Array 1 5039-5793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRY01000102.1 Lamprobacter modestohalophilus strain DSM 25653 scaffold0102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 5039 37 100.0 34 ..................................... TGCTATGAGGTTGGCATAACGGGTGGCTCCTGCG 5110 37 100.0 34 ..................................... CCGTCGTAGGAACCGCGTTCCGCGCTCCGAGTAA 5181 37 100.0 35 ..................................... CACGATTGGAATGCCTGCCCCGCATGATCAACCGC 5253 37 100.0 36 ..................................... TGGCAATTCGAGCGCGCCGGCGGTGTCGCTGGCGTG 5326 37 100.0 34 ..................................... ACCAGCCTCGGGCTCAAAGCCGATCGCAACCCGA 5397 37 97.3 34 ..........................T.......... GCCAAGGCACCCGGCGACCGACCACCGAGCGCCC 5468 37 100.0 35 ..................................... GTACAGCGCGAGGTGTCCGGCCGCATGTGTCAGGA 5540 37 100.0 35 ..................................... GCCGATGACTCGGTCCTGAGCACGGATACGCTGAC 5612 37 100.0 36 ..................................... AGCGTGCTCTAGGTAGTATTTGCCGCCGGCGTCTTG 5685 37 100.0 35 ..................................... GCGGAGCAAGTCAATGTCCTCGTTGATGCGCTCAA 5757 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 99.8 35 GCATCGCCCGGCAAGTCAGCCGGGCGCGGATTGAAAC # Left flank : TAAAGCACGCTCGGCATACCGGAGGCATCATGCTCGTTATCGTTACCTACGATGTGTCCACAGTGACGCCGGCAGGCCGAAAGCGGTTGCGCCGAGTCGCCAAGGCCTGTGAGCGCTATGGGCAACGGGTGCAGAAATCGGTGTTTGAATGTCAGGTCAATGATATGCAGTTCGAGGAGCTAGAGCGGCAACTGCTTGGCGAAATCGACGCCGAGGTCGACAACCTTCGCTTCTATCGTCTGACTGAGCCCCATCATCTAAGGGTAAAGCAGTACGGTGTCTTTCGCTCGGTAGACTTCGAAGGTGCTCTCGTGGTCTGAGCCGCGCGAACCTGGAGTGGGCTCACAAACGCGCATCTTTCGCGAAAATGCTAACGCTATGATTTTTAAGTACAATATTTCGTAGTGGCCGTGAGATTGCACCATTGGTTCTGCTGTAAGATTGCTGTTCGCGCGAAGATTGAAAAATCTGCAGCAAAATCTATGACTTATGCATGTGCG # Right flank : TTTTTCGTAACCGTTCACGGCCTCTTGAACCCGAAGTAGCTGACCCTTTTGGTCCTAGACTCAGAGTCGAGATCCGGTTAATGTTGGCGCATGCATCCGTTCATGCACGCGGTACAAGGCCGGCGCTGTTCGCCCGCGCTCAGGTTGATCACACGGTGCGATGACACCTGAGCAGGCACAAGCGATCTATGCGGCCGGAGAGCAGGCGGTTATCGAGCGCCTGTGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCAAGTCAGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.60,-16.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 5385-256 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRY01000028.1 Lamprobacter modestohalophilus strain DSM 25653 scaffold0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5384 28 100.0 32 ............................ GCCGCCACCGGCACCGCTGAGCAGACCATCGA 5324 28 100.0 32 ............................ CTGTGCAAGAGGCCATGCTGAGACTCAAAACC 5264 28 100.0 32 ............................ AGATGAGCCTGGTTTCATTGAGTCGCAAGTGC 5204 28 100.0 32 ............................ TGTAGGCGTGACATTCCTGGAGTTTCCTTCAT 5144 28 100.0 32 ............................ ATACTAAGACCGACTGCCATTATGCAATTGGC 5084 28 100.0 32 ............................ CATGGGCGGCTCCGTGGCGCTGGCTCGTCCGG 5024 28 100.0 32 ............................ AACGGGAACACGCCCAGGTCATCAAGGGATTC 4964 28 100.0 32 ............................ CTTCAGGAGCTGGGAGACGACATAGAGCGTTT 4904 28 100.0 32 ............................ CTCTTTCTGCGAATCCAGCCATTCCTCGTAAG 4844 28 100.0 32 ............................ TGTTCGACATCTTCAAGCGCAGCCTCGCTCAG 4784 28 100.0 32 ............................ TGCTCCATGAACGTTCTGGCTTTCTTGGAAAT 4724 28 100.0 32 ............................ TGGTGCCGCCGCACGGATCAGCACCTCACGCC 4664 28 100.0 32 ............................ TCGTCGGTGACGCGGTGACGAATGGGCATGTC 4604 28 100.0 32 ............................ TTATCAGACCCGCACCATTGCCGATCTATGGC 4544 28 100.0 32 ............................ AAATCAATCGTGTTAAATCCGCCAGCGAGCCC 4484 28 100.0 32 ............................ AGCTAATCGTGCCTGAGCCGACTGCGGGTTGT 4424 28 100.0 32 ............................ TAGAAGAGATCGGCAGCGACATCCAAAGCCAC 4364 28 100.0 32 ............................ TGCCGGCAAGGGCCGCGCAAGACGACTACACC 4304 28 100.0 32 ............................ CTGGACACTCGCCACCTTTGCGCTGAACCTCT 4244 28 100.0 32 ............................ CTGTTGATGGTGCTGCGGTTGATCATGCTGGG 4184 28 100.0 32 ............................ TTGCAGCGCGGCGAACTTCGACTGCCGACATG 4124 28 100.0 32 ............................ TGCAAGTCGGTGGCGAACTGATCGCCTGCACC 4064 28 100.0 32 ............................ TATTGATGCTCCTGATCCTGGTGATACGCCTC 4004 28 100.0 32 ............................ CGTTGGCGATTGGTGCAGTTCTTCGCCGCCCT 3944 28 100.0 32 ............................ ATGCAAGAAAACACTGGCTTCAAAGCCTTCAC 3884 28 100.0 32 ............................ GTTGGTGATCAGCGCCTCGGCCAGATGCGGCA 3824 28 100.0 32 ............................ CAGCGCCCGCAGCTTGGCCCCTGTCTCAGCTG 3764 28 100.0 32 ............................ GAGCCAGACCCTCGCCGATGCGACCGCGAGAA 3704 28 100.0 32 ............................ TGGTCCGATGTTGCAGGCGCGATCAGCACCGG 3644 28 100.0 32 ............................ ATACCGGCCTGAGTGGCCCAGGGACCGTCAGA 3584 28 100.0 32 ............................ TGCTTGCGTTCGTTGGGAGAATGATTGTCCGG 3524 28 100.0 32 ............................ TTTTCACCAACGGTGGGGATTATCGGATTTCC 3464 28 100.0 33 ............................ CTTGCGCGCCACCGATCGCATCATCTTGAGTAT 3403 28 100.0 32 ............................ AGGAAGCGATGACAGCGAAGCCGATAAGCGCA 3343 28 100.0 32 ............................ TCGGATTCAAAGCGCTTCATAGGCCGCTTGAT 3283 28 100.0 32 ............................ ATGCGGCCGGGGCGAAAACATAAAGGCCAGGC 3223 28 100.0 32 ............................ ATCGACATAGGCGAGCGCGCCAGGGATCGTGA 3163 28 100.0 32 ............................ TCAATTGGCAGGACTCATATCCGCAATTTCGA 3103 28 100.0 32 ............................ CATGGGCGAGGCCGGGAGATCAACAACGGTTG 3043 28 100.0 32 ............................ TGCTCCTCGGCCGGGGGCTGGCGTCATGTGTT 2983 28 100.0 32 ............................ AGTGCGGGATCTCAGGATCACAGTCAACGCGA 2923 28 100.0 32 ............................ ACTCCCCGGCCAGCGGCTAGCCTGCTCTTTGG 2863 28 100.0 32 ............................ ATTCTGGAATCCCGGCAGGCTTGGCGATCAGT 2803 28 100.0 32 ............................ ATGATGATGTTACCTGGTCGGATGTTGCAGGC 2743 28 100.0 32 ............................ ACCACGGTCCTGTTCGCCCAACTCCCCCTTGC 2683 28 100.0 32 ............................ TTGCCCGTAATCGCTCAAAGCCCCTGCATTCA 2623 28 100.0 32 ............................ ATGCTGAAGCTCCAAACCGAGCAAGCCCTGCT 2563 28 100.0 32 ............................ GCGCAAGGAAACTTGAAAGGGCACGACATCAG 2503 28 100.0 32 ............................ ATCGTTGCGTTGCCAACGGCGACCGACCAGGT 2443 28 100.0 32 ............................ ACATCAGCAAACCTTTGTCGATCAAGATACAA 2383 28 100.0 32 ............................ TTAGAGTAAGCTCTTGATATTGGTTCACCTCC 2323 28 100.0 32 ............................ GCTTGATTGTGATGGATGACGAAGATATGCAT 2263 28 100.0 32 ............................ AGCCCAAGACGTCATAGATGCGATGGTGATAC 2203 28 100.0 31 ............................ GACAGATCGACCGAAGTAGCAATGTCAGCAA 2144 28 100.0 32 ............................ ACCGAACCACCTAGTCACAGCCGCCCAGGTGC 2084 28 100.0 32 ............................ GTCGCGCCATCTTCCACATTCAGCGCCGTGCG 2024 28 100.0 32 ............................ TGCTGATGCGGCCCATTCCTGAACAGCGAGCC 1964 28 100.0 32 ............................ ACGCCGCCGGCATCGCCCGCGTTGCGATGCCG 1904 28 100.0 32 ............................ AATGCCGACGGCCGCCCGCTCGATCTACACGG 1844 28 100.0 32 ............................ AAGCGCTGCGAGTTGTTCTGGCGTTCGGACTT 1784 28 100.0 32 ............................ AGTGACGCTGTTCTCCGCGCTGGATGATGAGT 1724 28 100.0 32 ............................ TGACCGGTGAGGCTTAGGTAGCTCATGCGGCT 1664 28 100.0 32 ............................ AAGGGTCTCGCCCTCATCAAGATCATCATCGC 1604 28 100.0 32 ............................ AGAAAGATCGACCGAAGTAGCAATGTCGGCAA 1544 28 100.0 32 ............................ TTGTAGGCGCGTGCAACTGAGCCCATCGAGAT 1484 28 100.0 32 ............................ TACGACGGCCTCTCATGGACCGAAGTCGGCAT 1424 28 100.0 32 ............................ TGGCGAATGCCGTAGGTCGGTGCCGCTGCGAT 1364 28 100.0 32 ............................ GTAGAGGCCAACGCGATCACCCGCGTCGTCAT 1304 28 100.0 32 ............................ TTGTAGGCGCGTGCAACTCAGCCCATCGAGAT 1244 28 100.0 32 ............................ TACGACGAAGCTGTTGCTGACACCGCGACCAC 1184 28 100.0 32 ............................ TGTGGGCGCCTACGTCCGCAATGGCGCTCTAT 1124 28 100.0 32 ............................ ACCGAGGATATGGGCGACCTCTCCATTCCGAT 1064 28 100.0 32 ............................ CAATCGTGGAAGTTGAACGTGATACGCTCATT 1004 28 100.0 32 ............................ GATCTGATTCGCAACGGCGAATTGACCGAAGC 944 28 100.0 32 ............................ ACCGAGGCAAAGCGCTTCGCCCTGGAGCTGAA 884 28 100.0 32 ............................ ATGGACCGAGCAATTCCTTGCCGTGCTCAAGG 824 28 100.0 32 ............................ TTCCCGCGATGCTGCGGCGGCTCGTCTTGAAC 764 28 100.0 33 ............................ GGTTTGGAGCAGTGAAGAGGGCTGAAGAAGCAA 703 28 100.0 32 ............................ GATGACCCGCATCTGTTTAAGCCGTTGATAGG 643 28 100.0 32 ............................ AAAACGACACATTGAAGCGCATCAGGGTTAGC 583 28 100.0 32 ............................ ATTGATCACGCCCCAGTAATCCCCGATCTGCT 523 28 100.0 32 ............................ GTGATGAGGGTTACAAAAATCGTCAATATTTG 463 28 100.0 32 ............................ AGCGCGGCCGAGAGGCATTCGGCCTCGCTGAA 403 28 100.0 32 ............................ TCGCAGACTCCTTCGAGGACCTCTTCAACGGC 343 28 100.0 32 ............................ TATGACGAAGCCATCACCGGCACAAAAACCAC 283 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 86 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : TCTGGCGCGCTTGATGGCACAGGCCTGGCTCCAGGGAATGCGCGATCATGCTGAAGTCAAGGACATTGCGCCGGTGCCGAAGGACGCTGTTCATCGCAGCCTGCGAAGGGTTCAGGCCAAGAGTAGCCCAGAGCGCTTGAGGCGCCGACAGATGCGTCGACATGGGCTCAGCGAAGACCAAGCACGCGCTCGCGTCCCAGATACCGCGGCTGAGGCGCTACGTCTACCTTTTGTGACCCTGAGAAGCGCAAGTACCGGTCAAACCTTTCCGCTCTTTTTGCAACTAGGCCCGCCTTTACCGACAGCTCAGCCGAAGCACGACTTCAACACCTACGGATTGAGCGGCATGGCGACAGTCCCCTGGTTTTGACCCTTTTCCGGATCCTCCTCTTAAGCTACTGTTTTACAAGCCTCCCGCATGGCTCAAGTTGTGGAGGGTGTAGATGCTGATAGTTCTTTAAAAAGATTCAAAACCAAGAGCTTAAGTCAATTTTTGGCTT # Right flank : AGCACAAGCGCAGCTGGCCCGCACGCTGTCTAATGGTAACCGTTCACGGCCTCTTGAACCCGAAGTAGCTGACCCTTTTGGTCCTAGACTCAGAGTCGAGATCCGGTTAATGTTGGCGCATGCATCCGATCATGCACGCGGTACAAGGCCGGCGCTGTTCGCCCGCGCTCAGGTTGATCACACGGTGCGATGACACCTGAGCAGGCACAAGCGATCTATGCGGCCGGAGAGCAGGCGGTTATCGAGCGCCTGTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 203-455 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRY01000039.1 Lamprobacter modestohalophilus strain DSM 25653 scaffold0039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 203 35 100.0 39 ................................... GGCAACGGCAGCAACCAGGTGTTCAGCCCCGCCAGCTGC 277 35 100.0 37 ................................... GCCCGCGAGAAGCTGCCTGCAACCTGCGGCAGGTCGT 349 35 97.1 37 ............C...................... ATGCTGCGGAAGTAGCGCAGATAGTTGCCATGGGTGT 421 35 91.4 0 ............C.......A....A......... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 97.1 38 ATCGCCCGGCAAGTCAGCCGGGCGCGGATTGAAAC # Left flank : GACTCCGCGATGCCAGCCGCTCGAAGAGATCCCAACTCGGGTTCATCATCAACACGTCCTTCGCCTGGGCTGCGCTCCTGAGCACGGATGTCGGGGTTTCCACAGCCTGGGCTGAAGCCGCTGGAGGCGAGGCGATGGCAGGTTTCAGCCCCGTGAACGGTTACACTTTTTCCTACTGCCTTAGCCCCTCCTTGTCTAAGGCA # Right flank : CCAGCAAAACGTCGCGAAGCAAATTTTCCAAGGCGCACCGTCAAGCAGTCGGCGTTCAGTATTTCGCCCATAATAGCCGCTCGAAGCCTAGTGTCACCACGCTGAAGCAGCGCAGTCGTAATGCTCCGGCGTATTTGTTCTCTAGGGCTGTCCGGTATTCGGTCAATGCCGCCTCGGCTTGGTGGCGTTGTCTTGCGACTTCGGGGAGTTGTTCTAAGGCTTCCTGGGGCATCTCGCGGAGCTGTCGGCCACTGAGCTTGAGTCTTTCCAGGCTGAGATATTTGAACTCGATCAAGATATCCAGCAGTTGGTATTGGCGCATGTCCGGGCGGACAATCATGGTGAGATCGGCATAACCGCGCGCCAATTCGGTTTCTGAATCCAGGATATAAAACAGATTTCCCGCCAGCAGCATCAGAAAGACGGTCTTGATGGTCAATTCATTGGCCGAGGCATAATCCCGGTTGTCGAAGAGCTGCAGCCGCTTGCGCTCGATGAAT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCCCGGCAAGTCAGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 21881-20346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRY01000066.1 Lamprobacter modestohalophilus strain DSM 25653 scaffold0066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 21880 28 100.0 32 ............................ GTGATCAGCGGCTAGCCTGCTCTCTTTCTTCT 21820 28 100.0 32 ............................ CCCTGGATGAGTGGACGGTTCTAGCTCCGATT 21760 28 100.0 33 ............................ GTCGCGATCTCTTCCCCGACAAGTCTGGATCGC 21699 28 100.0 32 ............................ GCCGTGGAAAGAATTATCGTAGTGCGTAGAGA 21639 28 100.0 32 ............................ AGTCTGGCAAGGCAGATGTGGGGGATTGGTTG 21579 28 100.0 32 ............................ GTGTCGGGCGGTCTAGGGCGGCACCGTTAGCC 21519 28 100.0 32 ............................ ATCCGATGAATACAGTCACGCCGAAGCCGATA 21459 28 96.4 32 ......C..................... ATTTCATAGCTCGCTGTGCCGCCCTATGCCGC 21399 28 100.0 32 ............................ CGCGCGGGGCGCGGTCTCGCCCTCACTCACTT 21339 28 100.0 32 ............................ TGAGATGGACCGTCATTGCAAGGAATGCACTG 21279 28 100.0 32 ............................ TCAAGCCGGTCAGCGTAATCTCGCTCAAGCAG 21219 28 100.0 32 ............................ AATCCGGTTGCTCCCGCGCGGGTATGCCACCT 21159 28 100.0 32 ............................ AGCACGCCATATTCGTCGGTCACATCGCTGGA 21099 28 100.0 38 ............................ TGGGCGGGGGCTGGGGCTGGGGAATCATTCTCGGCCTA 21033 28 100.0 32 ............................ TGGCGTAGCTCTTTCATTCTGAGGGTTTTAAC 20973 28 100.0 32 ............................ TCGTCAATTACAAAGAATGCACCAGGATGATC 20913 28 100.0 32 ............................ ATCTTCACTGCTCCGCGCTCGAAGCCGTGGCG 20853 28 100.0 32 ............................ ATCAAAAGAAAAGCCTGAACGACAAAGAACTA 20793 28 100.0 32 ............................ GCCATCGGAACCGCTGAGCAGACCATCGGGGG 20733 28 100.0 32 ............................ TCACAGTCTAAATGGCAGGATCCTGCATTAGC 20673 28 100.0 32 ............................ ACATCATCGGAGCCCGAGGCGGCGGGGCTGAT 20613 28 100.0 32 ............................ TCACTGAACACCCGCGGGGACGCAACATCACC 20553 28 100.0 32 ............................ TCACTGAACACCCGCGGGGACGCAACATCACC 20493 28 100.0 32 ............................ AGCTGACGGCGACCGCTCCGCCCATGCCGCCC 20433 28 100.0 32 ............................ TCAAAGCGGTTGGCCTGCACATCAACGGCGGC 20373 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 26 28 99.9 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GCTCATGGATCTTGGAGAGCGTCTCGGGCGGAGACGGCGGGCGGCTGTGTTTCGGATGCCCGGGTTGGCCGCCGATGCGGTTGCCCTTGCCCTCAGCGGTGTTCTTGGGGCCTTTTTTCGGCTTGGTGAGGTCATCGGAGGACGGGCGTTTGCTGGACGTCGAAGAGTTCTTCTCCCGCTGGGCGAGCTTGCGCTGCAGTGCCTCGATCTCCTGCTGAGCGCTCTGCGCCTGCGCAGCGAGCGCACACAGGCGCTCGATAACCGCCTGCTCTCCGGCCGCATAGATCGCTTGTGCCTGCTCAGGTGTCATCGCACCGTGTGATCAACCTGAGCGCGGGCGAACAGCGCCGGCCTTGTACCGCGTGCATGATCGGATGCATGCGCCAACATTAACCGGATCTCGACTCTGAGTCTAGGACCAAAAGGGTCAGCTACTTCGGGTTCAAGAGGCCGTGAACGGTTACGAAAATCCTAAGCCGTCTTTACTGCTCCAAGCTCAA # Right flank : AATTACGCCCTGGGCCGCCTCAGCGCCGAAGAGTTCACTGCCGCATAGTACTACTTTGTTATCTTGCTCTATGCATCTGATATAGTTATCATTTTCCAGGCGACTCGTGACAAATAGATTCTGGACGTTTCATGGTCATACCCAAAAGCCTTGCGCGGCAAGATCCCTTGCGCTCGCTCAAAGAAAATCTGGCGTTTCACATTGAAGAATATTACCACCACTTTCAGACAGCGACGTCAGCGAACCATGAACTCGGCGAGGCGTATATCCGGGGTCTGTTTAAGACCGAAGCGAGCTGGCGCAACATGGAACGGATGAACGAGGAGTTGCAGATGTCCGGCGACGGTTACCAGCGTCTGCAGCAGTTCATTTCCGACTCCCCTTGGTCTGCCAGTGCGTTAATCAGTGATCTGGCCGTGAAGACCTCCGCATTCTACGCCAGCCAACCGAGCTATCAGCGCCGGGACGTCGGTTATATCCTCGATGAGTCGGCGCACCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17049-9920 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRY01000033.1 Lamprobacter modestohalophilus strain DSM 25653 scaffold0033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 17048 36 100.0 32 .................................... CATTGTAATGAATGTTATCCATCTCAATTCTC 16980 36 100.0 32 .................................... GGGTTATCAAATCGAACAGGGAAGAATCCCTG 16912 36 100.0 33 .................................... TTCTTTTTCAGTAATCGGATCGACAACTCGCGC 16843 36 100.0 32 .................................... TTCGTAGAGATAGCTGAACACCACCCTTGCCG 16775 36 100.0 34 .................................... AACTGCAAAATATACCTCATACTCTTTGTTGATC 16705 36 100.0 34 .................................... TTTTTTTGTGGTGTTCATTGACTTCTCCAAAAGG 16635 36 100.0 33 .................................... ATTTTACGAAGAACCTCAAATCCGAGTCTGAAA 16566 36 100.0 35 .................................... CAGATATTTCGCCGGGTGGAGTTCAACTATTATAG 16495 36 100.0 34 .................................... TCCAAGTTTGGTGGGTAAACGAAGACTAATAATC 16425 36 100.0 32 .................................... ACTTTGCGAGTCATGATTTCCTTATCGGTCTG 16357 36 100.0 34 .................................... TAATATTAAGTAAATAATTTTCTTCGCCTTTATG 16287 36 100.0 34 .................................... CCTTTCCTTGATCACTTCTTGACAGCCCTAGTGT 16217 36 100.0 33 .................................... AATGATTTATGATTATAATTGTGATCAAAACGA 16148 36 100.0 33 .................................... CTCAGACGAACTATCACAAAATCCAATATCGTT 16079 36 100.0 34 .................................... TAGAAATTTTAGTCACCTCTCCTTCTGCGTTCTT 16009 36 100.0 34 .................................... CCTGCAGGATATTGCCATATTTTCCCTGATACAT 15939 36 100.0 34 .................................... GTTTCAGTGGCGTTAAGAAAAACACCCATATCGG 15869 36 100.0 34 .................................... TTCTACTTTTAGCCAAAGACCCGCATCTGTGGGC 15799 36 100.0 35 .................................... AATTGGGAAGAAAGGCACGCCAATGATTTCCATTG 15728 36 100.0 33 .................................... CTTTCGGGTCATGATCTCCTTGCCCGTTTCCGG 15659 36 100.0 32 .................................... CAGTGTTGAAACCTTTCATCACCGCGTACCCC 15591 36 100.0 33 .................................... TTTTGGAACTTCGGAGATTGATATATTTGTATT 15522 36 100.0 33 .................................... TCACGAACGATGTTCGCAACCCAGTTAATGATC 15453 36 100.0 33 .................................... TTATTAATCAAAGCTGGTTTGTATATTATTAAG 15384 36 100.0 35 .................................... TTTTTAGAAATTTGCCTTTTGTTTGTTGAAAGAGT 15313 36 100.0 33 .................................... AGGGGCAGTTTTATTCAACAAAACCGTTTCCAG 15244 36 100.0 34 .................................... TCGCCCTTGATATGGCGAACCGTCCCAAGTGGTA 15174 36 100.0 32 .................................... CAGACGAGCTGAATCTTCAACGATCTCAGCAG 15106 36 100.0 33 .................................... GAGACCCAGCCCACGCTCGGCTTCCAGCACGCG 15037 36 100.0 34 .................................... TATGGGGTTCTCTACCATACTTACAGAAGTCATG 14967 36 100.0 34 .................................... GCCGAACGCTGAGTTTCCTTAGTTGCATTGAATG 14897 36 100.0 34 .................................... CATTCCCTGTTCTCGCATTGCTGCGAGCATCGGG 14827 36 100.0 34 .................................... TTCTATTTATAGAACTCTTCGTCGAGTCTAAATC 14757 36 100.0 31 .................................... TCGGGTCATTCTCATAGAATTCATTGATATC 14690 36 100.0 32 .................................... GATGGGCTTTCGCCGCTCGGTTATGAGCCGAG 14622 36 100.0 32 .................................... GGAATAATACGCCTAGCATATTATACTCCTAA 14554 36 100.0 34 .................................... TTTGGGCATTGATCTCTACAAACTCTTCGTAACG 14484 36 100.0 32 .................................... ACTAGTTGAAGCTGGAGATTGGGATAATTCAT 14416 36 100.0 33 .................................... GAACTCGTCCTGCACAAACAATTGAAGTTGTAG 14347 36 100.0 34 .................................... AATTGGCGTGAACAAGGACGGGTTTCTCTGAAGA 14277 36 100.0 32 .................................... CTGAATGTATGGCGTCGAATAGTTTAAATTCA 14209 36 100.0 33 .................................... CTACAGACACGTATGGTGCTGTAACTTTTAGCT 14140 36 100.0 34 .................................... CCTCCTGGGGTTCCGATTCAGTTCCGTCTGAAAA 14070 36 100.0 35 .................................... GTTTGCCCATTGAGCAAAGCAAATAGACCATCCAT 13999 36 100.0 33 .................................... AAGGGTTCAAGCCGCCTTTTTACGGGCGACCTC 13930 36 100.0 34 .................................... TGTTAATGGACGAATCACCTGGTCTTGCCAAACC 13860 36 100.0 34 .................................... TAAGACGTTCAAGAATCACCAGACCCGCCTGATG 13790 36 100.0 35 .................................... TCACGAGTCGCATTCCGGTGACACCTTCCCCAATG 13719 36 100.0 34 .................................... CCGCTGTCGCCGCATAAGGCGCGGCAACTTTAGC 13649 36 100.0 33 .................................... ACATATCCCATAACTGGAGGTTCAGAAATGAAC 13580 36 100.0 34 .................................... TACAAAGTATCCAACGATCCAAGCGGTTGCCGCA 13510 36 100.0 33 .................................... TATTCTTCTACAATAGCTTGGGCTTTAAATTTG 13441 36 100.0 33 .................................... GCGGCATTGATGCCGCGAGTGACGGCGTAACCC 13372 36 100.0 33 .................................... AATTAATCTTTTTAGATAAACTTTGTTTCAACA 13303 36 100.0 34 .................................... GAGTACTTTGAAAACTCAAAGACATCCGTCTCCC 13233 36 100.0 33 .................................... TAGATTGCTCCATTATTTTGATGACTCCAAGTA 13164 36 100.0 32 .................................... TTTATTTATATTTTAAAATGGAATACCATCGT 13096 36 100.0 32 .................................... AATCTCCTTCAAGGTGTCCAACCTTGAAGCTC 13028 36 100.0 35 .................................... CTTACAGGAACCTCATTTGTTCTGTGAGTTTCTAA 12957 36 100.0 34 .................................... GATTGGCCATTGCAATCTCTTTAGCAGCATCTAG 12887 36 100.0 35 .................................... GTGTTAACGCTCTCTACGAGCGCGGTCTTGTCTGG 12816 36 100.0 33 .................................... CTTTCTTAGCCTTGTCAGAAACCTGGCGCTTAA 12747 36 100.0 33 .................................... TATCTGATTATTCTCCTTCCGTTAGTTTTACTG 12678 36 100.0 33 .................................... TTCCTTTGTGTTCGCTGAACCATTTTTCTCCGT 12609 36 100.0 34 .................................... AGCAACACCTTGGTTTCTAAACTTTTTTGGAACA 12539 36 100.0 33 .................................... TTTTCTTTCCTTGATTTTTTTCGAAATCTTTGA 12470 36 100.0 33 .................................... TAGCTGAGGCTCTACATCACGCTGCCACTTCTC 12401 36 100.0 34 .................................... GGAGCGGAAGCTGTCTACTTCACCGACCATCCTG 12331 36 100.0 35 .................................... ATGTCCGTAAAACCCTTTTGGGTTCATAGATTGAG 12260 36 100.0 33 .................................... GTTTTATTTTCGGAGTCCTAATCTTAGGAACTC 12191 36 100.0 34 .................................... CCCCTGCCTTGAAGACAGCTTCCACTCCATAATG 12121 36 100.0 35 .................................... TTTGGAGGGTTAAGATGAACTGTGCAACCAAACAG 12050 36 100.0 36 .................................... CATTATGTTTTTTTCATCGCTGGTCCTAATTTAATA 11978 36 100.0 32 .................................... CAGGTCTGTCAATTGTAACAGGATAAGTTGCC 11910 36 100.0 35 .................................... GCGGGATTGAGCGGTAAATCCATCATTTCTCGCTC 11839 36 100.0 34 .................................... TTTAACAGAAGGACATAGTTGATTAAAACTATAC 11769 36 97.2 34 ..................G................. CAGATCTTCTCTCTTTGGCTCATAGTATCGCCTT 11699 36 100.0 34 .................................... CAACCTTCCATACAGCCTCTTACCAAGATCTCAT 11629 36 100.0 34 .................................... TGGCCGAATCCAATCCCAGGAAAGTTTAAATGAG 11559 36 100.0 33 .................................... CCTTAAAACCCGCGTACATCGACTATACCCATG 11490 36 100.0 33 .................................... GGATCAATACAATTTTCAAGGTATTGGCTGCTA 11421 36 100.0 33 .................................... ACGCCAAATTAATGGCATTGATGACGCCTCCAA 11352 36 100.0 33 .................................... TCCAGCGCCTCCAGTGCTACGTTGCATCACCGT 11283 36 100.0 35 .................................... ATTCGGGTTTGTCCTCAGTCGAATTCTAGAGGAGA 11212 36 100.0 34 .................................... CAACACGGAATCTACGAACTGGATTACGGATAGA 11142 36 100.0 35 .................................... TTTTTTTGGTGTTTTCCGCCGCCGTGATTCCACGA 11071 36 100.0 35 .................................... TTTCTTTGTTTATTTTCTTTGATCTTTTCTTGGAT 11000 36 100.0 35 .................................... TTTTAAATGTCGCTTTGGTCTGACCAAAAATGTTA 10929 36 100.0 31 .................................... CATTGCCAAAAGCCGGACTAATGGTACAATG 10862 36 100.0 35 .................................... AGGAAGGAAACTGATTTCTCAGTTATTCGGTCTAG 10791 36 100.0 33 .................................... GGCCATCTTTAGCATAGCAAACGCAGCTCGTAG 10722 36 100.0 33 .................................... GGTTGTTTCTTCCTGCTTATTCGCGGTGTTGAA 10653 36 100.0 34 .................................... TTATTCGCGGTGTTGAACCCGCGCATGACTGCAT 10583 36 100.0 35 .................................... GGATTTTTCGACTTGGGAGCGCATCATGTGGACGC 10512 36 100.0 34 .................................... TATTACTCTTGGTTCCTTTACTAGTATACCAGGG 10442 36 100.0 33 .................................... ATATGGGTTAATATTCATAGTACGTTCAATAAA 10373 36 100.0 34 .................................... CACAGTTCATTTGTTACCCTCCTGGGTAATTAGT 10303 36 100.0 33 .................................... TTGGTCTTTCAGGCATTGCCTCCAGACAACCTG 10234 36 100.0 34 .................................... GTAAGATGCATTATCACCGAAACATTCGACATGG 10164 36 100.0 34 .................................... GGTCCACTGGGGTTGAGGGGGAGATTCATCATCT 10094 36 100.0 33 .................................... AATATAAGCAAACCAGGAAGGATAAAGCACACG 10025 36 100.0 34 .................................... TCGTTGATTCCAACCCGAGGGTTAGAAACATCGC 9955 36 88.9 0 ...........T.....T.G.....T.......... | ========== ====== ====== ====== ==================================== ==================================== ================== 103 36 99.9 34 GTCAGCTGCATCGAGCCGAATCAGAGGCGATGAAAC # Left flank : AGCAGCGAACCGGCTGAGGTCGGTACCGTCCAGTAACCAACTCATCGACAATGCGCCCAACGTGCAGAGGCAAATCTCGCGCCATGTCCTCCATCGTGAGATCCGATGTCCAGCGCGAACGGTCATTGTGCACTGCACGCCAAGCTGTATTGAGTACCTCCGGACTTACCATGCGCTCAATCATCTGCCCCATCGTCGTTCTCCCAAGCTATATAGGCTCGTGCTCCGCCCGAAACGCGCGATTCAAAGGTATCAATCCGTTACAACGCACGTAAACGAGCGATTTTCACTACTTCTCACAGAGTAGAGGTTCCGCCGGTAAGGAAATAGCATAAGAATCATAGTCTTATAAATCTGCAAACCTGCCTGTTGGCTAGCGTCGCCTAGAACTCTGTGCCATACTTCCATCACCCCCTGACCGAGAGAGGTCACGCAAGCATGCGTCCATGGCCGATTAAACAACTGTTATGTAAGCGTTTATCTCGGTTATCCACAGGTGG # Right flank : GCTCACTATCTCAGTACAAAAACAGTCCGATACGTTTGTGTTCTTAATACTTGAGAAGCTGTTGTACAGCGGCCGTTGTCTAGCCGCTCTTGTCCCTGTCCTCGCCTGGAGCGCGAGAAAGTGGTTTGAAAAGTTCGTGTTCACTTGGCTATGATCGAAGACATCCTGCCAGCGCCACTCAGCCGCACGCTGAAGACGCGGCGAAGCCAGGTCTAGTCGAACTAAGGCCAAGGAACCACCAGCATGACGCTCAGCCCAACTGACCCCCGCCCCCCCGGCCATCTGCTTCTGCTGATCGGGAGTAACCCGGTACCCAACGCCGTGGCTGCTCGACGGCTGGCCGGACCACTCACCCGAGTCAGCCTGCTCCACTCGAGCGAGTCCCGTCTGGTCGCTGAGCGCCTGGAGTGCTGGCTGCGCGAGCACTGCGCCCTGTCAGCTGACCAAATCGCGCTGGTGGCGCTTGATCATCCGGGCGATGAATACCGACCCGCAGCGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTGCATCGAGCCGAATCAGAGGCGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //