Array 1 78123-77758 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGAB010000004.1 Paracoccus yeei strain Marseille-P2668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 78122 31 77.4 36 .CAATT..A.A.................... ATGAAGAAAACAAACGGCATCCATTTCGTTTGCTGG T [78110] 78054 31 100.0 37 ............................... GGTTAAACGCTCGTTCTTCGCTCGTTTCGATTCCAAG 77986 31 100.0 37 ............................... GAAGCGAAGGAAGATCCGCGCGAGACGGAAGACCGCG 77918 31 100.0 34 ............................... ACGCGCTGTCTGACGCGATCAAGGTGCGCGGTTT 77853 31 100.0 34 ............................... GATGACGAAATCAAGCTGCCCGTTCTGGCGCAGA 77788 31 77.4 0 .............A.A.A.A...C....GG. | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 92.5 36 GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Left flank : GGGACCGCACCGATGCCAGCATGGCACGGCGGCTGGACGGTTTCCGCGACCCCGTCCCGCCCGCGATCACCGCGGCAGCGCTGCCCGACCTTGGCCCCGTCCTGCGCGAGCTGGTCGCGTTCCGGGACGGCAAGACGCCGGGATTTGACATTTCGGTGGCCGCGCGGATGGTGTTTTCCTGCCTGGTCGATGCCGATTTCCGTGACACCGAGGCGTTCTACGCCCGGCTGGACGGCACCCGCCCGGACCGCGAATGGCCCGCCCTGGCTGAGTTGCTGCCCGCCTGGCGCGCGGCCTTTGACGCGCATATGGCGACGTTCTCGACAGAGGGCGAGGTCAACGGGCTGCGCGCCCGGGTGCTGACGCACGTCCGCCAAGGTGCCGCACTGGAGCCGGGCCTGTTCACCCTGACCGTGCCGACCGGAGGGGGCAAGACCCTCGCCTCGCTGGGCTTCGCGCTGGACCATGCGGCGCGGCATGGAAAACGCCGGATAATCTTT # Right flank : GGCACTACAGCGCAACCCAGAGCCTGACGCTCTGGTCGCCCCGTTCCCATCCTCCCCTCGAAAAGGCCCGTCCTCCACAAAGTCCCTGCCTCCCTCAGGCACACCTGCGCCACCCCCGCCCCGCACCTTCTGCACATCGCCGTGTTCACGGGGAACGGAGGCGGGCGTCGTTCGTTGCCTTGTCCTGTGCCAAGGAAGGTTGCAATGCCCGACGAGCCTGACGACATCATCCCCGTGATCCAGGAACAGGTCGGCGTCAGCGTCGAGCGGCGCCTGGCCGGGCGGGTCCGGGTCAGCGTCCGGACCCAGACCGACGAAAGCCTGGTTCCGGTGGATCTGACCCAGGTGGATGTCGCGGTCGAGCGTGTGCCTGTCAACCGCGCAATCGATACAGCCCCCGAGGTCGTCACCCGCGGCGATGTGACCATCATCCCCGTGGTCGAAGAACGGCTTGTCCTGACCCGGCAGCTTTATCTTCGCGAAGAAATCCACATCCGGCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1487-1154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGAB010000086.1 Paracoccus yeei strain Marseille-P2668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1486 29 100.0 32 ............................. TCGGGCGGCTCTCTGACGCAGACGCTGCAACA 1425 29 96.6 32 .........................C... CCTCTCGACCTCGGCCCGCAGGTCGGCCTCTG 1364 29 100.0 31 ............................. TGGGTGCCGCATGTGGAGCAGCGCGGTGACA 1304 29 96.6 32 ................G............ GTATGGGATGGAGCAAACTGGGTGACAGCGGA 1243 29 100.0 32 ............................. GCAGAAACCGCCGTCGCCCTGCGGGAGCCCAC 1182 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : ACCAGCCCGATCGCGCGCATGCCAGCGAGACCTGGCGCAAGGTGGCCGAGCAGCTGCGCCCCCGCTGGCCGAAACTGGCCGACCTCATGGATCGAGCCATGAGAACGCCACTGGTCCGAGTGACCATGGCGAGGAGCGAACACGATGTGCTCGCCTACATGTCCTTCCCCCGTCAGCACCGCACCAAGCTTCACAGCACCAACCCGATCGAGCGCTTGAGCAAGGAGGTGAAACGCCGCGCAGATGTCGTTGGCATCTTCCCAAATGAGGCATCCATCATGCGGCTGATCGGCGCCGTGCTCTTCGAGCAGAACGACGAATGGCAGACATCCAGCCGATACATGATGGTCGAGGCCTTCGCCCAGATCGACAAGGAGGAGGTCGACCCCATCCTCAGCATTACCACAAAGGCGGCCTGATCATGACCTCAGGCCATCACGGAATTTACACCATCTTGACGGACGTTACCCCGGTTATCGCTTCGGTCTGGCCGATTTCCC # Right flank : GCCACCAAAAAGCGTCTCGCCGATCAGGACTATCCGGCCGCTCTAGATCGTAAGCTTGGGCCGATAGTGGTGCTCCATACGAATGGCCGCTAATGCAACGTTTCTGCAGTCACTATGCCGCAACGCGGCTGACAGCTTTGCGCGCAACTTGTCGCTCTCGACCTACATAGCGAACGGCAGCTTTCTCCAGTTTTTGCGGATGCGATGCCGCACGCTCACAGTCCGCTCGCCGCCCGATGCTGCTGGATTCGGTGTTGGGGCAGTTTTCGTGACTACCGCCCCTTTGGCTGCTGTGGCCCGGCTATGGCTGAGATAGATGCTTGATGAGCGCGGGCAGTTCAGTCTGCACTGTGGTCCAGACGACATGCAGGTCGATGTCGAAGTACCCATGGGCGATGCGGTTACGCATCCCGCGGATCCCGCGCCATGGGATCGCAGGCTTTGCATTCGCAAAGTCGGGGTGATCCGATAAGATCCGGCTCGCGGCCTCTCCAACGATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18424-21442 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGAB010000047.1 Paracoccus yeei strain Marseille-P2668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18424 29 100.0 32 ............................. TACGGGCAATCCCTGGCCGAGGGTGAGACGAC 18485 29 100.0 32 ............................. TGGGCCTGCGCGTTCAGCGGCCCCATCGGCTA 18546 29 100.0 32 ............................. GATACCGTATGGGCTGGTGACGGCGACGATTT 18607 29 100.0 32 ............................. AGCCCGACCTAATCTCGCATTCGGGGTGTGGC 18668 29 100.0 32 ............................. TCATCCAAAGGCGACGACCTGATCTACGGCGG 18729 29 100.0 32 ............................. GATACTCACTGGTGCCGTGGGGTGCTGGACGG 18790 29 100.0 32 ............................. GGCTTGCTGAACCCGTCCTGCCCCGCTTGGTA 18851 29 100.0 32 ............................. CATATCCGCGCAGCTGCCGTGATTGTCGCCTT 18912 29 96.6 33 ............................G CTCGCATTATTGGTCGCACACATCATCGAGCGG 18974 29 100.0 32 ............................. AGTAACGCCACGCCGACCAACTACCCGGTTCT 19035 29 100.0 32 ............................. GACCAGCGGGGCAACCATGCGGATTCATTTGA 19096 29 100.0 32 ............................. GTCCGCTCTGCCGTCTGGCAAACCGCTCTGCA 19157 29 100.0 32 ............................. GTCAGCGTGACCAAGGTTTTCGCTGATGGCGC 19218 29 100.0 32 ............................. CTCGCGGCCAAGATCGTCCGCATGTCGCCAGA 19279 29 100.0 32 ............................. TCGCTGGGGTGCTATGTCCTACCCTTCGGATA 19340 29 100.0 32 ............................. GCCGAACAGCGGGAGCGATACATGCAGCGATT 19401 29 100.0 32 ............................. ATGGATAGCTATTTCGCCTCTCTGGGGGTTGC 19462 29 100.0 32 ............................. GTAGGCACAGGCCGCCTCTGGTATAACGATGC 19523 29 100.0 32 ............................. TTCGGCACGGCAACACTGATCGCCACCGTCGC 19584 29 100.0 32 ............................. CACCCGTGCTCCATCGCCACCTGCGAAGGATT 19645 29 100.0 32 ............................. ATGACAAGCAACAGCGTGGAATCCAGTATCAA 19706 29 100.0 32 ............................. GGGGCGCAGGTGAAGCGTCATGCCGATTTTAT 19767 29 100.0 32 ............................. ACAGGTTCCGGCTTGTCCATTTGTTCGCACAT 19828 29 100.0 32 ............................. CAGCATCCCCAAGCGAGGTGAAACATGACCGC 19889 29 100.0 32 ............................. CAGTCGATTTTCGCTTGGAAACGGGACAGGGT 19950 29 100.0 32 ............................. AAGCAGCAGTCCGATGCGCTGGCCCTGCTGAT 20011 29 100.0 32 ............................. CAATCTGGTGGGCCTGAAAGCGCGTTGGCCCA 20072 29 100.0 32 ............................. GTGACGCCTCACGACAACATCACAGCGCATGG 20133 29 100.0 32 ............................. CACCGGGTGGCCGGATCACCACTGAAAAGACT 20194 29 100.0 32 ............................. GATACCGTCTGGGCTGGTGACGGCGACGATTT 20255 29 100.0 32 ............................. GGGCGGTGGTGCCGGGCCGACGATGGCTGGCA 20316 29 100.0 32 ............................. GTGGGGTCATCACAGTCCACTACCTCGGCGAT 20377 29 100.0 32 ............................. CTGAGCCCATAGCTCACGGAAGAACCGGCGGG 20438 29 100.0 32 ............................. AAAGCCTGCAATCGCGGCTTGGTTCGGCTGAA 20499 29 100.0 32 ............................. TACGAACGCCAGCTACGGGAAATCCAAGACGA 20560 29 100.0 32 ............................. GCCCTGCGCGCCAAAATGGACGAGATGGAGCA 20621 29 100.0 32 ............................. CTTCTTCAACCGGACTTCTATCCCTCCAAACG 20682 29 100.0 32 ............................. CTGCATTGCAGGGGTGCCATCCGGGGCGGGAA 20743 29 100.0 32 ............................. CGTATCATGCCTGATACAGCAAAGCCCGCCAA 20804 29 100.0 32 ............................. GCGCTTAATCATGGCGGCGCAGGCAACGCCCC 20865 29 100.0 32 ............................. CCGCATGGCGCGGGTTTTGCACATGCGAGGTA 20926 29 100.0 32 ............................. GAAGTCTGGTTCGGGAAGCGTTTGATGCACGG 20987 29 100.0 32 ............................. TGACGCAGGAGAGCGCCCAGATCGAAAGCGCG 21048 29 100.0 32 ............................. ATGCTTGGCAAGGTGCTTGAGGATCCGCTGGC 21109 29 96.6 32 ....................C........ CTCTGCCGGATGTAGCTGGGCGAGAACTCCAT 21170 29 100.0 32 ............................. CAGCCAGCTATCCCGCCTCTCTCTCATGACTC 21231 29 100.0 32 ............................. ACTTTATGAGGTGCTAGGGCCGAAGGTGCAGG 21292 29 100.0 32 ............................. GGGCTCACGCCTGTGGCCTCGACCGGCGGTGA 21353 29 100.0 32 ............................. CGCCCAGCGCCTGCGACAGCGTCTTGGCCCGA 21414 29 93.1 0 .....G..................A.... | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.7 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : GCCCGTCGCGTCAAGGACCACCCGACCGAAAACATCGAGCGCGTGACCCGCCGCCTGACTGGCGACACCCTTGCCCGCAGCCAGACGATCCCCGCCATGATCGACCGCATCAAGCGCCTGATCGAGGCGGCCTGACATGGCGGGCCAGATGACCACCGTCGTGACCCGCGATGTCGAGGATCGATATCGCGGCTTCCTGACCTCGGTCATGCTTGAGATCGCGCCGGGGGTCTATGTCTCGCCGCAAATGACACAGGGGGTCCGCGACCGGGTCTGGACCGTGCTTTCGGACTGGTGGGCGGCCCTCGGGCGCGGCTCCATCGTGATGACCTGGCGCGACACGAAAGCGGCGGGAAATCTGCGGATCCTGACACTTGGCATTCCTGCAAAGGAAATCGTGGACGCAGACGGGATTTTGCTCGTAAAACGAAAGTAGGGATCGTGTCCCACACGTGATATGCTGTTTGAAATCGTTGTAGATCAGCAATATGCTGCCAAGA # Right flank : CTAGCATGGCCGGCTCATGTCCAACCCTAACCAGTAAAAACCAGAAGGAGGCAGTCACCCCGCGGGCGTAAGGGGGTGGACTGAATTTGGGCATAACCGTTCAGCGCACCGTCGGCCCCGAAGATGACTGCCCCGACCTTGCGAGTCCCGCTTGGGGCAAGGCGGCTTGACGCATCCAGTTGCATCCAAACGCTTTCAGGATGGCGGGAATATTGGCGGGTATAATAAATTAATCACAAAAAAATTTTTCATATCAATGATGTATGGCGGACGGTGAGGGACACAACTTATCGTCTATTTTCATGGGATTGAATTGGAAAACAGAGATAATGCGTCCCCTTTTGAACCAATGGGTTAGCTTAGAGCGTGGAAACCCTAACTTGGGCGCGATCACCCGACCGGCCTGAACTCCGGCCCCGGTTTGAGCCGAGGGGCGGTGATGGATTTTTCTCGAACGGGTGCATTTTTCTCTTGCGCACTGTCCCATAATGTCGCATATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //