Array 1 17446-15956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054921.1 Streptomyces sp. NA03103 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 17445 28 100.0 33 ............................ TGCCCACGTCCTGCAGCGTCGACTTGTCGCCCT 17384 28 100.0 33 ............................ CCCGAAGTCCGACAAGACCGCCTGAGAAAGGAA 17323 28 100.0 33 ............................ CCTCGGCCTCTGGCAGAACCCGGCACCGCTCAA 17262 28 100.0 33 ............................ CCAGGCGACGAACGGCCTGTCCGCCGTGGCGAC 17201 28 100.0 33 ............................ ACGTCGCCTCCAGGACGTTCCTGCTCCCCGACT 17140 28 100.0 33 ............................ GTTCTGAGAGGCGGCACCGAGATGGGCAAGGAC 17079 28 100.0 33 ............................ GGAGGCGTACCTCGAGGGCCGCCTCGCCGACGC 17018 28 100.0 33 ............................ CGGCAAGGGCGGCTACACGGTGCGGTTCTACAC 16957 28 100.0 33 ............................ CCGTTCTACGCGTACACCGTCGGCCTGGCCCGG 16896 28 100.0 33 ............................ CAAGTCATTTTCCGGCGGGCAATTCTCGACTCG 16835 28 100.0 30 ............................ CCTGGGCATGGGCGGCGGCGCCCTCCAGGT 16777 28 100.0 33 ............................ CGTCGTTGTCTGGCACACGACCGAGGGCACGTC 16716 28 100.0 33 ............................ CTAGCCCCCGCCCCGCACGCCCCGCGCCGCCCC 16655 28 100.0 33 ............................ GTCCTCCGCGATGGGGGTGTGGGTGGTCACGGG 16594 28 100.0 33 ............................ GCGGACGCGCGTCGCCCGCATCCCAGCAGCCTA 16533 28 100.0 33 ............................ GTTGCGCACCCTCGAGGAGTGGCTGGACTGGCA 16472 28 100.0 33 ............................ CAGACTCGGGGTGTTGGCCCCGAGCGTGTTGTC 16411 28 100.0 33 ............................ GCGCCGGCACTGCGTCTCGGTGCGGCTCACCGA 16350 28 100.0 33 ............................ GTGGAACGGCTACCGCGGGCACTGCGGGCACCA 16289 28 100.0 33 ............................ GAAGGCGGACGAGGCCCGGGCCGCGGCGACCAT 16228 28 100.0 33 ............................ CACGACGACCGGCGACGTCCTCGAATACGACCT 16167 28 100.0 33 ............................ CCTGTTCAACCCCGACGGCAAGGGCACCGCCCG 16106 28 96.4 33 ........T................... CATCGTGTACGCGGCGCAGATCCGGGGCATGGC 16045 27 96.4 34 .....................-...... GCCGACACAGGGGGACCGCAGGGCCTCCGGAGGT 15984 28 71.4 0 ...........ATTC.......GG..CT | A [15961] ========== ====== ====== ====== ============================ ================================== ================== 25 28 98.6 33 GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Left flank : CAGCCGGCAGCCGACCCCACGTCAGTCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCAGGCCTTACCGCAGTCGTGGATGCCGCACACCCACATGAACCACGCCCGCCCTCGGCCACCGCTGACCTCGTCCAGCCGCCGCCGGAACGCGACCGACACGTACTGGTCCCACATCACCCCCGCCACGGCAGCCGTGTCCAGAAGATGCCCCAGCAGCAGATGCGTCCGCCCGCCGTTACGCGCAGCCGACTTCCCCCACAACCGCGACACCCGTACGACGACCTCGTCGGCCAGGCCCATCGACCGCATCAACTCAACGACCGACCGCTCGTCCTCCACGCCCGCCCCCTGAAGACTCGGCTGCTTGCAGCCAGTTGGTGCCGGCACTGTAGACGGAGCCACTGACAATGCCTTCCGAGCCCGAAGCGAGGTGAAGGAAAACAGGTACCCTTGCGCACATCTCCGCAGTTCACGAAGT # Right flank : GAGGTCAAAGCTGTGGCCCTGGCAACGCACCGCTGTTCCCCGCACCCGAAGGGGGGCCGGCTGCTACGAAGCGGCACGTTTCGCAGCTGACGGCTCCGAAGCAGGGCCTCCTGAGGATCGCTGACCTGACGCCCGACCCCGTAGGTATTCGTGGCGGTATACTTCCCGGTGTGGATACGACGATCAAGATCGGTGCGGAGACCCGCGACAAGCTCGCCGCTCTGGCCGAGGCCAGGAACATGTCGATGCGGGCGTTGATCGAGGAGTTCGCCGCGACCGCGCTCACACCTGCGCAGTTGCGCGAGCGAGCCGAGCGCACAGACGCGTTCTTGGCCGCAGAGTTCGGGCACCGGGTCAGCGACGACGAAGCCGGCGCGTTGCGTGAGCGGATGCGGCAGGCGCAGAACGCCGGACATGCTCGGGTTCGGGGCACGGCGGCGTGATCGTCGAGCACTACGTTCTGGACAGTCGCACACTCCTTGCGCTGGGGGGCAACAAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27934-29913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054921.1 Streptomyces sp. NA03103 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27934 28 100.0 33 ............................ CACGGAAGGGGGGACCCGCTGATGGCTGTCGAC 27995 28 100.0 33 ............................ TGCGTGCCCCCGCGCAGCACCGCCGCCCCGGTC 28056 28 100.0 33 ............................ GGCGGCGGAAGGGCTGGCGCACTTCGGGCAGCG 28117 28 100.0 33 ............................ CCAGCGTCGGATCGTAGCCACGCGCGATCATCC 28178 28 100.0 33 ............................ GTCGGGCGGCCCTTCGGCGCGTTCTGGGGATGG 28239 28 100.0 33 ............................ GCTGTTCCCGGCCGACACCGGCCAGGGGGCCAG 28300 28 100.0 33 ............................ GTCGGCCGCCCTCTGTGCGCCGGCGGACAGCTC 28361 28 100.0 33 ............................ CTCCAGTGCCTTCGCGGCAAGTCCGTCTCGGCC 28422 28 100.0 33 ............................ CCCACCTCCAGGTGGTGATTGTCGTTCGATGAA 28483 28 100.0 33 ............................ CTGATGGCCCGAGACTTTGCCCGGGAACTGGCC 28544 28 100.0 33 ............................ GCCCGCCATGTCCGGCGCGATCGCTCTCGCCCA 28605 28 100.0 33 ............................ TCAAGCGGCGACGGGGACGAGGTCCGTGATGGG 28666 28 100.0 33 ............................ CATCGGCTGGTGCACGAAGTACTCGGTCTCGAA 28727 28 100.0 33 ............................ TCGGCCGCGCAGCCGAGTCACAGGCCCGGCTCA 28788 28 100.0 33 ............................ CGGCATCTACACGATCACCTCGGGCGCCGGCGC 28849 28 100.0 33 ............................ CGAGTGCATTACCTGGCTAATGCCTTCGTTAGG 28910 28 100.0 33 ............................ CTATCCAGTAGCCACTGTGCCGCCCGCCCTTCG 28971 28 100.0 33 ............................ CTCGGCGTCCCGCATCTCCTCGAACACATCCAC 29032 28 100.0 33 ............................ CGACGGGCGGCCCGTCATGGTGCAGGCCCGGGT 29093 28 100.0 33 ............................ CACGACCGCGGACGTATCCGCAGCGACGGACGC 29154 28 100.0 33 ............................ CTTCGTCGTCCTCCTCGGCGAGCGGATCGGTCA 29215 28 100.0 33 ............................ GACCGCACTGGAGGGGCTGTGAGCATCGCCCAG 29276 28 100.0 33 ............................ CGCGTCGGCGTACGTGTCGGCGCCGGGCAGCGC 29337 28 100.0 33 ............................ ACCAGCACCCTCCACCAGCGGCACCGCACCCAC 29398 28 100.0 33 ............................ GTGACCATGCCCATGCGCCCCAACCGCCGCACC 29459 28 100.0 33 ............................ CTACGACGTGCCCGGCGATGACCTCCCCTCCGG 29520 28 100.0 33 ............................ GATCGGCGCCCGAGGCGTCCTCTTCGCCGACCG 29581 28 100.0 33 ............................ CCCCTCCCCTCCCCCGTCCACCCTGGACGAAAG 29642 28 100.0 33 ............................ GGGGATGCGCGTCGTCGTCGTGGGCGACCTGCG 29703 28 100.0 33 ............................ GACGCCGAGGTACAGGCGGAGGTCGCGCGCATC 29764 28 100.0 33 ............................ CCTCGCCTACAACGGCACAGGTAGGCCGGAGCC 29825 28 96.4 33 ..T......................... CTGGCCCTCCATCAGGGCTCAGGTGTTGGCCAG 29886 28 96.4 0 ..........................C. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 33 GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Left flank : GGCGGCGACCTGCCGGACGAGGACATGGGCGCCCTCTGGGACGACGGCGACACGGTCGTCAGCAGTGGCCGCAACTGGAGCGCCACGCACCACCTCGACGTCATCCCTGAACCCACTCCTGCCGAGCCGGCCCCATGAGCACCGGGACGACCGTGGTCGTGCTCATCGCGGCCCCGCCCGGGCTCCGGGGGCACCTCACCCGCTGGTTCGTCGAAGTGGCCGCCGGCGTCTTCGTCGGCAGCCCCAACCCACGCATCCGCGACCGTCTCTGGTCCGTCCTCGCCGAACGCATCCACGACGGCCAAGCCGTCATGATCGAACCGGCGGCCACGGAACAGGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGGCCCTGATGGCCCGCCCACGCCAGGCCGGACAGCGCTGGCGGCCCGCGAACGAGGTAAAGGAAAACAACATGATCACCTGACGAACCTGCAGGTCAGGAAGT # Right flank : CTTCATGTCCAGGCCGCCGACCTTGATGGGCACCAGGGCCTCGTCGGCGGCGGTGAGGGCAGCGACGGTGACCGGCCCGAGGGACGGCGCAGCGTCGATCAGGGTCACGTCGTACGGGGCGCGACCGCCGGCCTCCTCCGCCTCCTGCGCCAGGGCGGCGGCGAGGCCCTGCTCCGCACCGATGGGCCGCTCGTACTCCACGCGCTGGAGGTCGACGCTGGACGGCACGACGTCCACCCCGGCGAACAGCGTGGGATAGGTGGCCTCCGCGAGGGTGCAGTCCTCGAAGAACACCGACCGCAGGGAGTGCCGCTCACTGCCCTCCGGGTACTGCGGGAGCAGCCACGCCGACAACGCGGCCTCCTGGTGGTCGGCGTCGATCACGCGGACCCGGTGGCCGGCCGCCGCCCACGCGGCCGCCAGCTCCACGGTCGTCGTCGTCTTCCCGGCCCCGCCCTTCTGGTTCACCACGACGAACACCCGGGGCGCGGACGCCTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4166-3160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054922.1 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4165 29 79.3 32 TCGGA........G............... GCCCACCAGGAGTACGAGTACCGCGGCATCCG G [4157] 4103 29 100.0 32 ............................. CTGATCACGGTCCGCAAGGCGCGGACTCAGGC 4042 29 100.0 32 ............................. CTCCGTGCCACCCGCGTGAATTACGCGAAGAA 3981 29 96.6 32 ..........................T.. CGGGCCACCGTGCACTCCAGCATCTGCCGCAC 3920 29 100.0 32 ............................. GAAACGTGGGTTTGTTTCGACGAGACCCACCT 3859 29 100.0 32 ............................. CTCTGCTACGCGAGGGTGGGGACCTATCGGTG 3798 29 100.0 32 ............................. TCCGGGATGGGTTCGGCTGTGGGCGGCGGAAC 3737 29 100.0 32 ............................. GTCATGGGTGAACTGCCGCCCATCAGTGAGAA 3676 29 100.0 32 ............................. ATCGCTTTCCTGCCGGCGCAGGGCGACTCCCT 3615 29 100.0 32 ............................. TGGTAGACCCCGTCCGTATCCTTGACACACTC 3554 29 100.0 32 ............................. TCCAACGGCCACATCACCACTCTCGGGCAGCA 3493 29 96.6 32 ................T............ CAGGTCGGCCGGTGGATCCCGCGGGGCATCGG 3432 29 96.6 32 .........A................... CTGGACCAGCTTCCTGCAGACCAGCGTGACCG 3371 29 100.0 32 ............................. TCCGCCGGCACCTGCGCGTGCCCCCGGCCGTG 3310 29 100.0 32 ............................. ACGCCGTGGACGGTGTACTGCCCCGGGTCGTG 3249 29 96.6 32 ........A.................... AAGAAGGTCGACTCGCCCGATTACGTGAGAAG 3188 29 93.1 0 .......T.............A....... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CGTCATCGCGCTCGAAGCCCTGATGGCCAGCCCCAACGACAAGCACGAGGGAATCAGTAAAAAAATCCAGACCCGCACAGCTGCCCTATTCCCCACCCCACGCATGCGCGGACTCGTGCAGAACGCAGTGCAGAAGGCCTACAGCACGCGCTCTAAGTACGTACACGGAGACCTGCTCATAGAGCAAGAAGAGAGTGAGAAACTGGCCGAACTACGCGAACTCAGGTTGATCGTGCGACAGGCAGTTCTTCGCTGGCTCATTCTCACTCCTAGTGACACGGAAGACCTTGCACCTCGTCTTGATGCCGCAGCCGACTGCGCCAGCTGCAAACGTGCTATCGATGAGCCACTGCGCGCGTTCTTTCAGGATGCGCCGTCACGGGACGGCATCCAATCCTGAGACAGCACTGGCTCCGTGACCGAGGCTGACGGACGCAACACCACTCCCCGGCACTGGACGCGGGAGGCTTCGGTGGACGGCGTCGACAGAGGAGCACCCA # Right flank : ACGAACGTCGAATCGAGGGGCGGCGACGGTGTGTCCTCCTCTCCCCCCCGATGGCCTCAAATGCCTACCTACGCCGATGCCCAGTCGAGTCCGAGGGCGGCGAGGGCGGCGAGTTTGTCGGCGTCCAGCTTGGCGCGCCTGCTCTTGGTGTTGGACAGGAACACCCCGAGGCGGACCTCTGTCCCGTCTTCCAGCCGTTCTGTGTGGCTTCGGCTGACGGTGAGGGAGCCGGTGCGGGCCTTGTACTGCGCCAGCGCCGCTACGCCCCGCTCGAAGGCCGCTGAGCGGCCCCCAGACGGCCCCTTCCCCGCCGTCGCGTCTCCTGCCCCGGCCTGTGCCGGAACGGGCCGCACAGCAGGCTCCACGCCCATCCCGGCGAGCCGCTCCCGCTGGCCCTCGCTCAGCAGCGCCCAGTCCTGGCGCTGGGTGGCCAGCCACCGGCCGACGTCCATCCCGTGCACCACCGTCCCCGGCTCCACCGACCGGAGCCGCCCGTCCTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 6732-6067 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054922.1 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 6731 29 79.3 32 A.....T.....AG.....A....G.... GAGACTGCGCACATGAGCCGCCGTCGGCCGCC 6670 29 93.1 32 .C...T....................... CAGCTCAAGCGCCTCGCCGAGGAGGGCCGCCT 6609 29 89.7 60 .........A....G..A........... GACCAGTTCGACGCGGAGAAGCGCCTGCTGGAGTGGCGCCAGGATCACCACGGGGGAGGA 6520 29 86.2 32 .A.....G......T...........T.. GCGGACGGCGAGCTGGATTGGGAGCCGTTGAC 6459 29 93.1 32 .................C.A......... CCCGCCACATACGCGAGCACTACAAGCCCGGC 6398 29 100.0 32 ............................. GCACTCGGGTGGGCCGTCGGCAGCTGCGTCGT 6337 29 100.0 32 ............................. CTCGACCAGGACGACGCCGACTCCCCCTACGG 6276 29 96.6 32 C............................ TCGCGGCCGACGTGGTCGCCGGCCCACAGGCG 6215 29 96.6 32 ...........T................. CACGACGAGAAGGTCGCCCACCAGCAGCGGAT 6154 29 100.0 32 ............................. CCGTCGACCGAGGAGGCCCGCGAGCTCCTCGA 6093 27 86.2 0 ........-............-.....GC | ========== ====== ====== ====== ============================= ============================================================ ================== 11 29 92.8 35 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : GCCACGCCGACGTCAAAGACCTCACCCCGGTGTTCAACGCCCTCCAAAAGGGCCTAGCCGTCCGCTACCGCATCGTCGTCAACCCCGTCAAAACCGAACGCCTGCCACTGGAGAACAAGGGCCAGCGCGGCAAACGCATCGCGCTCACCGGACCGGACGCCGACCAGTGGTGGGGACGCCGCGCCCACGAGGCCGGCCTGCACCTGGCCACAGCGCTGCCCACCCCAGTCGCTGCTGTACATGGCCGCAGCGACAACACCGCCGCCATGCGGCATCACCTGGTGCGCTACGACGGCATCGCCACCGTCACCGACCCTGACGCGCTCGCCGAGGCTGTACTGGTTGGCGTCGGACGCGCCAAGTCTTACGGCGCCGGCCTGCTCAGCGTCGCCCGTGCAGTCGCATAAGCCCACTTTCCGACGGCGGCCTGGCTCACGAGATCCTGGCTGCTGATACAGGGTTGTTCCGTAGATGGGCACGATCGGACTGAACACCATGTG # Right flank : CTGCCGGTGGTGGTCGAGTCCCACCCGACGGCCGCAACGTCCTGATCATCAGCCTGACCGGCCTCGAAGAGGCCTACGGCGCGGTCCTCGTGATCGTGCTCCACGACAGCGGCCGCTACCCCGACACCGCCATGTCCGTCGTCATCGGCGACCCGCTCCCCTGCACCGCCGTCGCCGTCAACACCGTCCAGCTGCGCCTCGACCGATTCGACGGCGCCAAGCTCCTCGGCCCGTCGATGCCGCGTCATGGCCTGCGTGGACGCCTCCCTGCGCGCCGTTCAGGACCTGTAGGCGCAACCAGCACCGGGCGCCCGCACTTTCTCCGAGCTCATGCGACTGCTGCTGCTCGACGTATTGGGGTCTGACAGGCGGCGCTGCGTTAGCTTCGTGCCCTATGGAAGACACCTCACCCTTCGGGCTGCGTCAAGCTGTCCTCGCCTGGCTTGAGCAGGCCCGCGACTTGCACTCGATACCTCAGAATCTCACTGATGCAGCGCTCG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 15412-20950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054922.1 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 15412 28 82.1 32 .C.C.............AC......C.. GTTGTCCCAGCCCGCTTGACCCGGTGGCCGCC 15472 28 89.3 33 ...C.........C..T........... GTCCGCCGAGTATGAGAGTGACCGGATCGGCGA GC [15485] 15535 27 78.6 34 A..C....G.............-CG... CGGTTCGCCAGCGACAGGGCGCCATGCGCGACCA 15596 28 85.7 33 ...C..TT................G... GGAGCTGGCGCCGCTCAAGGACGAGCTGTCCGA 15657 28 78.6 33 CC.C...T....AG.............. GTCGTCAAGCCAGTGCAGGACGTAGGCCCCGTC 15718 27 78.6 92 ...A.....T.............-C.AG GGGCCTTCTGCACGTCGGTCGGGATCGCCAGGCCCTTACCGGTGACGCGAGGGTGCTCCAGCGACTTCTTCAGGTTGCCGGGTGTGGAGGAC T [15738] 15838 28 92.9 33 ...G....................C... GGCGTCGGTGACCAGGTTCCAGACCTTGCGGAC 15899 28 89.3 33 ...C..G..............A...... GCCGTCGCAGCGGACAGGTCCGTCGGGATGCAG 15960 28 100.0 84 ............................ GGTAGTGGGGGGGGTGGTAACTACACCTCGCAGGCGTCTTCCCGCCGGCACGGGGGTGTTCCGCCGGAAGGAGCCCAACGCCAC 16072 28 78.6 13 ...........A..........C.AGGA CGAGCCACTCCGG T [16092] Deletion [16113] 16114 28 92.9 33 .....T...A.................. GACCACGACCGCCAGGTCCGCCACGGTGGCGCC 16175 28 100.0 34 ............................ GTGGGCACCGACCCTGATCACTTCCGGCCTGGTC 16237 27 89.3 33 ...C..............C.....-... GATCCCGGGGAACTGGACGAGGACGCGGTGGCC 16297 27 92.9 33 ...C.-...................... GGCCCGTCGTCGCAGACCACGCTCGGTGCGCTC 16357 28 96.4 33 .................A.......... GCCGTTGGCCCCGTTGCCGATGGCCTGGCAGTC 16418 28 100.0 33 ............................ GACCGATCAGGGCAAGGGAGCGTAGAGGGGGCG 16479 28 92.9 33 .G......T................... GTCCGTGCACGAGCCAGAGCGCTTTGGCCGCGA 16540 28 92.9 33 ................G.......C... TTGGCGGGTCGCTTCACGGTGTTCCCCTCAGCC 16601 28 92.9 34 .....T..................C... GCAGACGGTGGTCAGCGTCAGACTGCCTGTACGG 16663 26 89.3 33 ...C.--..................... GTACATCGGCGTCCCATACGTGTGGGGAGGCAC 16722 28 92.9 87 ...C....................C... CGCGCCTCGGGCTTGGCCCTCTTCGCGGCGGGCCTCCTCTCCGCCGACGCGGGGTGTTCCGTCGACGGGGGCATGGGCGCGGCCGGT 16837 28 85.7 34 ......................C.G.GT TCCGCATCCGCTCCGCCAGGCGCCGCGCTGCTCC 16899 28 82.1 33 .G.C...T............A...C... GGCGCCCTGGCTGATGATGGCCCGAGTGGGTGG 16960 28 89.3 33 ...C..G..........C.......... GGAGGGGGCGTCGTGGCTGGGCGACACCCTTGA 17021 28 92.9 33 ...C...T.................... ATTGATCCCCGAGGCCGTGTCCGTGGTCATCGC 17082 28 89.3 34 ...C.....T..A............... GGTCACCGGGGCGCCCCACCCTTCGGGAGGACAG 17144 28 92.9 46 ...C....................C... GCTGTCGCCTAAGGGGGCGAGATAGTTGGGGCTGGCCGGGGTCGAG 17218 28 89.3 33 .C.C..............A......... GGTCTCGGCGCCCTCGTCGTTGAACGCACGGAT G,A,G [17221,17223,17227] 17282 28 82.1 34 .C.C.A.......G.....C........ GTTGCAGATGGTGGTGAGCTGGTGCGTGCCCGAG 17344 26 82.1 34 ...C.....A.......-..A.-..... CGTAGCTGGTCGGCAGTACGTTGATCGGGTCGAT A [17369] 17405 28 96.4 34 ....................A....... GGCCCGGCCGGGCGCGTGGCGCCCTTCCCTGAAC 17467 28 96.4 33 ...C........................ GGCGTAGTTCTTGGCCTGCCCGCCGGGTGTCGT 17528 28 89.3 33 ...C.........CT............. GTCGGTGATCGGCCACCTGGAGTGGCAGCCGGG 17589 28 92.9 46 ...C....................C... GCTGTCGCCTAAGGGGGCGAGATAGTTGGGGCTGGCCGGGGTCGAG 17663 28 89.3 33 .C.C..............A......... GGTCTCGGCGCCCTCGTCGTTGAACGCACGGAT G,A,G [17666,17668,17672] 17727 28 82.1 34 .C.C.A.......G.....C........ GTTGCAGATGGTGGTGAGCTGGTGCGTGCCCGAG 17789 28 96.4 33 ...C........................ GCTGCACCGGGTCGGGTGGCCGTCCTGCTTGAT 17850 28 92.9 33 ...C.....A.................. GACGGACGGCACGATCAAGGAGGAGGGCGACTC 17911 28 92.9 34 ...A...T.................... GTGGGCACCGACCCTGATCACTTCCGGCCTGGTC 17973 28 89.3 27 ...C.........C..........C... GCGGGTGCGGGCGCGGCAGCGTGAGGC 18028 28 100.0 33 ............................ GGCCCCGGGCCAGTAGGCGCGGGGCGTGCGGGA 18089 28 96.4 33 .....T...................... GGGCATCGCAGCCGAGGAACCCGAGATGTTCGG 18150 28 96.4 33 ...C........................ GCTGGAGCCGGCCCGGGACCGCCGGTCGGTGCT 18211 28 100.0 33 ............................ GGCCCCGGGCCAGTAGGCGCGGGGCGTGCGGGA 18272 28 96.4 33 .....T...................... GGAGCCGTCGACGTGGACGAGCGTAGAGACCCC 18333 28 96.4 33 ...........................T GCCGTCGATGCGGTAGGGCTCGATCAGGTTCCA 18394 28 96.4 33 ...............A............ GCTGGTCCACGATCCGGGGGCCGGGGCACGAGG 18455 28 89.3 32 ...C..........T.........C... GCAGCTCGTGCAGGCGTGCACGCGGCCGACTA 18515 28 92.9 33 ..............T.........C... GCGCCGCGACTGCCACTGGGCGTACGAGCTCAC 18576 28 85.7 33 .A......T.....T.........C... GGTGCCGGTGGGGATCTCCTCGGCCATGAGCCG 18637 28 82.1 33 .C...A...........TC.....C... GGACCTGGAGCGGCGCACGAAGGTTCCGCTGGA 18698 28 89.3 33 ...........TA..T............ GACGCTGAAGCGGATCGAGGCCGGGCTGAAGAG 18759 28 100.0 33 ............................ GGCGCAGCCCGCATCCGTCGAGATGCTCGCATG 18820 28 92.9 33 .......T..........A......... GGAGGGCCGCCACGGCCCGACGACTGCGGCGCA 18881 27 89.3 33 ...C....................-.T. CGATCAGACAGGAAGGTGCCCGTGACCGACGCT 18941 28 75.0 32 .C.C..T...........AA....C.T. GACGAGGAGAATCTCCCCTCGTACCGTTCGCC T [18943] 19002 28 78.6 33 .C.G..T....T.......A....C... GTTGTGAATCTCGTCGACGAGGAGGTAGTCGAT 19063 27 82.1 33 ...G..G-.......T......C..... GTGGCCCGCCTCCGACAGGGTACGGACACGAGC 19123 28 78.6 30 ...C..G..T......T...A....C.. GTTCCTGGTGGACACCAGCGACCCGGACAA 19181 26 82.1 33 CG.C..................-.-... GTCCCCGGCTGCGTCGATCAGGTTCGCCCAGTC 19240 27 89.3 33 .........A.......-......C... GGCGGGGTTGCCCTTGAAGGTGCCGTTCATGGC 19300 28 100.0 33 ............................ GTAGCCCTCGGCGTCTTCCGGACCGAGCGAGAA 19361 28 96.4 33 ........................C... GTCCGGGGGACGGTCGCGATCTGGCAGGCCCAC 19422 27 85.7 33 .....................TGT-... GTTCGCGAACTGGTCCTGGGTGAGGAGCTTCCC C [19442] 19483 28 89.3 33 .....................T.TC... CTCGCCTCGGTCTTGGCCCTCCTCGCGGCGGGG 19544 28 89.3 27 C..C..T..................... GTCAACGGGGGCATGGGCGCGGCCGGT 19599 28 100.0 33 ............................ GACCCCCGCCTCCAAGAAGCAGGAGAGCTTGCT 19660 28 96.4 33 ...C........................ GCTTCTGCAGTACGACCTCGCCGCTGTCCTGGT 19721 28 96.4 33 ...C........................ GGTCATCGAGGCCAAGAAGAAGACGTTCCAGGA 19782 28 96.4 33 ...C........................ GTCGTTGGGGGCGTAGACGGAGAGCTTCTCGCC 19843 28 96.4 33 ...C........................ GCCGGGCGAGAGTGATCCTCCCAAGACCCCTCC 19904 28 96.4 33 ...C........................ GTTCTTGATGGTGCTGCAGGTGTTGATGCCCCG 19965 28 96.4 33 ...C........................ GTAGAAGACGTCGGCGGCGACGTTGGCGCGTCC 20026 28 96.4 33 ...C........................ GGTTCGGGAGTCGCTGCACCTCATGGGTGCGGA 20087 28 92.9 33 ...C....................G... GTTCTCACTCAACCAGTTCGGGGAGTTGACCCT 20148 28 92.9 33 .............C...........G.. GCAGACGCGGGTGGCGAGGATGAGCCACTCCGG 20209 28 85.7 33 .C.............A...A..G..... GGTGCCTTCCTTCAGGCCGGTCGCGGTGAGGAG 20270 28 92.9 33 ............AT.............. AAGCTGAACCATCTCCTCTTCGCCCTTGGCTCG 20331 28 96.4 33 ........................C... GCCAGAAGGAGCGGGACGCCGGCGCAACGCCAC 20392 28 78.6 12 ...........A..........C.AGGA TGAGCCAATCCG T [20412] Deletion [20432] 20434 28 96.4 33 .....T...................... GAGGCACGTGATGGGGTGGTCCAGCCGTTCGGC 20495 28 96.4 33 ...C........................ GATGATCCACGCCCCGCACACCGGCGCACTGGT G [20517] 20557 28 96.4 33 ..............G............. GCCGCAGCCCGAACAGCGGACGCGGACGCACTC 20618 28 100.0 33 ............................ GACCCTTTACGGCGCACCGCTTTTCGTGTCTTT 20679 28 100.0 33 ............................ GACGGACGGCACGATCAAGGAGGAGCGCGACTC 20740 28 92.9 32 ...A...T.................... AGTGGGCGCCGCCGTCGTCAAGAGCATGACCC 20801 28 96.4 33 ...C........................ AGTGGGCGCCGCCGTCGTCGAGAGCATGACCCG 20862 28 92.9 33 ...C....................C... GGCGCCCTGGCTGATGATGGCCCGAGTGGGCGG 20923 28 89.3 0 ...C..G........T............ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 89 28 91.2 35 GTCTTCCCCGCCGACGCGGGGGTGTTCC # Left flank : TTCACCTCGTTGAAGGCCAGGCGGATAATTCCCTCAACCACCGCCACACCAACGGGTTTCCGCCGTAGAGTACATACCGCTGCACGCCTTCCTGGGAGGTGCGCGGAACCTCATTGACTCACCAAAGCGACGGCAACGCCGAGCAGAACGCACGACCCTCTCGAGGGATGAGCGTCACCTCGGCCCAGTCTGCGCTCTGGAGATGCAATGTCCCGGTTCCTGCACAAGTTCGTCCTGCGCCGCGAGGTACTCCTCGAGACCTCACGCGTAGTGATCAGCGCGGCAATCCGCGCCCTGATCACCGAACTCGTCAGCTGGCTCATCTGAGCCAACGGTGACGGACCCCAAAGGGGTCCGTCACCCCCCATTTGCACACAACCCCCCACTGGCTGAACACGTCTCCTCACTACTGGATACACCACAGGACGAGATGCCCGGCTACCAGCGGATACCGCCGACACCGCGAACAGAGAAACCCCCGCCACCGCAAGACCCGCCCG # Right flank : CGGGCGATGGCTGATGCTGGATCACGTTGGACACGTCCTCCCCGCTGAGCAGGGGGAACAAGCCAGGTCAGGCAGGTCGCCAGGCCGCGCTCAAGGGCTTTGGCGAGCTCGATGCGCCACTCACCGTCCGCAGCCTGACGCGATGCGGACGGGCGCCCAGACGGCTCCGTTTGCGTGTCGACGGCACCCGCTGGACCTGCATTTATGCATCCTGGGCCGCTGCGGGTGCATAAATACCAAGATCACTGACCATGGGAGGTCGGTTTTCGGAAAAAGGTTTGAAAACCAGGCCGTTTACCCGTGCAGGCCCGACGAAAGTGTCCGATCAGTCCCCAAACGTGCTGCAGATGGGGGCATTTGACCGAATGGCGTTGCGCAGAGGGTGTCACTACTGTCACGGAGCGCGAACCCGCGCTTTCCAGGACCCGGGTTCGCGCTCCACAGCAACTCGATCAAGGAGAAGCCTTTGTCTAAGTCCCCCGTCGAGCGCGGGATCAAAC # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //