Array 1 1152380-1153490 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048039.1 Alcaligenes faecalis strain MUB14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1152380 28 100.0 32 ............................ AGGCGATTCTTTCGTACAGATGCTTTGATGCA 1152440 28 100.0 32 ............................ AATGGCACCTTTGCGTGGATTGGGGTGACTGG 1152500 28 100.0 32 ............................ AGTTGGAGGCTATGCTCACCCGAGCAGCGCAT 1152560 28 100.0 33 ............................ CGAGCAGCCAGAACTGTTTGAGAATCCAGACAA 1152621 28 100.0 32 ............................ GTCATGCCCCAGTCGTTGATGTAGGCGACCGG 1152681 28 100.0 32 ............................ TCCCAGTCCCCGTGACGGTTCTTATCGCAGAT 1152741 28 100.0 32 ............................ TTTGGGGCATAGCGGCCTCCGTTATGAGTACA 1152801 28 100.0 32 ............................ CTCGCATCGGCGCGGAACCTAAAGCGTCCTCA 1152861 28 100.0 32 ............................ TTGCTGGCCGTTTTAGCGGCATGATCCTACGT 1152921 28 96.4 32 .....T...................... AGCACGGTGACGATGCCGAGAATGAAAGCAGC 1152981 28 100.0 32 ............................ ATCTTCATCCCCCTGTAGCTCAGCAGGTTAGA 1153041 28 100.0 32 ............................ AACTCAGCCGCGATCGGTGCAGCATTCTTGCT 1153101 28 100.0 32 ............................ TGCAAGATAGGCCAAGTCCATAGCATCGCGTA 1153161 28 100.0 32 ............................ AGCTTGGCGCGCCGGGCACAAGAAGGCGGTTG 1153221 28 100.0 32 ............................ AGCGATATTACGGCGCCGGCCGAGCGGCCGTA 1153281 28 100.0 32 ............................ TTAATGATGGTGAATGCACAGGCTGATGTGCG 1153341 28 100.0 32 ............................ TGCACGTGGATGTGCAGCACCACACCATTCGA A,C [1153362,1153368] 1153403 28 96.4 32 ...........A................ AGTGGGCCAAGAAAGCCAGTGCCGCCATTGAC 1153463 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.6 32 GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACACTTAAATCAGGATCACGCAGGGCGGCTTGTACATCGCTATGTCTATGAACCAGCCAAGCCCCACCGCAGAAATCCGCATCCCACACCAAAGGCGGCCCCTGCCGAAGGCGGGCATAAGCCGCATAGGGAGACGCAAGATTGAAATCGTCAAACATGACACCGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCATTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCTGGGGTTTTTGAGGGAATTAAAAGGTTGTTTGCAGTTTATGGGGGAAGTTGCTTGATCTTGTGTGACTATTTTTTACAATAAATTTGATTGGTGAGTTCGAGATGACTGCTTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAATTCAGATGCTTATAAACTGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAATCTGCTTGGCATTCAGGGATAAACGCTCTA # Right flank : AGTCGAAGTCTTGTACGGAATTCCCTTCTCTTCGTTTGCAGCCTAAGCAACTTGGAAAGGCTTATGGGTTTCTATCGTGTGCATGCAAAGCTTGCTGCTATATGGGTCGACGAAGTTTTTTTATTTCATATACCTAGCCAGTTTTTTATAAATGGCTATCGCAGATCTGGTTGCTAGCCCGTTGCTGATAGCGGCCCTGTCGCAAATGCAGGCTAGGACTACAGCCCTAGCCTGCATTTATTCCAACTAATCACCGAGCATCAGAAGCTGCTGGAAGTCCTTCATTACCCAGCTTTTCCGTTTTGCGCTGCGGCAACTTCCCATTCAAAATGAAGTACGCCAACAGGCCGATCACCAGTCCCCAGAAAGCCCCGCCAATCCCGAACAGTGTGATATTGGCCGCTGAAGCCAAAAAGGTAATCAAGGCTGCTTCCCGTGACTTGATTTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGCGCCAAGCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1172081-1173848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048039.1 Alcaligenes faecalis strain MUB14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1172081 28 100.0 32 ............................ TAGCCCTGCTTGGTAAAGAGACCGAGTACGAA 1172141 28 100.0 32 ............................ GGGATGGCTGAGGCTGCAAAGAAGCTTGAAAA 1172201 28 100.0 32 ............................ TATCAAAGCAGGTTGATTGGATGGTCAACGGA 1172261 28 100.0 32 ............................ ATGAGGAGGGTGCGGGTTCCAGCCAGAGAAAT 1172321 28 100.0 32 ............................ CCCGCGTTCCACCGTGGGAACCACTACTGAAA 1172381 28 100.0 32 ............................ ATGTCGGGCTTGTTGTAGAGGCGGACGGCAGA 1172441 28 100.0 32 ............................ GTTCCGGAGCTGGACTGCTGGGGGCTTGTCAG 1172501 28 100.0 32 ............................ AGCCGAAGCAATTAATTTTATTTTTGATATTC 1172561 28 96.4 32 C........................... AATTACACGAATATTTCTATGCAATCCGAAAA 1172621 28 100.0 32 ............................ AAGGTAGACCGTGCTGGAACGCATTTCGCCTT 1172681 28 100.0 32 ............................ AGTCCGGCTACGGTGCACCTGGGCTTCACTGT 1172741 28 100.0 32 ............................ AGACTGAGTTTGATGCATTCAAGAGACAAGAG 1172801 28 100.0 32 ............................ GTTCTCGATGGTGCGGCTCAGCCACGCACGGA 1172861 28 100.0 32 ............................ CGTGCGCAGCTTTGCGTAACTTGTGTTGCCGA 1172921 28 100.0 32 ............................ TCCATCTGGCCCCAAAGCCGAGCCGTCTCGCC 1172981 28 100.0 32 ............................ CTCGCTGCTGAGTCTTACTCAACTTAGCGAAG 1173041 28 100.0 32 ............................ ACAGTTCCCTGAACAGCAGTATGAAATGACGG 1173101 28 100.0 32 ............................ AAGACAAGGGTTGTCACTACCGATATCGTGGA 1173161 28 100.0 32 ............................ TTTGAAAAGTCATGGGATATGTACAGCTTATT 1173221 28 100.0 32 ............................ TTCCCACGTTATTTCATAACCCGCTTGCTTAG 1173281 28 100.0 32 ............................ AGTACGTTAGGGGCTGGCCTGCGCTTTACGGT 1173341 28 100.0 32 ............................ TATTTGGGGTTAGCGTGGACGGTTTGGTGGGC 1173401 28 100.0 32 ............................ TGCTCCCCAGCAGCAACAACAGCAACAGGCTC 1173461 28 100.0 32 ............................ AGTCTGAGCATTGGGAGCCTGGGCAGGTTGTG 1173521 28 100.0 32 ............................ AGCGGTTCTTGCAGGAGTTCCGGCAGGCCCGC 1173581 28 100.0 32 ............................ TTGAGCGTTATCGTGCAGGACTACCCCCATCA 1173641 28 100.0 32 ............................ TCTGGCGCATTCGCAATGGCATGGGCCGCGTT 1173701 28 100.0 32 ............................ CATTGCGCGGTAATCACATCACCAGTGACAGG 1173761 28 100.0 32 ............................ TTCGATTCAAAGCGGGAAGCGACCCGATACAG 1173821 28 92.9 0 ...........C.............C.. | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.6 32 GTTTGCTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAGAGTTGCAGGGGCTGGAGCAAACGCAGTGGTTACGTGGTATGCGTGATCATATAGAGCTCAAGGAAGTGTGCCCTGTGCCGGAAGGAGTGAAATACCGAACCGTTTATCGTCGTCAATTTAAAACGAATGTTGATCGTTTGCGACGTAGGCGCATGAAGCGGCATGGTGAAACAGCGGAGCAAGCTGCCGCAGCGATTCCAGATTGTGTTCAACAACAGCCAGACTTGCCTTTTATACAGTTGCGTAGCCAAAGCACTGCACAAGCATTTTGCCTTTTCCTGGAAATGGGGCCGGAACAGGGGGGACCTGTGGCTGGGAGGTTTAATGCTTATGGGCTAAGTGCAGAGGCGAGCGTCCCATGGTTTTGACCCTAATTTTTGGTGAATTTAATTATCTTTAAGAATCAATGGCTTGGGGTTTTGTCTAAAAAAAGGGTTTTGGAGGTGGGAAAGCAGGAAAGCGCTGAAGATTCAGCGCTTTCAGCGTTTTGACTCTA # Right flank : ATGTTTCACGGCGCGAAGCATCTGCGCGTGATATTTGCCTTTTTCCGAAAGCCGATAATAGAATTCATTCTCATTTGAAGCGCCTGCTTCGACCCCTCCACCCCTACTTCCAGCCCATCGCTATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAAGGAAGGCCTGAAAAAGAACCTCTTGCCCTGTCCGCTTGATTGCGTTGGATGGGTAAGCAAGCCTCTGCCTTCTTGACCACTATTACTTTTTTGATCACCTGCCAGGCATGATGCGGCGGGTGCAGATCTACGGTTTTAACGGAATTATTTATGAAGTCCAAAGCAGTGAAGCGCCGCTGGGCGTTGGCCCTGGTGGCGGTGCTGGTACTGGGGGCGCTGGCCGCACAGGCCGGGCGTTCTTCAGAGCAGTTTGAAACGGTGGCCGTGGAACAAAGCGATATACGCGCTACCGTTGCTGCGGTGGGGACTTTGAAGCCCAGTCGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //