Array 1 1177-849 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWO01000009.1 Pasteurella multocida strain ATCC 51689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1176 28 100.0 32 ............................ TTCTGATGTCGCTTATTTTCTTGCTTTTTTTA 1116 28 100.0 32 ............................ ATCTTCTGATTGACCGTAAAAAACTTTTGTAC 1056 28 100.0 32 ............................ TAATGCACCTAGAGTTGATGTTAAAACTAAAA 996 28 100.0 32 ............................ TATGCCTTGGTCTTTTAAAGATAAGACGGGTA 936 28 100.0 32 ............................ ATGATGCCTTATACCAAGATGGCATGATTAAA 876 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAAACTGTTTTA # Right flank : ACACTAAAATTTCCACGTGAGCCTGATTTAACTGTTAACTGCCGTATAGGCAGCTTAGAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTAACTGCCGTATAGGCAGCTTAGAAAAAGACGGCAAACTCGCAATCCCGCCACGCAATGTTAACTGCCGTATAGGCAGCTTAGAAAACTTCTAAACTAGTCATTCTTCTAGTTCCTCTGTTAACTGCCGTATAGGCAGCTTAGAAAGTGATTGTACCGATAATTGCCGTGTTCATTTCGTTAACTGCCGTATAGGCAGCTTAGAAAACATTCTGGACAATTATCAAGATTCATACTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27469-28156 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWO01000005.1 Pasteurella multocida strain ATCC 51689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27469 28 100.0 32 ............................ TCGCTTCAAATTAACTATAGGACGAAATATGA 27529 28 100.0 32 ............................ TTTTTCATAAATTTGTTCATCGAGGAATTTCT 27589 28 100.0 32 ............................ GTTATGGAACGGTTGAATTCCAAGAACAATTT 27649 28 100.0 32 ............................ GAGCTACAAGAGCAGCTAATGGCACGCCGTAA 27709 28 100.0 32 ............................ TCGCTTCAAATTAACTATAGGACGAAATATGA 27769 28 100.0 32 ............................ TTTTTCATAAATTTGTTCATCGAGGAATTTCT 27829 28 100.0 32 ............................ GTTATGGAACGGTTGAATTCCAAGAACAATTT 27889 28 100.0 32 ............................ AAGCACTATGCCGAAAGCACCCCACCAGTCGT 27949 28 100.0 32 ............................ TATTTTTTCACTTTGGAAGCGTGCGACTTCTT 28009 28 100.0 32 ............................ GCAAGCTGAAATTGACAGTTTTTACAAGCAAG 28069 28 100.0 32 ............................ ACAATCAGCACACCTTTGGGATCAAACCACGC 28129 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGAGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGTGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-490 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWO01000004.1 Pasteurella multocida strain ATCC 51689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 32 ............................ TCTTCTGCTTTTACGTTTCCTTTTTCATCGTA 103 28 100.0 32 ............................ ATTCACCGTTGATGTTTTGCGGTCTGCCCTGA 163 28 100.0 32 ............................ GCCTTGGAGTTCTGTCAATAACTGTACGGAAC 223 28 100.0 32 ............................ GCACATCATACGAAGACAGAAAACCAAATCAG 283 28 100.0 33 ............................ CAACGGCAGAAGAAAATCGTCCGAAAGCATTAG 344 28 100.0 32 ............................ AGGTGCATCCACAATGACTTGATAACGTCTAT 404 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 464 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCTTAGAAACGTTTAAACAGCTAACGTTACAACACGGACTTG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCAGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //