Array 1 119304-117443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFE01000002.1 Salmonella enterica subsp. enterica serovar Ohio strain 05-0106 NODE_2_length_509968_cov_3.87929, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119303 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 119242 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 119181 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 119120 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 119059 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 118998 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 118937 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 118876 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 118815 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 118754 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 118693 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 118632 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 118570 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 118509 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 118448 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 118387 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 118326 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 118265 29 100.0 32 ............................. GCCCCGCTGTTAAAACCGGTTATCGCTGCAAT 118204 29 100.0 32 ............................. ACCGCAAAGAGGCGCTGAATCATGAAAATCAG 118143 29 100.0 32 ............................. ATTTTATTGCCACTATTCCATTTCACCAACGG 118082 29 100.0 32 ............................. AAATCAAGGAGAGCGGCAACAAAGAGCCAGAA 118021 29 100.0 32 ............................. GATATCTATAACCATTAGCCCATGATTTAAGA 117960 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 117899 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 117838 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 117777 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 117716 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 117655 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 117594 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 117533 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 117472 29 96.6 0 ............T................ | A [117445] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136962-135590 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFE01000002.1 Salmonella enterica subsp. enterica serovar Ohio strain 05-0106 NODE_2_length_509968_cov_3.87929, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136961 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 136900 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 136839 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 136778 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 136717 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 136656 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 136595 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 136534 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 136473 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 136412 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 136351 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 136290 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 136229 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 136167 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 136106 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 136045 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 135984 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 135923 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 135862 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 135801 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 135740 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 135679 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 135618 28 93.1 0 ............T............-... | G [135598] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //