Array 1 21701-23802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWX010000006.1 Erwinia amylovora strain 214/07 Ea_214-07_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21701 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 21762 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 21823 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 21884 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 21945 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 22006 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 22067 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 22128 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 22189 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 22250 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 22311 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 22372 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22433 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22494 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22555 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22616 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 22677 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 22738 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 22799 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 22860 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 22921 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 22982 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 23043 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 23104 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 23165 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 23226 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 23287 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 23348 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 23409 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 23470 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 23531 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 23592 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 23653 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 23714 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 23775 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34710-36815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWX010000006.1 Erwinia amylovora strain 214/07 Ea_214-07_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34710 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 34771 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 34832 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 34893 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 34954 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 35015 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 35076 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 35138 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 35199 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 35260 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 35321 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 35382 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 35443 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 35504 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 35565 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 35626 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 35687 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 35748 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 35809 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 35871 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 35932 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 35993 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 36054 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 36115 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 36176 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 36238 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 36299 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 36360 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 36421 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 36482 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 36543 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 36604 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 36665 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 36726 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 36787 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46279-46607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWX010000006.1 Erwinia amylovora strain 214/07 Ea_214-07_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46279 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 46339 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 46399 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 46459 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 46519 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 46580 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //