Array 1 64299-66113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWN010000010.1 Listeria grandensis strain FSL L7-0741 NODE_10_length_114209_cov_19.525602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 64299 30 100.0 35 .............................. ATTGAACAAGTCGACAATGTCATCGAAAAAGCTGT 64364 30 100.0 35 .............................. AGGCTTACATTTTTCCCACGCGTACTGCATCGATA 64429 30 100.0 37 .............................. GCTTATCAGTACTTTTGTGGTAGGAGCCTCGGGTTCA 64496 30 100.0 41 .............................. GCGGGCGCGACCGTGTTTTTTGTGACGGCTTTTGTGAGTAG 64567 30 100.0 36 .............................. ACCTCGTGCGCTCTTAAGCCAGCTAAATAATTCGTT 64633 30 100.0 35 .............................. TTTACAAGACCTTGTGTCAAAGTTTCGTGTAATGC 64698 30 100.0 34 .............................. TTTGTTTGACCGTAATCTGTAAATCGAATTCCGC 64762 30 100.0 37 .............................. ACTCAAAGCCTTACTCAAGCACATTGAAACCGGGTTA 64829 30 100.0 36 .............................. AGCATCACAACCCTGTCTGGCACTCCGCGAGTTCCG 64895 30 100.0 35 .............................. ATTCTTAGATGTAGACGGACTAACTCCAGAGGACA 64960 30 100.0 36 .............................. AAAACAATTCCGTTATCTTAACGAAAAAAATGCAGA 65026 30 100.0 37 .............................. TTCGGCATCTGTAACTTTTGTGATATCATGCGCTGTC 65093 30 100.0 37 .............................. GTAGTAAGAGGCGATGTCTTCGAGATAAGGTCTTTCC 65160 30 100.0 38 .............................. CCGAATAAGCAGCTGTCTGTTCTTCTTTGAGTAATAAA 65228 30 100.0 36 .............................. ACGAAAAAGAAACTTTTGGAATCTCTAGGTTTGGAA 65294 30 100.0 36 .............................. ATAATACCTGACCGTTTTCATAACGCAAATAAAGCT 65360 30 100.0 34 .............................. TTCTTTTATTGCGCCAATCTCTCCGCCACTTTTA 65424 30 100.0 36 .............................. TCGGAAATATCCCAACCGCCCGAACTACTGTATGTA 65490 30 100.0 37 .............................. AATTTCAACGGGCTAACCTTCGTCGCTAATCACGCTC 65557 30 100.0 34 .............................. CATAATAGCTTTTTGATGGTCCATCCCCATTATG 65621 30 100.0 36 .............................. GTTGCTTGAGCTACTGATGTTGTCGTATCTAAAACT 65687 30 100.0 35 .............................. CTGTATCGTCCGTATGAATATTTCCTGTATTTATT 65752 30 100.0 36 .............................. CGATCTTGGTCTCTCCCCTACGCTCTTAACTAATAA 65818 30 100.0 36 .............................. AATAATAAAACAGTGACTCTTAAAGATAACATGGCG 65884 30 100.0 34 .............................. CTCATCGCTAACTAGGCAGAGTTGATTACTTTTT 65948 30 96.7 37 .....................G........ ATTGCATATTGTTCAGCCTCGTTGCGAGCCGCTTCAA 66015 30 100.0 35 .............................. TAGCTTGAAAAAACTTCTTTAGCGATTACATAAAC 66080 30 90.0 0 .................A.T....A..... | C,C,G,C [66099,66105,66108,66111] ========== ====== ====== ====== ============================== ========================================= ================== 28 30 99.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGATTTGGTGGTGAATGGCGATGTATATTATCTTGATTTACGATATAACACAGGACAATGGTGGCGCAAAAGTATCGCGAAACATTTTTAAAATCTGTAAAAAATACTTAACGCATGTTCAAAAATCAGTTTTTGAGGGGGAAATCACGCCACCGTTGTTAGTGAAATTACGGATGGAGTTAGATCAATACATTCGTGAGGAAGAAGATTCGGTGATTGTGTTCTCTAGTAGGCAGGAAAGATGGTTGGAGAAGGAGTTTTGGGGAGCAGCAGATGAAAAAACGTCGAACTTTTTCTAAGGGGTGAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACACTGGGGGATCGACAGATTTTGATAAAGTGTTGGGGTAGAATGGGTTTCGCGATTTAGAGGGGAAAGGTAGGATGAATTTGTAGTGCGAAATTTGTTTTTTGGTGGAGGTCGACAGATTAGGTGTCTTGAGGTATGATGGGAGTAAGCTCGAAATAGCACGG # Right flank : TGTGGCAGGATTCGCTTTAAACCTGCGTTTTCTCCAAGCAATATGAAAAACGAGTGAAACATAAGCAATCAAAAACCACCCAGCCAAGACATACAGTGTCTCTTAGCCAGGTGGTTTTTCTCGTGTCCCGTCTCCCGCTTTTTAGTCGCGTAGAGCTTTGCCTAAATATAGACCACTGCAAGCTGCGTGTGACAGTGAGTGCGTGACTCCGGAGCAATCACCAATAAAGAACAGGTTAGGAACGTCAGATTCGAATGAAATATCGGTATGGATTTCTGGCCCTAATTCTTTCGTATCATAGCAATATAATAATGTGTTTCCATCTATTTTAGACTGTGAAATCTGCTCTAAGCAATGAAAAAAAGCAATCGTTTCTTTTAATAAATCATCCAAAATTATGTCGGCGGCAAAATCTGATTCGTACGGCAAGGTCCCCTCGATTTTCTTTCTGGGTTTAAATTCGGAAGATAGGGAGTGAAGGGGGTAGCCAATGATTCTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 75068-75422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWN010000016.1 Listeria grandensis strain FSL L7-0741 NODE_16_length_78169_cov_18.363392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 75068 29 100.0 36 ............................. TACAAATCGGACAATGGAGATGTTCTTGATGAAAAT 75133 29 100.0 35 ............................. CCCGTTTTAAGTACGAGGGCAACACCTTTACCATT 75197 29 100.0 36 ............................. TCAACAGCGACGTTGGTCGCGGTCGGGTTGTGGAAC 75262 29 100.0 37 ............................. AATACATTTTGAGCGATATCATAATCAACCTTTTTCA 75328 29 100.0 37 ............................. GTATTACGGTTGCTGAGTGGCTGAACATTTGGTTTGA 75394 29 86.2 0 ..............A....A.......GA | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 97.7 36 GTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : GGTAAATGGGCTGGTATGTGTGGCGAGATGGCTGGCGATCAAACAGCTGTACCGTTGTTGCTTGGGATGGGCTTAGATGAGTTCTCTATGAGCGCGTCAAGCATCCTGAAATCACGTTCTCTAATCAAGCGCTTAGATCGTACAGAGATGGCGAAATTAGCAGACGAAGCATTACAACAAGCAACAGAAGAAGAAGTTGTAGCGCTAGTTAACAAATATACTGCTGAGTAATCAGAGTAATAGAATGAGTGAAGAAAAACCTGGGAGATTCCTCAGGTTTTTCTTTTTAGTATAAGACCTGTTGAGAAAATCTGTCGACCTCCAGTAGCGTAAAAACTACAGGAGATCGACAGATTTTTGTTAATGACTGGTACAACAGCGATTAGGCTCTTTTCATAAAATATTTTTGTAAAATCAAGCGCTAGAAATCCCGATTTTGTCATCGGTCGACAGATTAGCCCCTTTGAGGTATGATGGGAGTAGGGCTGAAATGGGTACGG # Right flank : AGGATGCTTCAAATAATTATCTGGAATATATAGAAGTTTCATCCAATGAATCCAGAAAATAAATGCGCCTTCAAAATCCGCGACTACTCCAATTTGCATTTTCTTGTAACCACGGGTAAACTTTGTTCTATAGACAAGTGACCAGTCGAAGGAGGAGTTTTGGAATGAATAAAATTGGATTTATCGGTGTTGGTGTGATGGGTGCGAGTATGGTGCAGAATTTGATGAAAGCGGGTTTCGAAGTACATATTTATACGCGGACGAAATCGAAGGCGGGTGCTGTTATCGAAGCTGGTGCAATCTGGCATGATACGCCGCAAGAGCTAGCGCCGCATGTGGACGTACTAATTACGATGGTTGGCTATCCGACAGATGTGGAGCAGCTTTACTTGGCTGAAGACGGGCTTTTAACCACGCTTCGCTCAGGGAGTTTTGCGATAGATATGACGACCTCTTCTCCAAACCTTGCGAAGCAGATCGCAGAAGAGGCGAAGGAAGCG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 80686-81233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWN010000009.1 Listeria grandensis strain FSL L7-0741 NODE_9_length_123107_cov_16.441088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 80686 29 100.0 36 ............................. CCAACAAATCCGCCGATATCCTTTATCTTGGCTTGC 80751 29 100.0 37 ............................. GCACTATATGCTACTAAAATTGAAAAAATATATTTCA 80817 29 100.0 36 ............................. AAAACTTCTACAGCTATTGAAACGGCTTCTTGATCG 80882 29 100.0 36 ............................. AACGTTGATGCCGGGATTCCTTTCCCAGGTCTTTTA 80947 29 100.0 36 ............................. ATTGTTACAAATGCAAAAGGTGGGCAGTCTAACCAC 81012 29 100.0 36 ............................. GCAACTTGCTCATGTCGATGTAAATGAGCGCACCAG 81077 29 100.0 34 ............................. CTTATTATCGGGAACGTAATGCACAAAGGAATTG 81140 29 100.0 36 ............................. TAGTACAAGCTATTCTGACCTTGAAATAACTCTGGG 81205 29 93.1 0 ................C..T......... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 36 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CCTCGTTGAAGTTCCCAATTCCGAGAAGATTTGGGATGCCGACATCGTGCTAATCGCAATTGGATTCGCCGGTGCGACCCCATCCATTTTCAAAGATTTCAAAGTGGCCAAAACAAACCGCCACACCATCGAGGCCGCCAAAGGATTTTACCGTACCGACGTCGAAGGCATCTTCGCATGCGGCGACGCAAGATATGGCCAAAGTCTCGTCGTAACCGCGATCAACGAAGGACGCGAAGCCGCCCGAGAAGTCGATTTCTACCTAATGGGCGAAACATTCCTACCATAAAAAAACAAGAAGGCTCAAAAATCTGTCGACCCCCAGTAGCGCAAAAACTACCGGCGATCGACAGATTTTCTTTATTGGTTGGTATGACTAGGATTAGACCGGTTTTGCAAAGAACGAGAGCAAGGTTAAGCTAACGAAAAAAACGATTTTGTTGTCGATCGACAGATTAGGGCTCTTGAGGTATGATGGGAGTAGGGCTAAAAAGGCACGG # Right flank : TCCTATACGAGTTAGCAGAAGGTATAGGCTCTACCATTACGCTTTCTTAGCTATCGGGTTCATTCATTGTAAACAGCTGATACTATAACATAAAAATAAGAATAAAATACCTATAATCTTTTTGTTGCGTTTTCCGCAAGTATTGTGTAGTCTAAGAAAGGAAGCAAAATAGCATCAATTTGGTAATCTAAATGGTGGGATAGTTATCAAAAAAAATGCAAACATAGTCAAAGGTGGGATCGATATGAAAAAAGGGACGCCGGCTTGAACAGATCTATTTACAATCCTAATTTATAAAATAGTACTATTTTTCCTAGCGATCATCTCATGTATTATTTTTGTATTTTCAAGAAAAAAAGGTAAATAAAGTCATAAAAATTGGTACGAATCAATATAAAAATAATAGAATCCATAAAGGAATAAAATAGGCTCATCGAAATCTGTCGACCTCTAGTAGCGTAAAAACTACAGGAGATCGACAGATTTTGTTTAACGACTGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 81862-82278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWN010000009.1 Listeria grandensis strain FSL L7-0741 NODE_9_length_123107_cov_16.441088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 81862 29 100.0 35 ............................. AACAACAAATGGATTTCTTATTTAGAAATTCAGAG 81926 29 100.0 36 ............................. GAAGTAAACAGTGATTCTTTTCGTTTAATCGATTAT 81991 29 100.0 37 ............................. TTTTCAATATCCGTACTTAATTTATCTTTTAGATAGG 82057 29 100.0 35 ............................. GCAAAAGGGCTATTGCAATACATTCCGCAAACTTT 82121 29 100.0 36 ............................. CTAAATAACGACCGTAAACGTGAGGAATTTGTAAGG 82186 29 100.0 35 ............................. TTTCGATTGTACGCAATGATTTTGGAGTGATTAGG 82250 29 72.4 0 ............C.A.T.A.G..CC.G.. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.1 36 GTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : TTTTCCGCAAGTATTGTGTAGTCTAAGAAAGGAAGCAAAATAGCATCAATTTGGTAATCTAAATGGTGGGATAGTTATCAAAAAAAATGCAAACATAGTCAAAGGTGGGATCGATATGAAAAAAGGGACGCCGGCTTGAACAGATCTATTTACAATCCTAATTTATAAAATAGTACTATTTTTCCTAGCGATCATCTCATGTATTATTTTTGTATTTTCAAGAAAAAAAGGTAAATAAAGTCATAAAAATTGGTACGAATCAATATAAAAATAATAGAATCCATAAAGGAATAAAATAGGCTCATCGAAATCTGTCGACCTCTAGTAGCGTAAAAACTACAGGAGATCGACAGATTTTGTTTAACGACTGGTATAAATGAGGTTAGGAAGGTTTTTTCGAATATTTCTACAGACTGAGACTCTAAAAATTATGGTTTTGTTGTCGATCGACAGATTAGCCCCTTTGAGGTATGATGGGAGTAGGGCTGAAATGGGTACGG # Right flank : TATCCTCAAAACCGCGATTTTTCACAACAACAATCTTCATCAACCAAAATTCTGTCGCTCTCAGTAACTCAATCGTTACCGCAGAACGGCAGATTTTTTTATACCTGCTCTTCGCATAAAATTTGACTTGGAGTGCACTTCAATCTTTATACTGTTAGATAAAGGAGGAGGTAGGAATGACTGCTAGTAATGTGGCACAAGATAATCAGGATTACTTATTTCCAAATCAACAAATGAAACTAAGACTGACGGCGCTAATCATGAGGCAACGTGTGAGTGAATACAAAAGGATGCTAAACAAGGCGCTTCAGATCGGCATAAAACCGGAAGAGGTGAAAGAACTTATCTATCGGGCGGCACCACATATTGGTCTAGAGCGGGTTTTCGATTTTTCGCAAATAACAAATGATATACTGGTAGCACACGGTTTACTACGAGTGAGCCAGTGCACACTTGAGAATGGATATGGGGGAAAGTAAATTGAAGAAAACACTATATTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //