Array 1 541103-540892 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072624.1 Leptospira borgpetersenii strain FMAS_PN2 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 541102 29 100.0 32 ............................. AACTTATTCGTCGAATCCGGTGGACTCCGTAC 541041 29 100.0 32 ............................. TTGGGGATTTCTTTTTCATCACCGAAGCGTTC 540980 29 100.0 32 ............................. AGTAGAATCAAAAACCATCCTTTCATCGTTTA 540919 28 72.4 0 ...............A.AACC..-.C..A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TAAGGTTTGGTTCGGGGAATTGGAAATCTGGGGAAAATCAACCCGACGGATCTGGAAAGAAAACATCCAAGTTATGATCGAAGTCCTTGGACATGTTTCAATACATCCATCAAGGAAAACATAGATCTAAGGAACCTGATTCAGAAATGGAGATTGTCCCCCATAAGTTTAAAATTTATAGATCGAAGGATAAATCTATTCCGTTTTTTTAGGACATTCAATTCATCTAATTCCGATATACATAATATTATGTTAAACAATTTCTCTCTTTCTGAACAAGATCGTTCCCAATCCTTTCAAAATATTCGGTCCTCTTTCTTTGGTTCCGAAATTCGTTTTCACGACGATCTGTTTCGCGAGATACTAGATTTTGAAGGTTCCTTCGATTTTTCTCTTACAAACCGAATCGTTTTTGTGAACAAAAATACAAAACCAGATCATATCTTTAAAAATAACTCTAAGCTGACATAATATGTAAAATTACTATATAAATTTTTAGC # Right flank : CAAGTTGAAGAGGACTTTAGAATCAGAAGGATCCAAACGCACATTTTTGAAGTGTTCCGACAAGAATGAGGTTTTTTACTTGCAAAAAGTATGATTTTCCGATAGTGCGAAGTCCTCCAAGCCTTTCCTCCTCCCAAAATTAGGGAAAACTCATGCAACGCTCTCTATAAATCACTTGCAGGTGTAAGTTTTACGGTGGATTTGTCGGAATTCCGACAGATTTATATTAGAGTTGTTGAAAAATTAATTCTCTGTCCGTTTCTGCTTCGTTGAAATGGATGTTTGAAGCGGTTTTGTTAATCCGAATCATGGAATTTTTCAACAACTCTATTGAGATCCAAATACTTGTGGGTAAGGTTATGCAAAATCGGCGTGGGGTTGAACCGAAGTTACAGAGAATAAAACCATTTTCGTTCAATTGAGAATTTTTACAACGTAGAATCAATGAATGCAACTTTAAGTTTTTAATATTCCTGTTTTGGAAAAATTTCATTTTTTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2615303-2615697 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072624.1 Leptospira borgpetersenii strain FMAS_PN2 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2615303 29 100.0 32 ............................. AGACCGAAGGCACAAAAAGAACCAATAACTTC 2615364 29 100.0 32 ............................. TCCGTATTTTGTTGGATTATCTGTGATGAAAG 2615425 29 100.0 32 ............................. TCCGTATTTTGTTGGATTATCTGTGATGAAAG 2615486 29 100.0 32 ............................. TCGTCTGAATGTATCTTTACGAGCATCTCTGC 2615547 29 100.0 32 ............................. CAATGTGATTAAAGAATGTAGGTCCTAAAGCA 2615608 29 100.0 32 ............................. AGATTTGGCGTGAGTCGAGTCTTTACGGACGC 2615669 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATCCCGAATAATTGCGACCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATTTTTTATATTTCAAAACGACAGTTCCCTTGGAGTACAACTCTGGTGAAATATTTTAGACAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCACCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAAGTAAGCGTACCTTAGATGTTAACACAGTGGCAATTTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGAGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : GGTTTCAGAGGCAAGGATCTTTCCATAACGTTACCCACAAATTAAGAAGGCTTTTGGGATCATAAGGATCAAAAACTGATATTTTTCAAGTGTTCCGACAAGAATGAGGCTTTTTACTTGCAAGAAGTATGATTTTGTGGTAAAGAAAACCTCCCGAGTCTTCCCACCGCCTCTCCCCTCCACCCAAAATCAGGGTGGGGCGTAAGTTTCACAGAGGATTTGTAGTAATTCCGACAGATTTATCTTCAGATCCAAGTATTTGTGGGTAAGGTTATGGGATCTTTCGGGTAACTCACTTTTCCCCACATGCGTGGGGTGAATGTACGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCGGCGATTGATCAGACTGGCATTCGCGTGTTGTTGGTATACCGCAAATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACACTTCCTATGAAGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2950474-2950944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072624.1 Leptospira borgpetersenii strain FMAS_PN2 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 2950474 29 100.0 32 ............................. GAGACATTTGGATGATCCTGGAAAGTGACTTA 2950535 29 100.0 33 ............................. CCTATCCTGTACGGCCTTTATAGTGATGCCATA 2950597 29 100.0 32 ............................. TCAGTCGCAGAAACGAGAACGCATTCGTCCTG 2950658 29 100.0 32 ............................. CATTTGGTTCTTTGAACAAAAATCTTCGAACA 2950719 29 100.0 32 ............................. ACGCTCGATGCTTTCGAACTCGGATAGATTAA 2950780 29 100.0 33 ............................. TTTTGTGCGAGATGGGAACCGGCGAGTGTTGCG 2950842 29 96.6 45 ..T.......................... TTATCGTTATACGAAATTCCACTCACTTCAAGATCACCTGATTTC 2950916 29 93.1 0 ..T.........................C | ========== ====== ====== ====== ============================= ============================================= ================== 8 29 98.7 34 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCCGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGTGATCAGATAGAAGTCATGAATGATTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAAACCGCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGGATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : CGAAAAAATAAAGGAACAGAACAAACGTAGGGCGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACACCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATACACAAAAAAGAGAGCCCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGGCTTTTATTCATCGGTAAACTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //