Array 1 208827-209479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046528.1 Lactobacillus acetotolerans strain CN247 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 208827 36 100.0 30 .................................... TTTACACCTGCTAGAACTATTAATCCTAGT 208893 36 100.0 30 .................................... CCGTCCACACCTAACCCGTGCCAGTTATCA 208959 36 100.0 30 .................................... ATCTCACTTGGGTCTTTAGTCTTCTGCCCA 209025 36 100.0 30 .................................... GGCTGTCTAAGCCTTGTTGATAGGCTGCTT 209091 36 97.2 30 ..............T..................... AAAACGAGGCTTATTTAGAAGCCGAGGATC 209157 36 97.2 30 ..............T..................... AAAAGCTGCAAAAGCTGATACCTATGAAGG 209223 36 97.2 30 ..............T..................... TCCATACCTTTATTACGGAAGAATTTATAC 209289 36 94.4 52 .........T....T..................... TAAGCACTAAGATTACCTGTTGTACATCATGTTTTAGATGATTGTTAGATCA 209377 36 83.3 30 ...........T..T......A...GA.......A. CTCGAATAAATTGTCAAATTGTGTAGTAGT 209443 36 83.3 0 ............C......T..G.......C.G.T. | G [209467] ========== ====== ====== ====== ==================================== ==================================================== ================== 10 36 95.3 33 GTTTTAGATGTCTGCTAAAACGATGAGGTTTAAAGC # Left flank : ATTTGGTGGACAACAAGTATTTAAGGGTAAGCACTACACCAATTATGGTGTTGCAGCCGCTGCAGTTCGCTTAATTCAATCAATTCTTAATGATTCTAGAACTGAATTGCCAGTTTCAAGCTATCAAGCTAAATACGGTACTTATATGTCATATCCTTCAATTGTTGGTCGTGACGGTATTGTTCAATCAATTGACCTGCAATTAACCGATGAAGAAGAAAAACAATTAAAGGCTTCTGCTGAAACAATTAAAGCAAAGTCTGAAGCTTAATTAAGAATAATATTAAGTATATTTAGAAATAGATGGGTTTATAAAGCTCATCTATTTTGTTTATAAAAATTGATAAATACCTAGATTTCAAATACGTTTGTACTATATAATTTAAATAGTAATGGTTATAGCTTAACGATTATTTATAGTTAGTTGCTTGTTCTTAAGAAATTTCATTAAACTTATTTGATTGTGACAGTCTTTATTAAAAATTGATGATAAAATATCG # Right flank : CCCTCACACTCCGTATAAAGTATTTTATGTAATCAGGTAAATTTTTGTAATTTGTCAAAATTAATAGAGATTAAGTTAAATTATTGATGTATCATTAAATTTGTATTTGAAAGCGCTTAACTATTTTTGTGGAAAGGATCTTTTATGACTAAGGTAAAAGAAGACTATATTATCGGATTAGATATTGGTACTAACTCATGTGGATGGGTAGCTACTGATAAGAAAAATAATATTTTGCATTTACAAAATAAAACAGCAATAGGGTCCCATTTGTTTGAAGAAGGACATTCTGCAGCTGATCGTCGTCTTTTTAGAGGAACACGCCGCAGACTCAATAGAAGGAAATGGCGCTTAAAATTTTTAGAAGAAATTTTTGATCCGTATATTTCAAAAATTGATCCTTATTTTTTCGCTCGCATGAAAGAATCTGGGCTTTCACCTAAGGATTCAAGAAAAAAAGCACGTGCTATAATTTTTCCGACTCCAAAAGAAGATAGTGA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTCTGCTAAAACGATGAGGTTTAAAGC # Alternate repeat : GTTTTAGATGTCTGTTAAAACGATGAGGTTTAAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 215947-217039 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046528.1 Lactobacillus acetotolerans strain CN247 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 215947 36 100.0 30 .................................... ATTAAGCACAATGTTTATACACGAAAAGAA 216013 36 100.0 30 .................................... TAATTGCCTGTGAGAGTAAGACAGAGAGAT 216079 36 100.0 30 .................................... ATGCAGCAACTCGTAAAGCAAATATGCTTT 216145 36 100.0 30 .................................... CTAATTGAAGAGCATTATGAATCTGAGCTG 216211 36 100.0 30 .................................... CCGTTTCCGCTTGTGTTTTGTCATCTGGTG 216277 36 100.0 30 .................................... AATATCTCATTTGAACGCCATCAACTTTGA 216343 36 100.0 30 .................................... CCGTCCACATTTAAACCATGCCAATTATCA 216409 36 100.0 30 .................................... AACTTATCAAAAAAGGGAGGACGTACCCTA 216475 36 100.0 30 .................................... CACGCAGCACATCTTTTATAAACCCGTCAG 216541 36 100.0 30 .................................... TAACTTGACTGCCTTCAAAATCGAACATTT 216607 36 100.0 30 .................................... TAAGCTAGCTGCTAAAAACATGGGTACCGC 216673 36 100.0 30 .................................... ATTCTAGAAGGTGAAGCATGAAACTATGGA 216739 36 100.0 30 .................................... CTAATCCAGGCATGAAGATGTATCCACACG 216805 36 100.0 30 .................................... ATCAAGCACCTACTTTCATACCATGTGTAG 216871 36 100.0 30 .................................... GTTCTGGAGTTTCTCTAACGTATCCACGTT 216937 36 100.0 30 .................................... TTCCAAAAGAGCCAGTACACGTGCCAACCG 217003 36 77.8 0 ...................A....TC.A...G.CGA | A [217033] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.7 30 GTTTTAGATGTCTGTTAGATCAATGAGGTTTAGAAC # Left flank : AGCGGAGATATTATGACAAAATATATGTGTCATATAATTAAAAGTTATGTGACTAATTTAGATGAAAAAAATCGCAATAAAATACTTACTGCTTTTCATAATTTAGAATCTACATTACAAGATTCTCTTTTATTGGAGGATTTGCCTTTAGAAATTAATTTTGATGAAGATTTAAAGAAATTATTGAAAATGGTTGGATTACATTTAGATCATAAAATGCTGTTAGAACCATATGATATAATTGAAATGGTTCTAAAAGTACACGAAATATGTAATCTTAAAATTGTTCCTGTGATTTGTAATGTCGCTAATTACTTAGATTCACAGCAATTGAATGAGCTTTCTAAACTTGTTAAACAGATGAATTTAGTTTTGATTTTGATAGAATTTACAGATCAAAATTTTAAATTTATTCCTAAAAATGCAGAATTTTACTATATAGATGAAGACCTTGTTGATTGGTATTAGCAGTATTATTAAAATTAGATGATAAAATATCG # Right flank : ATCACCCTTGGTGTGGTTTTAAATATCCGTTAAATCAAAAAAGGCGATTTTAATTAATCGCCTTTTTCTTACGCTTTATTTTAAAATTCCTAACTTTTCTTTTTCTTGTAAGATTCGTTTTACTAACTGGTCAATTTGCTTTTCTGATATTTCTTTATTTTTAACTGCTTGTTTAATTTCTGGGAGTCTGTTTTTGTAATTTCCTCCTAAAAGTAAATCATTACCTGCTTTTAGAGCTAAAACATCAGCGTTTGTGTGGTGTAATTTAGTATATTGTGTAATTACACCCATTTGAAGATCATCAGAAATAATCAAGCCATTGTAATCCAATTTTCTACGTAAAAGTTTATGAACTGTGGGTGAAAGGGATGCAGGTAGCTTAGGATCCATGTTTTAATAATAATGTGTGGGACCATGATACCATCTGCGCCAGCTTCAATACCAGCTTTAAAGGGCAACAGATCTTCGCATTCATAATCTTTAGGAGATTTATTTATTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTCTGTTAGATCAATGAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 391518-391731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046528.1 Lactobacillus acetotolerans strain CN247 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 391518 29 100.0 33 ............................. TGGGTTTGCTAAACAAGGATTTGCCGCCGCTTC 391580 29 96.6 33 ............................C GAACATGGTTGAATTTGTAAAGCTAATGGCAGA 391642 29 100.0 32 ............................. AATAAATTACCACTCGTTATCCCTGGGTTCAA 391703 29 72.4 0 ............T........AAAT.TAA | ========== ====== ====== ====== ============================= ================================= ================== 4 29 92.2 33 GTATTCCCCATGCATATGGGGGTGATCCT # Left flank : GCGGCTAGTTCAATTCTTTTAAAATATTGTAGAAGGAAGCCAATCTAATTAACATTATTTTATAGAAAATGATTTTCAGCCATAAGTTTGAATGGATTGCTGTCAGATTAACGTGGGAAGTATTAAAGTGATTAAAGACTTAACTATGAGAGTGAAAAGATCAGTTAAGCAAAGATATAAGGAAAAGTAGATGTGTCGCTTGATTGCTCCTTACTGAGATGCCAGAAGAAGCTACTAAATTACAGCCATCGGAGTGATTAAATTTATCTAAAAAAGCAAATACATGCTAGTCGAGTCAAAAAGGAAAATGCCAATTAATAATCGTAATTGTTATTTTAATATACGTTTAGATTTTCGATTACGATACATTGTAAAAATTTTTATCAAAGGACAGCTGGTGGTACGATTTTTCACTTGATGTTGAATTATAGTGGTGTGATAAACTAAATAAAAGAGGGACTTTTTAAAAGTGAGAATGTTGTCATAATAAGGATCTTTAA # Right flank : AAAATCGGTAAATCACGAGTAGAGTTGAGAGTCTCTTAAATACTTTACAGGAAGCAGCTTCTGGCTGCTTTTTTGTTTAAAATTTTCGATAAATCTTTACTAATTACGCATTTTTTGTCTAATTTAAGGTACTATAAAATAAAGCGTTTCCAACAGTGAGACCGAACCCGAAAGAGGCGTGATCAATGTCAATACCTTTATCTAAAAGAGCTAAGTCATTGTGGGCAAAAAAGCAAAATCACGATGGCCAGGAATTATGGTTACCGTTAGTTGCTCATTTAGTTGATACCCAAAATGTGATTAACTGGCTTTACCAAAATTGGCTGAATGAAAGTCAACAAGTTATAATTCAGCGGGATTTTACGACAGATGATACTGAAAAGTTACTAAAGTTTGTTGGTTACTTCCATGACATCGGCAAGGCAACGCCAGCTTTTCAAACCAAGCAGTCGTATAATCGGAATCAGACGTTAGATGATGAGCTGATGGAAAAACTATTA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGCATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 401231-401992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046528.1 Lactobacillus acetotolerans strain CN247 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 401231 29 100.0 33 ............................. AACAAATATAGTATTGCTGATATGACCAAGTTA 401293 29 100.0 32 ............................. GTCCCAACTTAAGCAACAGCTTAAACCAGTTC 401354 29 96.6 32 ............................C AGTTTGCCACTTGAAATTTTGGCCAAGTTGGT 401415 29 100.0 32 ............................. CAAACTAATCAAATTCAATTTGTTGCTTATGA 401476 29 100.0 91 ............................. CAGATGGCGCGGTCAATGAACCAAATCATCAAGTATTCCCCTATGTGGGGGTGATCCTAAAGCATCTTCAAACTGGGTATACTGTGACTTC 401596 29 96.6 32 .......................A..... CTTTCAAGATAACGATGGGAATTACCACATTG 401657 29 100.0 33 ............................. TATATATGTTAGCGAGTAACTCATTAGGGCTGC 401719 29 96.6 32 ............................G TTGTTGCAGTGCAATAGCCACCCGGGCATAAA 401780 29 100.0 32 ............................. CAAAACTTAGTTATGGGGAGTGCCACCGGCTG 401841 29 100.0 32 ............................. TATCACGGAGCTTCAATCAACTGACAATACTT 401902 29 96.6 32 ............................C ATTCGACGGTGATTGCTATTCGGCACAACCCG 401963 29 96.6 0 ............................G | T [401988] ========== ====== ====== ====== ============================= =========================================================================================== ================== 12 29 98.6 38 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : AGTAATCAGATAATTTCAATTGGAGCAGTCAAATGTGTAGATGGGCACGTAGCTTCTTTTTATCGTTTAGTAAAATTGGAGAAGGGACGGACAGTTCCAGTGAACATAGCACGGGTGACGAAGCTGAGTGATGCATTGCTTAACCGTGAAGGAGTAGAAACTAAGGACGCGATAATTGATCTTCAACACTTTGTAAAAGATCTGCCGATAGTCGGATATAATTTAATGTTTGATGAGCGCTTCCTACAAGCGGCGGTCATTAAGAATAACTTGATACAATTTAACAGTAAATTGATTGATATTCTTCCATTAATTAAGAGGGTCAATAAGTTTTTTGACAACTATCGATTATCAACGGTTTTAAAAAACTATGGTATTAATAATGAGAGTCCGCATAATTCTCTTTCAGACGCAAGGGCGACGATGGAACTTGCTAATAAACTCATTAAAAATCGGGATCTAAGGATTTAAAAATCGCGGTGTGACAGGGATCTTTTAGT # Right flank : GCTGTACAGATTTGCTTCAATTTAGAGAATAAGTATTCCCAACCATGCAGTCTTCTGTGCATAATAAATTTTATAATGATATCGATTATATGAGTAATAATTATAGGGAGCGACTCCACATGAAAGAAAAAGTTACTGCATTCTATGAAAGCAAATATTTTATTCCTGCTATGGCGTTAGTTTTATTTATAATCGTTACGGCGGTTATTTACTTTGTACTTGAAGAGCTAAAGTTGTGGTTTGCCTTATTTATATTGCTTTGCTTTATCATTTGGCAGATTGCAAGAAATAACTTGAACGAATTTAGTGACGCAGATTAAGTAAGAAGATCTCAATTGGTGTTCGCCAGTTAAGACATTTAAGTGGCCGTGAATTCAAATACCAATTAATTTGAACCAGTTGGTGCTCACTTAGTTCTTCAATGGCTTGGCCTTTGGGAATAAAGCGCCGTAAAACTCGGTTACGGTTCTCATTACTGCCTCGTTCATGTGGCGAATAGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //