Array 1 286-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG700784.1 Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 strain DSM 20075 SCAFFOLD33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285 29 96.6 32 ............................C GGCCGTGCCGGTATTTTAACCTGCTTGACAAG 224 29 100.0 32 ............................. ATCACCAACTGGCCAGTTGATAACGGCGCTCC 163 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 89.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTTCTCTCTTTTTTAGTACCTATTATTGATTTTTGTTGTCACCATTATCATCAAAATCAAAGCTTTGTTCAGATTCAGAATTATCATCTGTATTATTATCAGCATTTAACTCATCAGCAATTTCAGCTGTATCGAGCAGTGAATTTAACGAGGTAGGTTTGCTATCTGAACATGGCTCCAACTCATTGTTTGGACTAATCAAGTTAGAGATTTTTTCTGGCAATAGATCAACTTTAGCATCAATTTGTTTTATCAAATCAATAAGCTGGTCATGATTATCAACTTGCAGACGCAGGTCTTGTACTTCTTTAGTAAGCGAAGTAATCAATTGCTTATCTGACTGTTTCTTAGCCTTCTCCAACTTAAAACGCTCAACAATTGCACGTTTA # Right flank : AAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACA # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82638-79836 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG700755.1 Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 strain DSM 20075 SCAFFOLD4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 82637 30 100.0 36 .............................. TCAACACCGCCATGTTTCATACATTTATGAACAAAA 82571 30 100.0 35 .............................. TCGTGTAGCTTAATCCAAGATCAGCTTTGCCAGCT 82506 30 100.0 36 .............................. GAAGTGATTCCAACCAGAACCAATCTGTTTGAACAT 82440 30 100.0 36 .............................. ATTAATAGAAGAATGATACTTCTTTACCAAATCCTT 82374 30 100.0 37 .............................. ATATTGGCGGTCTTTTTAAGGCAAAAAATTAATTTGA 82307 30 100.0 35 .............................. ACAGTTATGGTGGCTATTATGTCTATTGTGTCTAT 82242 30 100.0 37 .............................. TAGCTATGGTATAGTATATATAGTTAAAAAAGAAGAA 82175 30 100.0 36 .............................. TGACGTAGGAACTAGGTATGTTAGCTGTAAAAGCAA 82109 30 100.0 35 .............................. ATCTACAATAGTAGCTGGGATAACAAGACGTATAG 82044 30 100.0 37 .............................. AATGTATACCAGTCTATTGGTGGCATTGCTCGTACAG 81977 30 100.0 35 .............................. TTAATTGCAAGATTTACTCTTGTGCGACTTTCACC 81912 30 100.0 36 .............................. AAATATTGGTGTTCCAATTCTGGGACTGGCTTAATT 81846 30 100.0 35 .............................. GGCTAAAAGCTCGAAAGAAGTCGAAGGACTAACCA 81781 30 100.0 39 .............................. TTGCATAAAATGCGTCTCTTAATCTTGTCTTTGATTCAG 81712 30 100.0 36 .............................. TATTTTTGTATGGAAAAAGTAAGCGATTTAAATAGC 81646 30 100.0 36 .............................. GCATAAATAGTAAATTCTTTCATTTTTTGTACCTCG 81580 30 100.0 35 .............................. TCAACAAGCTTGATGGAGTTTAAATCCCGACCACC 81515 30 100.0 36 .............................. AAGCAAAATTGCAAAGTATGGTTACCAAAATCTTTA 81449 30 100.0 36 .............................. ACAACTAACGCTGCAAACAACGCACTAAGAAAACAA 81383 30 100.0 36 .............................. GTGCAAAATAAAAATATGCCTAAACGTTATATCAAA 81317 30 100.0 36 .............................. CTATCAAAGGCTTTACTCATGTTGGCTCTGGTCTGC 81251 30 100.0 37 .............................. CCAATCAAATCATCATTAAGGAAATCTGCTGCAAACG 81184 30 100.0 35 .............................. ATTTAGGACTGTCGTTGATCATCATCGTTAGTCTG 81119 30 100.0 35 .............................. CATTAATAGCCGTTGTCGTCTTACTTCTAAAGTGT 81054 30 100.0 36 .............................. TTCTCTGGCTCGGTAGGCTGTGTTTGTGCCGTAGTT 80988 30 100.0 36 .............................. TGCTATAAAAAGCATCTCTTAATCGTGTTTTTGATT 80922 30 100.0 36 .............................. TGTAAGTGCTTGGTATTAATACCAGCAATGACGTAA 80856 29 96.7 37 ......................-....... TCATGGCTTAAAATCCTAATAGTACGAGTATTGTTAA 80790 30 100.0 36 .............................. CTATTCCGACTTGACCCAGATGAACTCACTAACCAC 80724 30 100.0 36 .............................. CAAAAATGGAACGGGTGGGAACGGTTTAATGAAATT 80658 30 100.0 36 .............................. TGAAATACTCTGAATCATGTTTAGCTTGATCGCCTG 80592 30 100.0 37 .............................. AGTGATTTAAGCTTGACTCAAGGTGATGATAAGGACG 80525 30 100.0 36 .............................. GTATTCCTGTGGTACTGATTTGGTAGTTCAGCCTAT 80459 30 100.0 36 .............................. GATTATGCGTACGGCAATAACTCATGGCTACAAGTC 80393 30 100.0 36 .............................. TATGGCGAAAAATTAGAAGAAAATTTTGTCAAAATT 80327 30 100.0 35 .............................. TCTATCTATATCCTTTCTTTTGGTCGTTGGACTTT 80262 30 100.0 36 .............................. AGATTTGTGGGCGCTTTAATATTGAAAATGCAGAAG 80196 30 100.0 36 .............................. AATTCACGATTATATACTTCATCAGGTGCAAGACTA 80130 30 100.0 35 .............................. TTTCAAAAAAAGTAGAAAACTACAAAGAGCTTGCT 80065 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 79999 30 90.0 38 ............T.............G..T TTCTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 79931 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 79865 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ======================================= ================== 43 30 98.8 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //