Array 1 987995-990158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022116.1 Salmonella enterica subsp. enterica serovar Ouakam str. SA20034636 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 987995 29 100.0 32 ............................. AATACTCCCTGCTAAAGTTGGCCAAGTAGTCT 988056 29 100.0 32 ............................. GATCGAACCATCTTCACGATATTCCACAGGGG 988117 29 100.0 32 ............................. CCAACACCGCCAGTTTTACCAGCGCCGCCCGT 988178 29 96.6 32 .......T..................... CGCACACGCTGGGGCGTAACCAGGGGCAGGAA 988239 29 100.0 32 ............................. CGCACACGCTGGGGCGTAACCAGGGGCAGGAA 988300 29 100.0 32 ............................. GCCCGAAAGGCGAGCCTGCGCCAGCTTACGGC 988361 29 100.0 32 ............................. GCTGGTTCAGTTAATTATTAGTGAATTACGGG 988422 29 100.0 32 ............................. GCTACACCGGCAAAATGCTGCAAATGAAAGGC 988483 29 100.0 32 ............................. TCACGCGCCCCCTCCCCTTATTGGGTCGGGCA 988544 29 100.0 32 ............................. TTCCCGAAAGACAGCGCGGTTGCCCCGGCTCC 988605 29 100.0 32 ............................. AATGCGGAGTTGAGTCACTTTCCCCTTACTAT 988666 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 988727 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 988788 29 100.0 32 ............................. AACACGTTGCGTGGGAGAATCTCTGTCTGCCG 988849 29 100.0 32 ............................. TCGGCATCGTGTCACCGCCGGTGGATATGTCC 988910 29 100.0 32 ............................. CGCCTAGGAGAACTTGTGGGCTACTCCCAAGC 988971 29 100.0 32 ............................. ACCAGCGATCTTATTAGCACGACCAAATTTTT 989032 29 100.0 32 ............................. TGTTTCGTTATGATCGTTCAGATTACAGTCGC 989093 29 100.0 32 ............................. CAGGCCGATGAGTGGGAGGTTATTAACGCTCT 989154 29 100.0 32 ............................. AGATATATCCAATATTTAAAAATGAAAACAAT 989215 29 100.0 32 ............................. GCGATTGGCGGCGTTGGTTCATCGTTAAAATG 989276 29 100.0 32 ............................. GTTTCGGACAGATTAAAACAGTCCATTACTCG 989337 29 100.0 32 ............................. CGAAAATGCTTTGTATTGTCCATTGGCACACC 989398 29 100.0 32 ............................. GTCAACATGTATGTTGTTAACAATGAGTTGCT 989459 29 100.0 32 ............................. TTGCGGCTCGATTGAGTCCAAATCGCAACGAT 989520 29 100.0 32 ............................. GTCATGCGGTGAAAATCCTTCTGCTTTAATCA 989581 29 100.0 33 ............................. TTACCGCTAATCGCAAAGATAACAGCGGCCACA 989643 29 96.6 32 .C........................... GCCATCGACGGACAAGAAAACCCACCGGAAGA 989704 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCTGCCTGCTGAG 989765 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 989826 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 989887 29 96.6 32 .............T............... GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 989948 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 990009 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 990070 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 990131 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998900-1000881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022116.1 Salmonella enterica subsp. enterica serovar Ouakam str. SA20034636 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 998900 29 100.0 32 ............................. CGAAAATCATCGCCGCTAAGACGCTATTTCGC 998961 29 100.0 32 ............................. CTAGTACAGTAGAGAGTTCGGGTAAGGCGGTT 999022 29 100.0 32 ............................. ATGTGCTCAATGAGTATCTTGTTATCCCGTTC 999083 29 100.0 32 ............................. CGTATTCCACCCAGCCGCAGCATAGGCGACAC 999144 29 100.0 32 ............................. GTGATGAATTGCCATCCTTCAGAAAATTTGAA 999205 29 100.0 32 ............................. CTGGCCTTACCGCTGGCTGGAATTTTGGCATT 999266 29 100.0 32 ............................. AGGATCCGACGGGCGATGATGACCAGCCAGGC 999327 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 999388 29 100.0 32 ............................. GACTGTTTTCATATATCACCCCTTGCTCCAAA 999449 29 100.0 32 ............................. CAGCGCCCGCCGGTGTTGCGCTACCGCGTGTT 999510 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 999571 29 100.0 32 ............................. ACCTGCGTCGCGCAGCTCGCAGCGCAATTCGA 999632 29 100.0 32 ............................. CCATTGATGAGGCTATCGCAGCCGCACAACGG 999693 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 999754 29 100.0 32 ............................. GGGCAGCGCATCGATTTTGACGTGGAAACGTT 999815 29 100.0 32 ............................. CGACAATATGAACATGATGAGAACCCCGCCGA 999876 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 999937 29 100.0 32 ............................. TCTCGCCAGTGGCCTGAACCGAAAGACGGTGA 999998 29 100.0 32 ............................. CACATCACGGATGTGGTCTGCATTTTGAAATC 1000059 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 1000120 29 100.0 32 ............................. TTGACGCGGAGATATATTCATTCAATAAATCC 1000181 29 100.0 32 ............................. AACACAGTTCATACAGCCGACGCGTGACGCTC 1000242 29 100.0 32 ............................. CGTGCCCGCTGACAATACCGTGGGTGTAGGCC 1000303 29 100.0 32 ............................. TAAGAATAAACGGCTTTTTTCGACATTCCAGC 1000364 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 1000425 29 100.0 32 ............................. CGGAACTTGTAAAGGCGACGCAGGGTTTAACC 1000486 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 1000547 29 100.0 32 ............................. GACCAGATTAAAAAAACGGGCTGGACATGGGG 1000608 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1000669 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1000730 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 1000791 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000852 29 89.7 0 A........T..T................ | A [1000878] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATACTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTGTGGAACGATTCCCTCGTGTAGCAACTGCTGGTAAGTATCCAGCGCATCATCAACCGTGTTGCGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCTTTGGAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //