACTTACTGCTACCTATTTGAAGCCAGGTCGATCCAGCACTATCTGTTTCGCACTGGTAAATTACGCGATGTGGTCGCCGCCAGCGAGCGGCTCGACCGCCTAATTGATTCCTCTGAACACAGCGTGCTTTATCAGGTGTTACAAGCTACGCAACTGCGCCACGACTTGCTGACTGAACACCCAGACCCCGATCCGCAGGTGCGCTTTTT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCCCCTATACGCGGGGAAGATACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 218841-216102 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHY01000004.1 Pseudoalteromonas rubra strain T7 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================================== ================== 218840 32 100.0 33 ................................ AAACTGGCGGATTTACGCTATTGCTCTCGCGCC 218775 32 100.0 34 ................................ AACAACTCTTTTATTGTAAGGACCACCGAATAAA 218709 32 100.0 33 ................................ AGCACTGTTCGCCGTCCCGATAACGTTAAATCC 218644 32 100.0 34 ................................ AGCCATTAATAGAACGGAGTGAACGAAGTGGCGA 218578 32 100.0 33 ................................ TGGCAGGATGACGTCATCCACCGTAAGCACTCG 218513 32 100.0 33 ................................ TCGTTTTTATCTTGGCCACTCAATTATAACACC 218448 32 100.0 35 ................................ ATGCCAACCAGCGCCCATGTACTCCGGCACTCATT 218381 32 100.0 35 ................................ ATTATGTGAAAGACCATCGCTTTGATAGCCATCTA 218314 32 100.0 34 ................................ TTTCCTATTTAGGAACACCACACGCTCTATACTC 218248 32 100.0 35 ................................ TTTTTTCAAAGTCATAAAGTTCCTACGTCTCAAAA 218181 32 100.0 35 ................................ AAAGTCAAAGATGCGCAAGTGTGGCTGGACGATGT 218114 32 100.0 33 ................................ ATGCCGCGGGTGGGATTGTCGAGCAGGTCTTTG 218049 32 100.0 34 ................................ CCCAATGGGATGGCGGGCCATCAGGACGAATTTT 217983 32 100.0 34 ................................ CCATCAATATACAGTCATCCATACTATTGGCATC 217917 32 100.0 34 ................................ AGTTTGGTTTTAATTTGCTATCTCACATCATGGG 217851 32 100.0 34 ................................ TTCTTTTTGCTCTTCTTCGATTGATTCCACCATG 217785 32 100.0 34 ................................ TCCTTTGTGTATGGTGCATCATTTATTCACTAAG 217719 32 100.0 34 ................................ GGTTCAAACCCAACAGATAATTGGGTTCGGGCAT 217653 32 100.0 34 ................................ AGACATATGCCCGTTGCTGCGGGTGCCTCTGGTT 217587 32 100.0 33 ................................ CAACACGCAGATCCCCTTTACAGTTTCAAAAAC 217522 32 100.0 33 ................................ GTCACAAATTGAGGCAATCGAGGCCTCCATGTT 217457 32 93.8 33 ..........G.....G............... TGAGAGTAAAAATTACCAAGTCTAAATCCAAAT 217392 32 93.8 34 ..........G.....G............... TTCGGTGAAGTCTAACCAGGTTTGTAATTGCTCA 217326 32 93.8 35 ..........G.....G............... ACGTGTTGATATTGTGATGTCTACTGCTGCGTCGT 217259 32 93.8 34 ..........G.....G............... GGAAACCTCAGCAAGGGTGATATTTTCAGGATCT 217193 32 93.8 33 ..........G.....G............... AGTGTATTACCGACCCTGACCCGGACCCAGACC 217128 32 93.8 34 ..........G.....G............... CTCCATACTACCAACATTCGTAGATTTACCAGAA 217062 32 93.8 33 ..........G.....G............... AAATAGAATTTGACCCATCAAAATCAAAAAGTT 216997 32 93.8 34 ..........G.....G............... CAGGATATGGGTTATGCAGCATCTACACACCCTG 216931 32 93.8 33 ..........G.....G............... CAGGCTGGGCTGTCGTCCCTGGGGCTATCCGCG 216866 32 93.8 33 ..........G.....G............... TATGTATACGCACATTGCTGCGCGTAGTGGGTT 216801 32 100.0 35 ................................ GGTAATGCTGTACAGCATCAGCTGGCACATATCGC 216734 32 90.6 34 ............C.C.G............... ATTTTGCCAAATGAGGGCTTGCTGGTGTCTGAGG 216668 32 90.6 34 ...T......A.....G............... CGGCATCGAGACATTGCGCGGATCCGGCAATGAG 216602 32 93.8 101 ..........G.....G............... GCATCAACTGAACTAGCGCGGGGCAATTCATCCATGAAGCATCGCTCCTTCGGTCATCCGTGACCTCACCTCAGCAAGCTGCGAAACGGTGTTTCGGTCTT 216469 32 84.4 34 .CTT..C.........G............... TACAGGCCTAAAGCCATCATCAACAATGCTATTA 216403 32 96.9 101 .......T........................ GCATCAACTGAACTAGCGCGGGGCAATTCATCCATGAAGCATCGCTCCTTCGGTCATCCGTGACCTCACCTCAGCAAGCTGCGAAACGGTGTTTCGGTCTT 216270 32 81.2 33 .CTT..C.....C...G............... AGCTCAGCCACGCTGTTTACGGGCTCAAGCAAC 216205 32 84.4 40 ...........TCT..GG.............. TACATCCGCGCAGAGCCAGAGCCAGGGCCAGAGCACGAGT 216133 32 84.4 0 ..........A.....GT......G..T.... | ========== ====== ====== ====== ================================ ===================================================================================================== ================== 40 32 96.1 37 GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Left flank : GATATACACTATGATGGTATTGGTGACTTATGATGTTTCTTTTGAGAGCGAAGACGGACAAAAACGCTTACGTAACCTTGCCAAGGTCTGCCTGGATCATGGAGTGCGCGTACAGTACTCAGTATTTGAGTGCGAAGTAGACCCGGCGCAGTGGGTGAGCTTTAAGGCTAAACTGTTAAAAATCTATGACCCACAAGTCGACAGTTTGAGGTTCTACAAATTAGGCAAAAACTGGCACAATAAAGTGGAACATCACGGCGCCAAAGCGGCCATTGATATTTTTCGTGATCCACTCATTCTTTGATCCCCAATTTGAATACCTCAGCGCTAACCCCTGGTTCTCATAAAAACCCCGGGAGGTTAGCGCTTATGTATGTTCTTTAAAAATAAGGCTATTTTAAATTACCGCTGGCTTGGCAGTGTGTTTGACTATGATTTTTATCGAGGTTAGCGCAAATCAAGCATTTTTGCTAAGCTGGCTGGGCCTTGGCAACAAGGCC # Right flank : CGCAAGTACATCGCACATTTTGCATAAATCACCATTCGTGTCCTACACGGGCACGGGACCAAACCAACAACCAACGTACGATCCGGTGTAAGAGTTAATACAATAATAGCTATAGATAATTTCTTACAAAGTTGCGCTTTGGCTGGGTTGGCACCGGCTTGCAATGTTTTTTGCGATGCGACATAGTGCGGCTCTAAAAATATGAATAATAACAATATTAAGGATAGTAGGGATGAAAAAGAGCACGTTGGTGTTGGCTGTGTCGGCGGCGTTGGTTATGTTGGGCGGTTGTACTCAGCACGTCAGCTCAAGCGATAAGAGTGCGCATGCCCAGATGCAGCACAGCCTTAAGTCGGGGGTGGAGCTGCAAAACTTTGATATGACGGTCAGGCCACAGGATGACTTTTATCAGCATGTTAATGGTAAATGGTTAAGCACAACGGCCATTCCGGCAGAGCGCTCGTCTTGGGGGAGTTTTGATAAGCTGCGTTACGAGTCGG # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Alternate repeat : GTCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 230666-227485 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHY01000004.1 Pseudoalteromonas rubra strain T7 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 230665 32 100.0 34 ................................ AGGTAAATAGTATGGACGAATGTATATTGTTGGG 230599 32 100.0 34 ................................ AGTGATCTGGGCGACAAAGTGAGCGACCTGGAAA 230533 32 100.0 33 ................................ CATTTTCGCCCTCAAGCACATTGGTTCTGCTGG 230468 32 100.0 33 ................................ ACTCCGTTGAGGCTTTTACCCACTTCAATGAGT 230403 32 100.0 33 ................................ GATTGACTTTAGCTGTGCCTATGGGGCTGACTG 230338 32 100.0 34 ................................ ATAACCTAGTACCCCCAAGACGAGACGCGGCGGC 230272 32 100.0 34 ................................ CTGAGAAAGCCAAAAAAGGATCGTTGACTCCAAA 230206 32 100.0 34 ................................ CCGTGGTACATGCAACCGCGCTCACAATGAAGGC 230140 32 100.0 33 ................................ CTGCTCAAGATGTGGTACCCGCGGAGCAATTCC 230075 32 100.0 34 ................................ AGCTCTTTGGTTTAAGAACTCTAAGTATTCGTTT 230009 32 100.0 33 ................................ TCCCAAAGCACGAAACGTTAAGCAACAAAAGAT 229944 32 100.0 33 ................................ GTATTTTTAACAGAGCCACATCACCAAACTGCA 229879 32 100.0 34 ................................ AATAAATTCGTCATATTGACCAGGGTGAGCGAAT 229813 32 100.0 33 ................................ ACGGCACGCCATGACCCGGCGCGCCTGGCCGCT 229748 32 100.0 34 ................................ ATCAATGCCCGGGACTGCAACCAGGGCACACATA 229682 32 100.0 34 ................................ AGTTGATGCGGGGGGTTTATACCTTTAATGGATC 229616 32 100.0 35 ................................ GTATTTTGTGACAACCCATTTATAGCGCCAAAAAA 229549 32 100.0 34 ................................ TGGATATGTCGAATTTTCGCTACCGCACACCTGC 229483 32 100.0 33 ................................ ATTTGCGTTTTCGTCAGTCAAACAAATTAAGGC 229418 32 100.0 33 ................................ TTACCCATGACAACACCCATCACAGGCAACCCG 229353 32 100.0 33 ................................ AACCTCAACCATTGACAGGTAGAAAATTTTCTA 229288 32 100.0 34 ................................ CACGAAAAGGATGAATGGGGCAAGTGGCACCAGA 229222 32 100.0 33 ................................ GACGTAACGCCCAAAAAAACAACAGCTGGCAGG 229157 32 100.0 34 ................................ TGCCATGATCTCCCCCTGTAAATTGGGTGTGTAT 229091 32 100.0 35 ................................ CTTTACCATTGATAAGAGCTGAATAAGCAATGCAT 229024 32 100.0 34 ................................ GCCAGAGTGCTGAAAGTTTGGCGTTCGCTGATAG 228958 32 100.0 33 ................................ ACACTGCGCCGTGCAATAGTCAAAGCAAAAGAA 228893 32 100.0 34 ................................ AAAATAGCGTTTACACCAGCCAAAGACTTAACCA 228827 32 100.0 33 ................................ TATTTTGAAAGCGCGGGCGAAACCATGGCGAAC 228762 32 100.0 33 ................................ CGCCACTTTGCTTTACAGCACGATGCGGACGAG 228697 32 100.0 33 ................................ GTTGGCAGCACGATGGGTGGGGTGTTTAAATCG 228632 32 100.0 32 ................................ GAGCCATTTAGACCGCACGTTCCCGCTGAGCG 228568 32 100.0 33 ................................ AGTTTTGTTTCTGTCGCGATGTCGATTAACCCT 228503 32 100.0 35 ................................ GGCTGAGTGAGCAGGCCTGGAGCCTGCTGGAGATA 228436 32 100.0 33 ................................ AGTCATGGCGTCAATCTGGTCTTTTAGTTTTTC 228371 32 100.0 34 ................................ AGACTTGCGCTGAGAGGTGTTTTTCTGCGTGTAG 228305 32 100.0 34 ................................ AGAAGGAAAGGAGTGGAGCCGGAAAGATAGAAAG 228239 32 100.0 33 ................................ GCCCTGGTCAAGTACCACCTGGCCTTTCATGGC 228174 32 100.0 34 ................................ CAATCCAAGAACCAGCCCAACCACCTTTAAGACC 228108 32 100.0 34 ................................ TTGCTGCAACGAAAGTAGCAATGACGCAGCTGTA 228042 32 100.0 34 ................................ AATTCCTGTGTCGGTTGCTGCTATTGTTGCTATG 227976 32 100.0 33 ................................ TTCCAGAAGTTGTCGATCACATAAATGGGAACG 227911 32 100.0 33 ................................ TACGACGGCGGTGCAACAGTATTTAATCAGCAG 227846 32 100.0 34 ................................ ACATTTTCAGCAGTATTAATAGCTTTTGGTGTCG 227780 32 100.0 34 ................................ ACCGTATAATTCGTTGTATCGTTCGATAGTTTTG 227714 32 100.0 35 ................................ TCTCAATCCATGATTGAGGCTGAGGGTATTCACAC 227647 32 100.0 34 ................................ AGCGGGGCCGTTACCTCGTCATGTCGTCATGATA 227581 32 90.6 33 ..........G.G..........A........ AGCACTTTGTGTTATGACGGGCAAAATTACTCT 227516 32 84.4 0 ......CT.....T...T....A......... | ========== ====== ====== ====== ================================ =================================== ================== 49 32 99.5 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : CTGATCATTCTCAGCATTTTTGTCTGGGGCGAAATCCGCTTTTTTAACGCTATCACCGCCAACCCCAACAACACACTGACTGGCGAACAAATGCAGGCCAAGCTCGAACTGCTCGCCACCCAGCGAGCTACCTTCCGCGCCTTTTGGTTCGACACCCTCCAGCTGATCATACTCAACGTGCTGTTCCCAACCTTGACCGCGCTGCTAGGGTACGTATTTGGCACCAGCAGGAATAATGGGGCGTAAAAGGCGTCTCAGTTCCTTGGTTAATATATTTACCAATGTCTATATTTAATCGCTAAAAACCTGAAAAAGTGGTAGGTAGCGCTAACCCTTAGTTCTCATGAAAACCCTGGGAGGTTAGCGCTCTTATATGTTCTTTAAAAATAAGGATATTTTTACAGCTGCTTAGATTAGTGATGGTTTTGCATGCCATTTTCACAGAGGTTAGCGCAAAACCCCTAATTTTGTTAAGCTGGCTGCGTCTTAGCTATAAGGCT # Right flank : TTTTAGGAACCTTGGGCCTGTCGTTCAAGGTAATCGAGATTGCGATTTGGGCGGATCTGGACGCAGCAACTGTTCAGCCAATGACCACACAGTGCCAAGCGTTATTAAGAGCAGGCCAGCAATAAAGATAGCCAAACTTATTAGTAGAGTAAAAATAGCCGCCAGAATCGGCGCACCTAACATAGCACTGAGCCACCCATGTTGTGTTGCCAAGTAAACCCAACAGCTTAACAAACACCAAGGGAACAAAGTACCAGGCTTCAATAAGCTTGTGACCCAGTTATCCTGCTTGTTTAGAAGTTTTTCAGGTGTTGCCGTCATTGTTTTAGATCACATTTTAATTTAAAAATTTATTCATTTAATTTACATTCTTGGGCGAATAGGCAAAATAAACAATAAATTAAGCGCTAAAAAGGAGTTTTATGCCATTCATTGCCCACCCTGCTGCAACAGGAAACGAACATCAAAGTGTCCTTACTCATTTGCGCGCAGTCAAAGAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 312856-313547 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHY01000004.1 Pseudoalteromonas rubra strain T7 4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 312856 32 68.8 33 .CGG.GT.........ACG........G..G. GCAAACGCTAAGCCTTTTTTATTTATAAGCCAG A [312858] 312922 32 90.6 34 ................ACG............. TAGAGGTTGCATGATGGCAACCTATAACGCTGAC 312988 32 90.6 35 ................ACG............. TGAAGAAGTGCTGATCAAGTTACAAACCCCTGACA 313055 32 100.0 33 ................................ CTTTCGGCATTAAAAAGCTCTACAACCACTGAT 313120 32 100.0 34 ................................ AATGTTCATTCAGAATCTTAGAGGTAAATTTGGT 313186 32 100.0 34 ................................ ACAGAGGGTTACAGAGCTTAAGGCTCAAAGGTCA 313252 32 100.0 34 ................................ GTTGCAACTTGCTCTGGCAGTTCTGCGTCTTCAT 313318 32 100.0 35 ................................ GGCATACGCCCAAAGCGAGATCGCCACGATAGACA 313385 32 100.0 33 ................................ GTGCCACGCGCGGACTATGACGCATTAGCAACT 313450 32 90.6 34 ................ACG............. TGGGCGATATACGGGCCGAACCCATCCAGGATCT 313516 32 90.6 0 ................ACG............. | ========== ====== ====== ====== ================================ =================================== ================== 11 32 93.7 34 GTCTCAATCCCCTCTCGTACGGGGAGCACAAC # Left flank : TCTCAATCCCCTCTCATGCGGGGAGCGCAACAAATTATTTCAACAATGTGCTTTGGATTCATCCATGAAGCGCTAAGTAGCGCGTTCGCCAGAATCGGCATCCATTGCCTGTTTTACTGATTTGCTGTCCATGCAAATCACCAAAACCGGCTTTCGGCTTCCCGCCTACAGTGTTCAAAGTCATTTAAGCGTTGCTTAAACAGCATGACTTTTCACCGTTCACGCCTGAAAAAGCGGCGCTTTTTCCGAGCGGCGTTCACCCACTCACGCGGGGAGCACGGCTACTTATTTCAACAATGTGCTTTGGATTCATCCATGAAGCGCCAAGTAGCGCGTTCGCCAGAATCGGCATCCATTGCCTGTTTTACTGATTTGCTGTCCATGCAAATCACCAAAACCGGCTTTCGGCTTCCTGCCTACAGTGTTCAAAGTCATTTAAGCGTTGCTTAAACAGCATTACTTTTCACCGTTCACGCCTGAAAAAGCGGTGCTTTTTCCGA # Right flank : CGGCCGACTTTAAATCCCGCATTATGCAAGGCCAAAAACCAACTTTTGCGCTAACCTAGGTCAAAATTGCCCAACGCAACTGAATTTTGTGCAACAAGATTACACAATACCATAATAAACATCAACATACAGAAGCGCTAACCTCCCGGGGTTTTTATGAGCACCAAGGGTTAGCGCAAATAACATGATTGACTGGGAAAATTGGCCTCAGGCATACAATGACAAAGCATAGTACAGCAGGGGCTGACCTCTAAAGTCAAACGCCCACTCCGTCGTCTTACCGACAATCACGATTCTCAATAAGCAGATTATATATCTGTGCCAGAGTTCTACCCAGCTTCAATGTTCATAATACGGAAAAAACAATCGTACCCGCGCGCCCTGCCCGTCAGGGTTATTGTCGAGTTTAATGCTGCCGCCGTGTGCGAACATGATCTGCCGGCACAGGGCAAGGCCAATGCCGCTGCCTTGTGCTTTGGTGGTGTAAAAGGGCACAAACA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCCCCTCTCGTACGGGGAGCACAAC # Alternate repeat : GTCTCAATCCCCTCTCACGCGGGGAGCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 80388-80619 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHY01000006.1 Pseudoalteromonas rubra strain T7 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 80388 25 100.0 44 ......................... TGATCAGCAATGATTCTGTTACTCCAATGTTCTAGTACCGGAAG 80457 25 100.0 44 ......................... TCTTCGGTTACGCAAAAATGATGGGATACAAATCGTACCGGTGA 80526 25 100.0 44 ......................... AATAAACAGCCCGCAAGGGCGATGATTTTTGAGGGTACCGGAAG 80595 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================ ================== 4 25 100.0 44 CCCCGACTTTAGAGGGGATTGAGAC # Left flank : CTTTACGATTGGGTGTCTATGCTTTTCCCTTTTGCTGGTTTTACGATTGGGTGTCCATGTAGTGGTTTTAGCAGTAGCTAGCCAGAATGTAGCTTTTTGCTGATATTCCTTACTTCATTTTTCAAAAAATGTTCCGTCGATTAGTCAAAGCAAAGGCTTAGTGCAAAAGCTTCGCTAGTTTTACGATTGGGTGTCTGCGCTTTTGGTAATCGCCTGCAATTAAGCGCAATACGGCGTTACTTAAGCAGTAGCTAGCCGGAATGTAGCTTTTTGCTGATATTCCTTACTTCATTTTTTGAAAAATGTTCAACCCGATTAGGCAAAAGCTCGGCGCCAGAGCTTTGCTGGTTTTACGATTGGGTGTCCATGCTTTTCCCTAGTTTAAGAAGGGTTAAAATGTCAGTAAGTCAGCAATTTTGGGAACAGCCGACAGGACATCGACATTTTTACCCCCTACAGCCCTTGTACGACGCGGCCTCGATCCGCTATAGTACCGGTGA # Right flank : CAAACCCCTCATTCTCGGCTATTGCAGAAACACTGAGTACCGGAAGCCCCGACTTTAGAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTATTCAGGCTCGATGAGTGAAAATTATGCGTTTTAAAAGCACCGCTTTTTGCATGATTTGAACACTGGAGGCAGGACGCCGTAAGCCAGTTTTGGTATTTTGCAGGGAAAGCAAAATAGTAAAACAGGCCCTGGACGGCCGATTCTGGCGAACGCACCGCTTAGCGCTTCATGGATGAATCTACGATGCCGTTGTCGAACTGTTTGGTGAAATGACCCCGACTTTAGAGGGGATTGAGACGTGTTCAATACTACTGGTATGTACAATTTTTTGGTACCGGAAGCCCCGACTTTAGAGGGGATTGAGACAGATAGTAGGCGTAGAATTCATTATTTACGATTCTGTACCGGAAGCCCCGACTTTAGAGGGGATTGAGACGCGATGAGAATCGGCTCATATATCATGGTAAGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 80923-81153 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHY01000006.1 Pseudoalteromonas rubra strain T7 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 80923 25 100.0 43 ......................... GTGTTCAATACTACTGGTATGTACAATTTTTTGGTACCGGAAG 80991 25 100.0 45 ......................... AGATAGTAGGCGTAGAATTCATTATTTACGATTCTGTACCGGAAG 81061 25 100.0 43 ......................... GCGATGAGAATCGGCTCATATATCATGGTAAGCGTACCGGTGA 81129 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================= ================== 4 25 100.0 44 CCCCGACTTTAGAGGGGATTGAGAC # Left flank : TGATTCTGTTACTCCAATGTTCTAGTACCGGAAGCCCCGACTTTAGAGGGGATTGAGACTCTTCGGTTACGCAAAAATGATGGGATACAAATCGTACCGGTGACCCCGACTTTAGAGGGGATTGAGACAATAAACAGCCCGCAAGGGCGATGATTTTTGAGGGTACCGGAAGCCCCGACTTTAGAGGGGATTGAGACAAACCCCTCATTCTCGGCTATTGCAGAAACACTGAGTACCGGAAGCCCCGACTTTAGAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTATTCAGGCTCGATGAGTGAAAATTATGCGTTTTAAAAGCACCGCTTTTTGCATGATTTGAACACTGGAGGCAGGACGCCGTAAGCCAGTTTTGGTATTTTGCAGGGAAAGCAAAATAGTAAAACAGGCCCTGGACGGCCGATTCTGGCGAACGCACCGCTTAGCGCTTCATGGATGAATCTACGATGCCGTTGTCGAACTGTTTGGTGAAATGA # Right flank : CTAGTTTTTTATCAAACATATTAACCTCGTATTATCGTTGTAGTGGCATAGTGAATCCAACCACCTGCATAGCGGTGTTAATATACACCTCAGAATCAGCCGACTCAGACGAACGCAGTGAGCACCACTTACCAAACAAACCAACATTGCACCGATAAACTCCACCACGTAAAAACTAAGGAATAACATGCACGTAAGACCCGCAGAACAAAAGGATTTAGATACCCTCAGTCAGATTTGTTTAGAATCATTTGATAGTGCCCTGGCCGATACTTTACCAGCGGCAGGTCGGGATACCTTTAAGGCAATCGCCGCTCCTGCTGCGATTGCGGCGCGGCTGACGGAGGATAATCAAGTTTTGGTGGCTGAAATTGCCGGCAAGCCTGTTGGTATGCTTGAGCTAAAGGCGGGCCGTCATATTGCCATGTTGTTTGTTACTCCTGCTCAGCAACATCAGGGGGTTGGCAAAGCGCTGATTAATGCCGCATTTGAGCTGGCCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //