Array 1 43816-45674 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHG01000011.1 Escherichia coli strain EC_82 NODE_11_length_163384_cov_42.448603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43816 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 43877 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 43938 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 43999 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44060 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44121 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44182 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 44243 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44304 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44365 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44426 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44487 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 44548 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44609 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 44670 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44731 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44792 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44853 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44914 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44975 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 45036 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 45097 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 45158 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45219 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45280 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45341 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45402 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45463 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45524 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45585 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45646 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61176-61876 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHG01000011.1 Escherichia coli strain EC_82 NODE_11_length_163384_cov_42.448603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61176 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 61237 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 61298 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 61359 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 61420 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 61481 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 61542 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 61603 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 61664 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 61726 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61787 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 61848 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //