Array 1 31232-31929 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000248.1 Nostoc sp. WHI contig-2000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 31232 35 94.4 37 ..............................-A.... TGTTCCAGAATGGAGGTTCGACACTATCTAAGGCGCA 31304 35 94.4 36 ..............................-A.... TCACGTAACAATTGAGAAGAAGGAAGACAAAGATGG T [31324] 31376 36 94.4 40 .....A......................A....... TTTACGAGTGTCGGTCAATATGTGATCATAATTGCATATT 31452 36 97.2 37 ........................A........... AATTCTGGACTGGCAACCCCGACCTCAATGCTGAATA 31525 36 100.0 38 .................................... GATTTTGATGACCGTAGACCTGAACACTCAAGGATTTA 31599 36 97.2 39 .........................G.......... AAGAATACAGTGTTGTAGATATTGTATCCAGTCCAGAAG 31674 36 100.0 37 .................................... TGAGAGAAATGAAACTCGCGGATTGTCGAGCAGGGGG 31747 36 100.0 39 .................................... TGGGACGTATAACTGTATTAAATACTGTAAACAACAAAA 31822 36 100.0 36 .................................... TGTAACGTTTAGTTGCGTCTGGGAGACTTCTAAAAG 31894 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 97.8 38 GTTTCCATCCCCGTGAGGGGAAGTGATTGAGTAAAC # Left flank : ATGGTCAACTGGTCAAGATGAACTTGGGTACGGTCTTGTTTTATGGTTAACTGGTCAAGCCGTCTGCTTGTTGATTCTCCGTAGCTGGCAGTAGACACTAGCAACTGCTTAACAGTTTCGAGTTCATCTTCTACATTGTCTAGTCGCTGTGCGTTGGTCATACTGTTTTCTCTTGGTTGGCTTCTTTATATTATATGATCGCCTTATCGCCTCCCTAATAGGACTACGCAAAAACCCTCTCAAACTCTCATTCCTCCGTGATCTCTGCGTCCTCTGCGGTTCGTTTTCCGGATCGCCTTATCGCCTTCCTAATAATAACTTTTGTTAGTTGTGGGACGCTTAAAAATTCTCTTGTCACCCATCGTTATCTCCATCTGTATAATACATTAGCCTCGCGTATTTTTTGGTTGTGAGGTGTTTTAGTTCTGTGGTCAAAGTTGATTAAAATATTGATTTTTTAGAGTTGACTTGATTTATCTATTCAACCACATCATAGTCAA # Right flank : CCCCACCCTTCTAGAACCCTTACTGTGACTGGTCTTCAAAGGTCATTTTCGAGTGGGTCTAATTTACTTGTCAATAAGCCTAAATTATTGACAAAAATCTAATAGTACATCCGCTCAAACGCTTACACAGCAGCTTGTCGAGGGGGTCAACGAAAGAATCAGGGTTTGAGCGATCGCCATACCCCCCCCACAAAACTTACGTGTCCAAAGTCAAAATAAATACTTTTGCTTTCATTAGGAAACTTGTGATTCAATTGTCAAGGTTCTGTTACTAATGGACATGAACTTAACATACTACTGTTAAATTGTCAAGTCGGCACTAATTCACCAGGACGCAACTTCGACCACTTACCCATTTCCCGCTTAAAGCTCAGACAACCAACAACATCCCATTCCATTTCAATTACATCATCTTTAGTCCGAATGTTGACATTGATAGAAGGTTCATTCGGGTCAAAATCTGGTGTTTCAGTCAAGTGAGGCTGTTGGTGCTGCCCTTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGTGATTGAGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 16297-18498 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000101.1 Nostoc sp. WHI contig-21000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16297 37 100.0 37 ..................................... TTGCTCAACTCGCTGATTGTCCCGACGCTCTCGCCTA 16371 37 100.0 37 ..................................... TTAACACCTGTAACCACCAGCCCACCCAGCCAAGAAA 16445 37 100.0 36 ..................................... AAGCGTGTTGTTGCACATCAAGCACTTTCTTGATTA 16518 37 100.0 36 ..................................... CGTGATTCGATATTGCAAAAAACAACAACATCTGGC 16591 37 100.0 35 ..................................... AAGGACAGTACACCTGTTGATAAGTAGCATCAAAA 16663 37 100.0 35 ..................................... AGGCAAATGATTAATACCAACTGTAAAGTTGAAGA 16735 37 100.0 37 ..................................... GCATTCGCTGTAACTACATACTGCTGAGTATCGCCAG 16809 37 100.0 37 ..................................... GCCAAATATACCGCAGTATGCACCCACAGCAATAGGC 16883 37 100.0 34 ..................................... GTATGCCCCAGTGGAAAAGAGACTTGGTACAGTG 16954 37 100.0 36 ..................................... GCCTTCATTTCAAAAGGCGGGTCGGTGAATACTAAA 17027 37 100.0 36 ..................................... GCCAAGCAACACAAAAAAGTAGCTGATAAGCGTAAA 17100 37 100.0 32 ..................................... AACGATAGTACGTATAGGCTCTATACAGAAAA 17169 37 100.0 37 ..................................... ACGAGATTGGCATGAACTTGCCAACTCGATTAGTAGG 17243 37 100.0 35 ..................................... GGCGGTAGGCTAGGGAAACAGCTTGTCAAACAAAA 17315 37 100.0 34 ..................................... TTTGGCGACTGCCAACTTAAGCGATCGCCGCCAA 17386 37 100.0 33 ..................................... GCAACAGTAGACTAAAACCTTAAGTACTACTTT 17456 37 100.0 36 ..................................... GCAACGGGCATTCAGACCTTCGCTAGCACATACGAA 17529 37 100.0 32 ..................................... CTAAATTCACTCTTCCCAGAATCATTACTACT 17598 37 100.0 33 ..................................... GCGGCGGCGGGATACCATCTCTTGCAGGTACAG 17668 37 97.3 36 ...C................................. AAACTTTTCTTGTGGGCAACAGCACGACATACATTC 17741 37 100.0 35 ..................................... GGGTGTTACCAAGGTGGGACAAACCCGCCAGTTGA 17813 37 100.0 33 ..................................... CTCGTCGTTCACGCCAACAATGCACCGATTTCC 17883 37 100.0 34 ..................................... AGAAGGTGTAAAAGGCAATTGGTTAAAGCGTTTA 17954 37 100.0 33 ..................................... CAGTATCCTAGCATACAGAAGTACTAAGGTTAG 18024 37 100.0 36 ..................................... CTAGTCCTCCTGGCAGTGAATCTACCTCAAAATATC 18097 37 100.0 35 ..................................... CAGAATGCAAACTCGATCCTTGCAACATTGAACGC 18169 37 100.0 34 ..................................... GACATATCTTTTTATTGGCCTAGTGATGAAGAGG 18240 37 100.0 35 ..................................... CTAGGTTGATACTCTATCTCATTTTTTAGTACTTT 18312 37 100.0 36 ..................................... TTATGTATGACAATTCTTACCGACATGAATTTAATT 18385 37 100.0 39 ..................................... ACACGTATCTTGAAGTTTCTGTAACGTGAGTAAGGAATG 18461 37 91.9 0 ........T.C......................G... | T [18473] ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 99.7 35 ATTGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : AAACTAAACCCAGAAAAACGGAGCTTTATGAGTTTATATCGTCCTGCTTGAAACAAGTTGACCGCCAAGATCGTTTTATGTTTTCTCTGCTGTTCATAGAATTGACAGACCTTATACGCAATTCTTCGCTGGAAAGGGGAACGAAAGAGGTTTTGATTAAAACAGCTTTTAGGGAGTTCGCTTGTGCCATAACAGATTTTGAGGATGTTGCCAAATAAGGTTGGCAAAGTCTTAACAGGTTAGAACGTTACTTAGATTGGTTTCTTTGCTAAATGCGCGGATGGGTAGGTGTTGGGGAAAGGGTGACTACAAAAATGCCTGAATTGCTCTATGTGCAAGAAGTTGAGAGCGATCACGTTTCTAAACTATCCGCGCACCTTATGGGGACTGCTTTTCAGCTATTTGCATCTAGCCAAGCGATAACTCTTCGTGTTATGATTTTCGCATTCGCGCAATTGAACCTTGAAAACCAAATAAAACACGGCTTTCAGACGCCAGCC # Right flank : CAATTACCTTCTAGCAAAGTCCAGAAGTAGCCATCTGGGGCGACAAAGGAGAAACTCGTCTCGCCAAACTCATTGCTAATGATGTTTGTAACTTCTTGTACAGTACTTGCCTTGATGCGATCGCAATACTCCTGTATTCCTTTTACACGATAGGTATATAAAGACATACCCAAGCTACCTGGTTTAGCTGCCTCAAAGCGCGATTCTAAATTAATATATTCTGGAAATCGAATGATATAAAGTCTACCACTGCGTGCAGCCATCAAATCAGACTTGGAAGAACGAGGATCATCAAAGGTAGTGACAATAAACTTTTCACCAGGATTAAGGTCAAAAATATCCCGACCGGCTGGCGAAGATTCATAGCTAGTTTCGACATCATCACGCACACGCAGCAAACCCAAAACTTCTTCATAAAACTTCAGGGTTTCTTTGCTGTCATCTTGAACGATTATTCCTATATGGGTAAACTGACTAGTTTTAAGTGCAGCATTCTGGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 88945-91155 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000135.1 Nostoc sp. WHI contig-1000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 88945 37 100.0 32 ..................................... CCGCCCACGACGACGGGTTATTTACTTTTTAC 89014 37 100.0 35 ..................................... ATCTATCAGTATTTCTGCCTCTTCCAGTGATGGAA 89086 37 100.0 38 ..................................... AGAAAACGATAGGTTTTTCCTTGAAGATCCAAAATATA 89161 37 100.0 34 ..................................... TCACCATCAGCACCCGCACAGTGTAGTCACTGGC 89232 37 100.0 36 ..................................... GGATTCAGGTAAGTTGCAGCCAACAGCAGAAGCGCT 89305 37 100.0 33 ..................................... AGACCAACTGCCAATAAATCTGATTTTTTAATA 89375 37 100.0 34 ..................................... GTTAAAAAACAAAGTCTCGCTGACGGATTAACCC 89446 37 100.0 40 ..................................... TAAATTACCAATAGTTTATCATGCTCAGTCCCCATCCAAA 89523 37 100.0 35 ..................................... GTTATTCTCACCATTCTACTCTCGATTCCTCAAGT 89595 37 100.0 35 ..................................... TTAGAGTTGCTAGCGGTTCCCGCTTTATTAGCGAT 89667 37 100.0 33 ..................................... GAGAGCAAGGTAATCGAGGCTAAAAAACAGGCT 89737 37 100.0 37 ..................................... AAATCATCCACCATTAAGGTGTATTCAGTTCCTACGG 89811 37 100.0 34 ..................................... AAGTCTAGTTGCGTAGTCAATAAATCGTCAAAGG 89882 37 100.0 35 ..................................... ATACTTGCTGAGGCACTGCATCGCAACCATGTAAG 89954 37 100.0 33 ..................................... TAGTGCTTGATTTGCGGTATTGTTGGCACTTGA 90024 37 100.0 39 ..................................... ATTTGTCCATCAACATTTCGTTTATTTTGCCTGGCTTCA 90100 37 100.0 37 ..................................... TTTTGAAGCGATAACCCCACCCGTAGGAGGACATCCT 90174 37 100.0 38 ..................................... AGCCATTACCGATTTCCCGCTACCTGCTTTACCCTCGA 90249 37 100.0 35 ..................................... ATCGAACCTGTTATCGTAAGCGGCGATGTAATAGA 90321 37 100.0 34 ..................................... AATCTTCAATCCCTTGGCACCCACTTGCTTTTGA 90392 37 100.0 35 ..................................... AGGGAATACGACACTTCGGAACTCAAAACCATCTC 90464 37 100.0 46 ..................................... TGGAATATTTGCCAAGTGCCTATCGCTGTAGGCGTGTACTGCGGGA 90547 37 100.0 37 ..................................... GGCAATACGAGTTCCACAACTCCAACAATTACTTTAG 90621 37 100.0 34 ..................................... AAAGTACTGCACTGTCTAACTACCTTCTCGCTAT 90692 37 100.0 35 ..................................... GCATCCACAATTCCACCTGCTGCTGACACCATTGA 90764 37 100.0 36 ..................................... AATGGCTTTGGTGATTTTACCATCGGTAAAGGTTGC 90837 37 100.0 33 ..................................... GCCCCAACTTCATCATCATTGAAAATCCTACAG 90907 37 100.0 35 ..................................... TAGTAAACCTAATTGTTCTAGGGTTCCTACTTCTA 90979 37 100.0 31 ..................................... TTGATAGCACGGCAGAATTCCGTACTTTTAT 91047 37 100.0 35 ..................................... CTCAGAGTACCGTTGCTGGCATTAAAAATCCCTTT 91119 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 31 37 100.0 36 ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Left flank : TACAGATGTTAGCTGTTAAGGAAAAATTTTAAGATTATTGGGAGTGCGAAGGCGTAGCTCAGTCCAGGCGATCGCTCTCAACTCAGCTAGGTACAGCTTGGCGTAAAACTGTGGCTGATTGAGGGTTGAAAGTCAAATGCAGAGGGGCGCAGAGTGTACGCAAAGGTTTGATAAGCGGTGATTGTTTTAGCTAAGACTTTATGAAAGCCTGTATTAAACTCATTGATATTGATAATGAGCCGCTTTGTAATCAGACTAGTTTTTTTTGCCAAATGCGCGGATGGGTAGGTGTTGGTGAGAGGGTGACTACAAAAATGGCTGAATTGCCGTATATGCAAGCATTTAACGGCTGTAGCATCTTTAAACGATCCGCGCACCTTATGTGGACTGGGTTTCAGCTATTTACATCTAGCGCAATTACAATTCCTTGTGTTATGATTTGTTCATCCGCGCTACTGAACCTTGAAAACCATATAATACAAGGCTTTCAAACGCCAGCC # Right flank : CATCAGAACGAGTTCATCGTACCAACCCCAGAGTTGTCAAATTTGAGTTATGAAAACTATCGAAACTTAGCTATAAGTTCCTGCTGTCTCATTCGTGACCTTAACAAGTTCTGGCTCGATATCATCTATCTTATTAAACTCTCCAGCCCGCCAGCTATCTGTTATGTCCTTAATAAAACTGGCAATAGGTATTGCAATTAACAAACCTAGTACTCCTCCCAACTTTGCCCCCAGCAGTAAAGAAATCACCACCCACACTGGATTTAAGCCAGTCAAATTGCCGAGAATACGAGGTGCAATAACATTAGAATTAACTTGGTCGATCGCAACAGCAACACCTAAAACTTCTACTCCTAGCCAAAAGTTTTGCAACGCCACCAATAGACTAACTATGGCAATACCTACCCCCGTACCAAAAGGAAACAGAGAAAACAAGCCAATGCCAATGCCAAAAAGTAAAGCCAAGGGAACTTGCAGCGCCAAAAACGCTAGTGTAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 15676-16003 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000033.1 Nostoc sp. WHI contig-39000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 15676 37 97.3 34 .............A....................... TGAAGTTCCTACAAGCTTCGACATTTTAGGACGC 15747 37 97.3 34 .............A....................... TCATCGGCTACGGCCTGCTTACTGGCTGATTTAA 15818 37 100.0 41 ..................................... TTCCGCCTAGCACCCAATATCTATAAAGCTGAGGATCTAGA 15896 37 100.0 34 ..................................... TTTGGGCGGTGTGTGACAAAAACTGACTTTTGTA 15967 37 86.5 0 ...............................AAT.TG | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 96.2 36 ATTGCAATTAACCTAAATCCCTATTAGGGATTGAAAC # Left flank : CAGCAGCAGACATTCAAAAAATTCTCAATCAACTAGCTCAAACTAATCCAACAACAGACGTAGTTACAGAAGCTATTCATCAAGAAATTAAACGCAATCCCACACTAAAAGCAAGATTGATATCTGCGCTAGAAGCAGGAGTACTGGAAGGATTAAAGACATTTGTTAACCATCCACTTTTCAATATTCCGGCTGAAACAATAAAAGGATTCCTAGAAGCCGAATAGGTGATGCTTTGTAGTAGGGTTTGAAATCAGACTTGTTTTTTGCAAAATGCGCGGCTAGGTAGGTGTGCAAAATAACAATCCGTAAAAAATGGCTGAATTGCCCTATATGCAACAACTTGAGAGCCAAAGCATTACTAAATCATCCGCGCACTTTATGTAGACTGCCTTTCAGCAATTTACATCTAGTCAAATGACTAACCGCCGTGTTATGATTTTTGCATTCGCGCTTTTGAACCTTGAAAACCAAATACAGCAAAGCTTTCAGATGCAGTC # Right flank : GCGTCAATTTCAAGCTTTTGGTTAGTGTCTAGCTCTACACCATTAATAACCACAGGTGACAACATAGCCAAACTAGCCGCCGCCCCCAATACCTGCTCATCGCTCACTTCTAAATATCTCTGTAACTGCTCCAAATTCCGATGCCCTGATATCTCCTGAATAACTCTCAATGGAATACCAGCATTACTCATCTGGGTTAGTCCCGTCCTTCTAAAGCTATGGGTACTCGCGCCGATTATCCCAGCTTGTTTGCAAGCTCCTCTCAAAATCCTAGCGGCTGAGTCTTCGCTGATATGTCCATCACTGCGACCGGGGAACAAATAAATCTCTCCGGCCAGTGGGTAGTATTCAGTGAGCAACCGCCGCAGGTCTTCGATCACTGGGATTGATCGGGTTGCAAGTTTACCCTTGGTGTTTGATTTTCTGATAATCAACCGGGGTCTGACGTTTCCCTTGGGTGTGTAGATGTCTTGGGTGAACAGGGTACAGCATTCTCGAAT # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 16360-15171 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000347.1 Nostoc sp. WHI contig-4000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 16359 37 100.0 36 ..................................... CTGCTAGCATCAAAAATATACCAACAAGCCACGGAT 16286 37 100.0 35 ..................................... TAGAATAATTAGCGGCAACAGCTGCTTTAAGGTTG 16214 37 100.0 37 ..................................... ACTACCTGGATGCTTATCAGAGGTTTCTATTAGCAAT 16140 37 100.0 36 ..................................... CTTTCTCCTCTAATTCCTCTATTTGCTCCTCTAGTT 16067 37 100.0 36 ..................................... ATGCACAGATCGCACCCTTTGAAGTGATAGCGATAT 15994 37 100.0 36 ..................................... ACCTCAATAAATCCCCGTTCAGCCTGTTCCGTGAAG 15921 37 100.0 36 ..................................... TTCGGATCGTCGCCGTCAGGCTGATAAGGAGGACTT 15848 37 100.0 36 ..................................... TTGACTGCTTTCCTTTTGACATATATTTGCTGAGAT 15775 37 100.0 35 ..................................... CCTAAATCGGAGGATAATACCCTGTTAGGGTCAAT 15703 37 100.0 37 ..................................... TGGATCGAGACTAGCTGCAAAGTAAGGGTTCGGGGTA 15629 37 100.0 37 ..................................... CTTTCTCAGCTTTTTGCAGGTTTTTCCCACTACCTAA 15555 37 100.0 36 ..................................... ACCGATTCTAGTCCAATTATATCCCCATTGATTGGA 15482 37 100.0 36 ..................................... TTGCAGTCGCTGCGATCGCCGCCCACTTCTCCATAA 15409 37 100.0 41 ..................................... ATAAAATCCCCTATGCGCCGATGAGGTTGGAGGAAATACTG 15331 37 100.0 38 ..................................... CTAACGTCATCACAGTTTTGTAGTCTGCCTTGATCAAT 15256 37 100.0 12 ..................................... GCACAATTACAG Deletion [15208] 15207 36 73.0 0 .......A-.G..T.C.A......A.....T.A...T | G [15185] ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 98.4 35 GTTTCCACTAACCAAATCCCCTCACGGGGACTGAAAC # Left flank : TTTAATTCTCAGTTAGAGAGCTAGATTCTCAATAAAAACAGTTATTTAGCTGCGATCGCACCTCTAGATAGGTGATTTAGTACCCGAATTTTAACCACCTCACAAAATCGCATTGCTCCCGGAGGAGACAGTCAAAAGTCTGTTGCAGTCGTTGGGGAAGGTGAATCGACCTTGGTTGACTGCTGTAGAGGAGAAATTGTTGAGTTTAATTGAGCGAGAATACGGGCTTATAGATCAATTTATACAAACTTGTGGACAATAATAGATACACGTCTTATGATTATGTAATCAGCTTGATGTTTGGCAAGTCGAAGCGAGGGCTAAAACCCTGGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAATTACAGCGTTTCAAAACTTCGGGAAGTTGCAAATTACTTGCAATAAGAGCGGCTGAAAATGACCTTTTTTTTCGATCCGTCAAAAACCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGATGGAGCG # Right flank : CTAAAGATTAAGCAGGGTTTTCCTGGCACAATTGATTAACAACTCTTTCGATTTCCAGTGTCATCCAATCAGAGCCTGTGTGGTGGTAAACTAGAACTAATGATTGGTAGAACCACAAAGTTTTTTCTCGACCGGCACTAAAATTAGTCCAGATGACATCTCCATATTGTTGCCAATCAGCTAAAAGCGATCTGGAATTATGCAGTTTGTCAGCCAGAGAAACCAAGCGTACAGAAGGTGAAGCAGAACGGAGATTATTGAGGTAATGCTGCTTACGTTCTTGCCAGGGAGGTTTAGGAGGTGTATCCCACTCAGTACAGCCATCGATAATAGCCAAAACTGTTTCACCAAAGAGTTGACGGATGTCGTCACGAATGGGTTTGCCACCTTGATCTTCTACTGCATCATGCAAAAGAGCAGCGATCGCTTCTTCTTCCGTGCCTCCAGCTTCTAAAACTAAAGCCGTTACACTTAACAAATGTGAAATGTAAGGAACGCCG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACTAACCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 391-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000183.1 Nostoc sp. WHI contig-6000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 390 36 100.0 34 .................................... GTTGCAGACAATATTATTCTTGCTTACCGAGATG 320 36 100.0 37 .................................... CTTAAGTGGCCTGTAATTATTGGTTTTATTGTTTGGA 247 36 100.0 36 .................................... GTAGTAATCCCACCTATCGAGCCGTTGGTGGTTATG 175 36 100.0 36 .................................... CGTTACTACAGATTTGTGTTCGCAACCATCTCAGGG 103 36 100.0 34 .................................... AATAGCATCTATTCATACAATCAAAATATTGCCT 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 98.6 36 CTGCCCAAACCTTTGATGCCAATAGGCGTTGAGCAC # Left flank : TCAATACTTGCTTTCTGTAGTTACACCTCTTCTTCCCATACTACTCAAGTTTGGAGAGTACTATTTTAAACTTATTATTAGGAAGTCCCCAATCATCTTGATTATCAATCCAATAGCCAACGTCAGCAGGGCTTTCGATGATCTTGGAAGGTTTGCTAGTTTGGGCGATTGGCTCCGGTATTGAGTTGAGAGAGCGATCGCACTTGTGAACAAGTTGATATGTGGATTTTTACATGGATCTCCGACTGTGAAGCCTACGATAGAGAAACACAAGCAGAAAACCCTTGCTGGACTGGCTTTTCAAAGTTTTTAGGCTATCTGTAGGTGCTTGTATTTTCTTTTAATGGCTTGGAAGTTACACAGCACAAGGGTTTCAAATTTCTCTGCTATTCTTAAAGATAAGATTTGGGTAAATATTTGCTCAATGTGTTCCTTTATTTAACGAGGTGCTTGTAATATTGAATCTCAGAGGAGTTCTGATATAGGTTTTAGCGATCGCA # Right flank : G # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCCCAAACCTTTGATGCCAATAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 105276-103240 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000291.1 Nostoc sp. WHI contig-1000023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 105275 36 100.0 35 .................................... TATAATTCATCTTCCGTACACGCCAGTTTAAACCT 105204 36 100.0 37 .................................... ATATGTTGTGTGAGCATAACTATCACGGGGGAAACAT 105131 36 100.0 36 .................................... GGGAGATGAGAAAACAGTAGTAACTCGAATTCCTGA 105059 36 100.0 34 .................................... TTCTACGCAATTACGAAGAAGTTCTTCATTAGGA 104989 36 100.0 35 .................................... GGCTTTAAGGCTTGTAAAAACCCTGAGTATGTCAT 104918 36 100.0 34 .................................... TACTAATTTCTCAATATGATAAAGTAAGTGCTTG 104848 36 100.0 35 .................................... ATAGGGTTCCTCAAACCCTGTATTTTGGTAAATTC 104777 36 100.0 34 .................................... GCAGCAGAAAAAGCAAGTATTTGAGGCCAGGCTA 104707 36 100.0 35 .................................... AATTAGATTCTGAAAAGCCTGGTGCATTAGCAACT 104636 36 100.0 34 .................................... ATTCCCGATATAGCTTGCATCTCTCTAAATGCAG 104566 36 100.0 36 .................................... ACTTCACTACAGCTACGCTCGTTACGGGGGCTTCAC 104494 36 100.0 37 .................................... CGCTTCTCCCCCGATTTCCAAAATGACAATAACACAA 104421 36 86.1 35 ....................TTTC...A........ TACGGGGGGAGAATTAGCAGCGATCGCACTCCAAT 104350 36 100.0 36 .................................... GCAAAAGGAAGCTTTCTTTTTATACCCAATGTTACG 104278 36 100.0 37 .................................... CTTATGCAAGTCAGAAAAAGGAATAATTGCAGCGATT 104205 36 100.0 34 .................................... TCAGGGGATGAAATGGACTATTGTTGCAGTCAAC 104135 36 100.0 37 .................................... AATAAGAATACAGATGATTAAAAGGGCGATTAATGAC 104062 36 100.0 35 .................................... TAGCAACACTGCGGAGCTTTAAAACTTGATGCTAA 103991 36 100.0 35 .................................... ACAATTAACGGCAAGAGGAGGGAATATTAAAAATG 103920 36 100.0 34 .................................... ATAGTGGGGAGTTGATTTTAGGGCAGAAAGTGAC 103850 36 100.0 39 .................................... GACTAACACCAGCAGAAGCAGCGATCGCTTATGATGCAA 103775 36 100.0 37 .................................... ACTAAACTAGCAGACTTAGGACGATCGCAACTACTAC 103702 36 100.0 36 .................................... TCAGAAATTGCGATCGCATTGCGCTGTGCCTCAGCA 103630 36 100.0 35 .................................... TTTTGGCCTTCACCTGTTCGTTGCGTCTGCCCTGG 103559 36 100.0 34 .................................... ACAATTACTGCAATCCTTGGAGAGATTGGGTCTG 103489 36 97.2 34 ..................T................. TATTTAAGCGTACCTACAAAGGTAGCTTAATTTA 103419 36 100.0 35 .................................... TTCAGAGGCGCGGGTAAAATTGGGATTCGTTCAGT 103348 36 100.0 36 .................................... TATTATGCTCTTTCTCTAGCTAATAGATATAAGAAG 103276 36 86.1 0 ....CT........................T...TA | T [103242] ========== ====== ====== ====== ==================================== ======================================= ================== 29 36 98.9 35 CTGATCAAACCTTAGATGCCGAAAGGCGTTGAGCAC # Left flank : AAGCTTACAACTTACTTAAAGGCTATGGTGAAAGGATGCAATATTCTATTTTTCGCTCTTGGCTAACTATGCGATCGCGCGAAAAATTACGTTGGGAACTTGAAAAAATATTGGCTCCAGAAGATAGTCTGCTTCTAATTCGTTTGTCAAATCAGTGCGTTGCTCGCATCCCATCATATAATCGTCCAGATGCTTGGTCATCTCAACAGGAAGCTTACCGGATTGTTTGATGCATGGATCTGAGACTGTTAAGGCTAAAACGGAATTAAACAAGCTCGAAACTCTTACTGTATTTGCTTGTTTTACTTTTTAGACTGGCTGGAGGTGCTTGCATTTTTTTGTAATAGCTTAGAAGCTAGACAGGACAAGGGGTTTAAGATTGCTTCCCATCGTTAAAGGTGACATTTGTTTAGGATTTTTGTTACTCTGTTAATCTCTTAGGTGAGGTGCTTGTAAAATCGAATCTGGGAGATATTCTGGTATACGTTTCAGCACGCGCC # Right flank : TAGAGTCTACTATTAAGCAGATTGACCATCGAACTAAAATTTCTGGGCGCACACTGGAAAAGTGATAACGTTCCTAAAATCTTAGTTCAATGGATTAATCTTTGCTCACTAAACAAAAGCTTTTTCTTCTACTTTTTCCTTAACTAGCACATACGGTTTTTCTGCACCTTGTGCTAGATATTCTGCTAGCTGACTTTCTATTTGATCGCGGACAATTTGGCGATACTCTAGAAAATGCTCGTTGTGGGCACAAGCGGCGAGGTAATGTTCAATAACTCCAGGGTTAAGCTTGAGAATGCTGAACAAATGATGCCAGAATTTCCAGCGAGTTTCCCGTTTGATTCCTTGTCGCCAAATTACAGTCAGCAACGCTCTAATAACTATCCACTCAGGCATTTTGGCTGGTGCTTTCCAACTGGGCAAACCCATCATTAAGAAACAGCGATAGGTACGATCCAAATACTGCACTGGGTCATATAAAGTACAAAAAGCCTCAATAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATCAAACCTTAGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 115781-114717 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000291.1 Nostoc sp. WHI contig-1000023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================= ================== 115780 36 100.0 34 .................................... AATAGCATCTATTCATACAATCAAAATATTGCCT 115710 36 100.0 35 .................................... TTCTTTGTATGTAGGCAATATTTTGATTGTATGAA 115639 36 100.0 34 .................................... TACGGGAAGGGGCATATATATTAGAGCGGCGCTA 115569 36 100.0 37 .................................... GGAGGTAGGGGACGCATGAGTACCGCCTAAATCAGTA 115496 36 100.0 35 .................................... CTGGTGTATTTCCCCTTGGCTTCCCCAATTAACAT 115425 36 100.0 36 .................................... TTGCCTGTAACTGGAATGGCTGACATTGACTGCCCA 115353 36 100.0 35 .................................... CTTTTACTGAAGCAACAGCGTGTTCGTAATTTACA 115282 36 97.2 35 .....................G.............. GTAGATAAATTAGGATTTTATGGAGTCGAAGAGAC 115211 36 97.2 35 .....................G.............. TGCTTTTTCTGCGATCGCTCTGGTAATCGCTTGGC 115140 36 97.2 34 .....................G.............. GAAACCTTCAATTCACATGAAAAAGGCGATCGCA 115070 36 100.0 36 .................................... GGATAATAGTAGAAATGCTTCCCCTTACCTGTTGAA 114998 36 100.0 35 .................................... AGAAAATTAATACAATTGAGCAACGAGTAACCAAA 114927 36 97.2 37 .....................G.............. TGCCAATTCCAGGTTAATTCTGTACTAGGTTCAATTA 114854 36 100.0 65 .................................... TTTCACGATTTAAAGGTTTGATACTTTTGAGTGCTGTAGAGCATCTGGGACTAACATAACCCTGC 114753 36 80.6 0 T...T.......A.......GTC............T | T [114746] ========== ====== ====== ====== ==================================== ================================================================= ================== 15 36 98.0 37 CTGCCCAAACCTTTGATGCCAATAGGCGTTGAGCAC # Left flank : | # Right flank : ATTAGTAAATAACTTGACATCATCCTAAATTTCTGTTATTCATGAATTATTCTGATGTTTCAGGATTTAAAAGTATTCTCCTTCAGTTTTTGGTTGAAACGTAGTTCAATACTGGCTTTAAGCCCTATGTGCTGCTAGTTTTTAATCGCTACCTCAGATGCCGTAAGGTTTTGAACATTTTAAGTATTTAAAATTTTGTCATTTCGGGGGATTCCTAAAGTGATTGCATCTGTAGGTTTTTCTGCATATCAAAATGCAGGTAATGAACTTGAGCCATTTGTTGAGCTTTGCTTTCCAGTCCGAGGGAAATGTTTGCCTGCGGATCATAACTATGCTCTTTTTGCAGCGTGTGTTCATATAATTCCAGAGATACGTCAGCAAACAGCAATCAGTATTCTGACAATTCCTGGTTTTGCTGATAAACAAGGCAAAATTCTTCTGACAGAACAATCTTGCTTGCGAATTCGCGTACCGATTCCTCAAATTTCGTTGATTTATAA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCCCAAACCTTTGATGCCAATAGGCGTTGAGCAC # Alternate repeat : CTGCCCAAACCTTTGATGCCAGTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 592-2285 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000095.1 Nostoc sp. WHI contig-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 592 37 100.0 35 ..................................... GTAAGTTCTTACACGGCGAATGTTACCAGAAGCAG 664 37 100.0 35 ..................................... TTATAAATGCGCTTCTCTCCAGACTTTCAGAACAA 736 37 100.0 35 ..................................... TTGAAATAAACTTGAGCGAGCGTTGAATTGTGTGG 808 37 100.0 33 ..................................... AATTCGTCATTGCCCAAAAATTCATCTCGTCAC 878 37 100.0 35 ..................................... CTTGAGTTCACAAGCAAAGCGATCGCCCTTTTCTA 950 37 100.0 36 ..................................... GCGTGAAACTGAATTTCAAAGCAACTTCGGGCGCGA 1023 37 100.0 35 ..................................... TACCGAGTGGTTGATTCGCTGGTACCGTTCATGCA 1095 37 100.0 35 ..................................... AATCGTATTATTACGTTTCTGGATATGGCATAGAA 1167 37 100.0 36 ..................................... TTGTAAGTCTTGCCGATAACGCCTAAAGCTCCACCA 1240 37 100.0 37 ..................................... CAGTTACAGTAGGAATTGCCGTGCCTACGACAGCAGC 1314 37 100.0 34 ..................................... AAAAAGTGGATGGGAGAGGATGGAGCGATGAGAA 1385 37 100.0 33 ..................................... ATCAGCCGTCACTCTATTGCCCTGTACTGCAAT 1455 37 100.0 38 ..................................... TACCCTACATCAATTATTTGGTGTTAGTGCTAGCCAAA 1530 37 100.0 34 ..................................... ACAACATGCCATTTATTATCGTTGTAAGCTAATG 1601 37 100.0 35 ..................................... TTGTACCTTCAAGAGTTAGTATCCCGTAGGAGAGA 1673 37 100.0 35 ..................................... TAGAGTGTGGCGGGAGTGGGGAGCAAGAGTTATGC 1745 37 100.0 33 ..................................... TCAAGTGGTTGCTGCTTCCCTAGTGCAGATAGC 1815 37 100.0 37 ..................................... AAAATACATTTTAATGCCGGGATTTTGAATCAAAAAG 1889 37 100.0 35 ..................................... GTGGTGCGTTTCAACGGCAACATTTCTATGGAACT 1961 37 100.0 35 ..................................... CTAAAAATACCGATGGCAAGAACGCAGGTGGTACA 2033 37 100.0 35 ..................................... TTGGGAGTACCAGTGTTCACAAATCACCCAGTCAC 2105 37 100.0 36 ..................................... TACATTACGAACAGGCTTAGAGTCGTAGACCCGCAA 2178 37 100.0 34 ..................................... TACCCATTGTCCGTAAATTGAAGAAAATTCCGAA 2249 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 100.0 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : ATTCGGTTCTCAAGTCTTACGGACAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCCTACTCAGTATGCTAAACTGCGATCGCGTTTAGCTAAATTGATTAAACCCGACACTGACAGCGTTCGCTTTTATTTTCTCTGTGGCTGTTGTCAGCGAAAAGTCGAACGTATTGGTGGAGAACAGCCACGGGACGAAACAATTTTCTTTGCTGAGTCCCCTTCTGGCTAGGTTTCTGTATGTTAAATGCGCGGAAGGGTGGGTGTACAAATTCCACAGTCCCAAAAAAGTGCTTCTATGTCAACTCCAGCAAGGGTTTCACCCGTTAGTCGCCCACTTTTCATCCGCGCAATCTCTGAAATGCTTACTAAAATTGGGTTTCAGCCTTTAAAGTTTCCCGACACTCTTCCCAAACGAATCCTGTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATACAGCTTGGCTTTCAGCCTCCCGCG # Right flank : CCAATAGAAACAACTACTTAAAAAAACCTCCAGCTTAAATGCTTGGAGGTTTTTTAAGGCTAACACCTAAGAACAAATAGCTTTTTAAAACTTGACAAAATACGTATTTGTTGGCAAGACTTGGGTAGTTCCTGAATTTGTAGCCAAGTCATTTATATTACCTGTTTTAAGTACTGCAAACTTATCAGTAAAGAGCAATACTTCACCATTGCCAGGAGTAACCCAAGCTTGCCGAGTATTCAGATTATTAGGAACAACCAAAAAACTTGCATCGCCACGGTAAGCCGGGATACGTCTACCTAAGAAAAGTTGGCTATCTCTATTGGGAATTGCGTAAGCAGCAGAGGAACCCACAAAAATATTAGTGCCATTAGCATAAATGGTTTTAGGGAAATTACCATTTCCGTCACCCAATCCACTAGATGCAGGGAGTCTTGGAAAGGCTAACTGTCCGCGCTCAACAGTAAAGGTAGTAAGATCAACAACTCCCGTATATACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 119417-119170 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000095.1 Nostoc sp. WHI contig-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 119416 31 100.0 41 ............................... GATCACCACCGGAACAAATCATAGCAAGTTGTTCTGGGGAT 119344 31 100.0 41 ............................... GATCACATTTGGTAAAACTTTCTCTTCCTCAAGCCACAAGC 119272 31 100.0 42 ............................... TAGAAACGAAATATTGTGATTAATTTCACTCCTGCTGATTTA 119199 30 77.4 0 GCTT........A....-.T........... | ========== ====== ====== ====== =============================== ========================================== ================== 4 31 94.3 42 CTGCTTCAATATTAGATTGCCTTTAGGCGTT # Left flank : GTTCAAAATGAAGAGGGTTTGCTAACCCTACCTTATTGGGTTGACCACGTTGGGTCACAGGGAACACGATGGCAGCGTTATATGCTGCAAAAATCCTTGGGGAGGCAACCACCTGAATTATCGTGGACTGTAATCCAGACAGCTTAGATAATATTCACCTCGAATTACATCTCATGTTACCTTGCCCAATACGGAAAAATTTTTCAGAGGTGTATTGTTTCAATTAACAAGAGAGTATGTCAAACATTTTTTGCAAGGATGCCTGTTTGTAGAGTCAGGACAAGAGGATAAAGCATCTGTGTTCCTTGCTAAATGGAGTATTCAGCAGTTTCAAGCTGATTTAAGGTGCTTGCAATCTCTTGAAACACTAACAGGATAAGCTTTTTTAGCTTGAGATAAAGGGTTAAACCATTTCAGTGTGTCAATTTCGAGATGTTTTGCGGCAGGTGCTTGTAATCTTACCTGGAGGTAGCTATGAATCAATAAGTTTAGGGATTACC # Right flank : TTAGCATAATAATTGTTAGTTTTTCAACAAAGAGCTAACAATTATTGTGCTTTAAAAAAATCTTCAATAGAATTAGCCAAAAATTTTATTATTAAGATATGCATTACACGGTCTATCACTGGATTAAGGTCACAGGCAAGTAGACAATTACTCAAATATTTGTCTGGGTTTTTTATTCTTTTTGGATTAATGGCTTCTAAAAAATCTTGTCCGTAATATGCCAACACTGCGTTATAAAATTCTTGCTCATGAAATATAAATTTATCTTTAGAGAATACGGTTATAAAGTTTTTATTAGTTAAATAGGTCTTATACTGGCTACGAAGCCAGGATAAACCTTGAAAAGTGAAATTATTATTAATCAGCCATTCAATATCATTAGCAAATACTAATAGCTTTTGTAGAGTTGCATCATTGTAAATTGTTGTGCCTGTGTTTAGTGGACAGTTATCGTCACTTGGAGCATGATAATGTATTTCTTTAGTTTCTATTGGGACTAA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTTCAATATTAGATTGCCTTTAGGCGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 129011-129261 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000095.1 Nostoc sp. WHI contig-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 129011 36 100.0 35 .................................... TAGAAATCTACCCCGTTGATTGAAGTAATAGAAAT 129082 36 100.0 35 .................................... ATCTCAGAGCGGGTCATAACGCCTAAGAATTCGCA 129153 36 100.0 37 .................................... CATTTAACTTTGAGGGCATCGTGGGTTTGTTGAGATA 129226 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 36 GTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAC # Left flank : TTAATTTGGGATGGTTGCAAAAAATTCACTACAGCATCACCTGCTGTAGCGTTCACAAAGCTGGCAATGGTAATCAAGATTGTATTGATGATTACTGCTGCTAGCCCCAAAGGTGCTATCAACAGGATAATTAAAGTGATAGCACCGTTGAGTAAGGCTATTCCAAGATTACGGATTAATGCAGCGCGGGAAGAGATATACATAAATTATGATGTTTGATGCTTCTTTCTTTTTTATCCATACTTCAAAAGTAGGTGCTGGTTTGAGATCCTGCTAGTGGTTTCATGCGAATGACAAATTTACTAAGTTTTTTAATTTACCTGCGGCGGGGTCGGCAAAACTTGGAAATGCCTATGTTCTCGTTGACCCTGCCGATGTCTCTCTGTACAAGGATTTCAGGGTTTTTATATTTCCTTGTAAAGGTAAAAATTTCTCTATTCACCGACCCCGCCGCAAATGGCATCTGGACATCAGACACCATAAGGGTTTAAATAAGAGGG # Right flank : TAACTATATCTTCTCCAATTACTTCAGAGATAACGTTGTCGCTTCTCTTCGGAGAAGTGGAATTAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 8611-7618 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000359.1 Nostoc sp. WHI contig-7000029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 8610 37 100.0 37 ..................................... AATCATCCTGCCAACAGGATTACCCAATAAACTATTA 8536 37 100.0 36 ..................................... AATCTCATTCTTGAGACTGGAAGATACCTTAAGCTT 8463 37 100.0 36 ..................................... TCCAAGGTAGAAAGAGTAGCTAACATCATCGGTAGA 8390 37 100.0 35 ..................................... GGGACATATCCCCGTAAGGGCTGAGTACTGCTGGT 8318 37 100.0 35 ..................................... ATGCTATACACTCCCATGTAGAGTTAGAAAAAGAA 8246 37 100.0 36 ..................................... TAAATCCATGTCGCCAGTGTCAGGCAGATAGCCAAA 8173 37 100.0 36 ..................................... TTGACTTACGACACGTAACCAACCAACTTCGCTCAC 8100 37 100.0 36 ..................................... TGGTGTTTACCAATCCCAAGAAATTACCCACAATAA 8027 37 100.0 35 ..................................... GATGTATTCATCCTTACCTATGACTAGATTTTTAA 7955 37 100.0 35 ..................................... TTACTTTCTCTTCCTCCAAAATTACACCTCCAAAT 7883 37 100.0 42 ..................................... TTATCTACCGCAGTCTGAACATCCGCGGGGACAGTACCAGTA 7804 37 91.9 35 .............G.......T..............T AAGTCGTTGTTAGCGTGGTAACTTATCATCGTGTG 7732 37 91.9 36 .......A..............TA............. TTATCAACCTACTCGATAAACTGAAATATACAATTC GTGTA [7710] 7654 36 86.5 0 ...........T..-......A.....C...A..... | A [7647] ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 97.9 36 GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Left flank : AAACTCCATCCATACGTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAACCCTACACCAGTAGGTAAAGCATCCATAGCAGTTACATAAGCAGCAAGAGTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAACCGTTGGTAGTGTTCTGCAAATCTCTGAGATCCTGGTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAACAATGTAGTGCCATCACCTATTTGACCATAGCTGACCGTAGGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCCAATTTTCGAGCCTCAAACCCCTACTGCAACTATTCTTGAGCGATTGCAAACCCAAAGGAGGTTCGCGGAAAACCTGAAAAGCTTATACTGACCATGTTTAAAGTATTTTTGTTCAAAAGGAAACTTGACAGGCAATAGCTGAAACAGTACTTTTGGATCAGATTCACGAAAATGGGCGCTGTAAGTCCTTTACTTTATGGCTTCTAGCCCCCAGCA # Right flank : AACAGGTCCGAAAGCTTCCCTTTTTATTTCTCCGCTGCTTCTCCTCAAGTTTGCGCCGTCACTAAAACAACAACTAAATAATCAAATGAGAATTTACTGCTCCAAAACTTCCAACTGATAAATTCTTAAAGATGGATATTCTGCCATTAAGCGCCAGTAGCAGTGTTCTGGTGGTAAAGAAGGTCTGTCATTACAACGATATAAAAATACTGGCTCATCTCTCAGAAGCCCTGTCAGCGCCACTTTGTTCCAGTCCTGTTCGCCTAAATCCCAAATCAGATGCGACCTACCAAGGTATCTTGCATTCATTAGACTCGCAAACAGCCACTCCATAATCTGCTGAATTTGTTGCGTCTCAAGTCCACTATCGCTTTGACCGTAGCATTCGATTTCAAGCTTATTAGATTTTGGCTTTATCAGTTTTAGCAGTAAGGACGGGATTTTCAAAAGACTCTTCATTATCCAGGCACGCCCATTAAATATATTTATGGTGGGAGAAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 9906-8906 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000359.1 Nostoc sp. WHI contig-7000029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 9905 36 100.0 37 .................................... GCATGGGTTTATCTAGGGGGATTTTATTATAGAAAAG 9832 36 100.0 38 .................................... CCCAATAAGCAATTTATCATCCCTAACATCGTTAAATT 9758 36 100.0 36 .................................... TCCCAGTAGTCTGTAGGTTGAGATGAAACAAAGTTG 9686 36 100.0 39 .................................... AAGTAGCAATCAAATTCTGCTTTGCTATCAAATGTCGTT 9611 36 100.0 47 .................................... TGTACCGCTTCTCCGTATGCACGATATGGGTCAAGTGCTATGAGATT 9528 36 100.0 37 .................................... ACTGCAAACAAAATCAGTGACCAACATTACTACTGAA 9455 36 100.0 39 .................................... TACTGTCATGTCCTGACAAAAATTCTTAAACTTCCAAGA 9380 36 100.0 35 .................................... CCTGTGGCGGTAAAACTAACCCTAAAGCACCTGGA 9309 36 100.0 35 .................................... TTCACCCACGCCGCCGTCCACATCGTCTAAATAGG 9238 36 100.0 35 .................................... TTCTCAGCACTAGGGAATGTCTTACCAGTTACACG 9167 36 100.0 36 .................................... GTGAGTTTACCGATTTGGTCTAAACTCCATCCATAC 9095 36 100.0 48 .................................... CCTACACCAGTAGGTAAAGCATCCATAGCAGTTACATAAGCAGCAAGA 9011 36 100.0 34 .................................... CGTTGGTAGTGTTCTGCAAATCTCTGAGATCCTG 8941 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 14 36 100.0 38 GTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAC # Left flank : | # Right flank : AATGTAGTGCCATCACCTATTTGACCATAGCTGACCGTAGGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCCAATTTTCGAGCCTCAAACCCCTACTGCAACTATTCTTGAGCGATTGCAAACCCAAAGGAGGTTCGCGGAAAACCTGAAAAGCTTATACTGACCATGTTTAAAGTATTTTTGTTCAAAAGGAAACTTGACAGGCAATAGCTGAAACAGTACTTTTGGATCAGATTCACGAAAATGGGCGCTGTAAGTCCTTTACTTTATGGCTTCTAGCCCCCAGCAGTCTCCACTAACTATGTGGAGGCGAATTAATGGAAACAATCATCCTGCCAACAGGATTACCCAATAAACTATTAGTCTCCACTAACTATGTGGAGGCGAATTAATGGAAACAATCTCATTCTTGAGACTGGAAGATACCTTAAGCTTGTCTCCACTAACTATGTGGAGGCGAATTAATGGAAACTCCAAGGTAGAAAGAGTAGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 29505-30909 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000061.1 Nostoc sp. WHI contig-7048000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 29505 37 100.0 35 ..................................... TTTGGCATCACACGCTAACTTTTGAATTATTCGCC 29577 37 100.0 32 ..................................... GAATGCAGTTTGGGCAACTGAAGCGCGATCGT 29646 37 100.0 34 ..................................... CAGATGGGTAAAAATCTTTAATTGGATAGGAAGA 29717 37 100.0 40 ..................................... ACTCTCAGGATGGAATACAATTATTCGTTTTCCGCAAAGC 29794 37 100.0 33 ..................................... TGAGGTGGTTTACTTATCAATCGCCGCACTCAA 29864 37 100.0 35 ..................................... GTGTTTAACGCGCTAAATGCTAGCGGTGAGGTAAG 29936 37 100.0 34 ..................................... TCTCTCTACGCTCGATCAGTCTGTCCATTGCAAG 30007 37 100.0 35 ..................................... TAATTTATCAAAACTCACATCAAGAGTAATTCGTG 30079 37 100.0 33 ..................................... TCAATACCCTGTACTTGTGGTATTTGCAGCACA 30149 37 100.0 34 ..................................... GGCAATGGTGCGTCAGGCAGTGCTTCTAGTGCGG 30220 37 100.0 35 ..................................... AAGGTGTGCAAGCCTTTCTCGTTCGCCTACGTTGG 30292 37 100.0 35 ..................................... CCAAGCAAGCAGCATCACTAATCTAAACACCCAAA 30364 37 100.0 35 ..................................... CCAAGCAAGCAGCATCACTAATCTAAACACCCAAA 30436 37 100.0 35 ..................................... AAGTTGCTGCTTACTTACTGCAAAGCCTGTTTTAT 30508 37 100.0 38 ..................................... CAAAACCGAATTCATGTGGGAGAACCTTTTACAGTGTG 30583 37 100.0 35 ..................................... GAAATAACGCCAAATAGGGATAATAAAGATGAAGT 30655 37 100.0 33 ..................................... AAACTTGTATCATCCATTGGTACAGATGTGTCA 30725 37 100.0 36 ..................................... CTTTTACCTCTGATAAATTATCGAACGGCGCTATTA 30798 37 100.0 38 ..................................... GAACTCGATACATCTATTATGTATCGTTTTTACCTTGC 30873 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 99.9 35 ATTGCAATTCACCAAAATCCCTATTAGGGATTGAAAC # Left flank : TCCTAATATGCCAGGAGCAGTACCTTGGACAGCAACTCAGGCACTCAATAATAGTACATTACCTTATGTTGTCCAGTTGGCGAATTTAGGAATTAAGGCATTGGAAGTTAACCCAGCATTAGCTAAGGGTGTGAATGTGCAGAATCATCACTTAGTGCATCCTGCTGTGCAAGAAGTATTTCCTGATTTGGGAAATTAAGGTGTGCAAGTATTAGGCGATCGCTTATTTTAATGATGGTAGCGATCGATAATTAGGCTAATTTCTTTGCCAAATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGGGCAAAAAATGGCTGCACCTCCATCTATATAAGACTTTGGAGGCAAGAGTGCTTTTAAACCATCCGCGCACCTTATGGGGACTATGTTTCAGCGATTTGCATCTTGTGCTATGACTATTCCCTGTGTTATGATTCAATGGTTCGCGCAACTGCACCTTGAAAACAAAATACAGCACGGCTTTTAGATGCCAGCT # Right flank : CAGCTACGCTATATCTACGCCGTCTAGCATAGTTCGCACCTCAAAACGGGTCTAAGAGCAAGATTCAGCCATTTTTACCCCTATTTAGTTGATCCCATGCTCATATAGAAAATTATGTATAATTTGCTCATAAAGATAATTACTGAGATGCAATTAAAAACCTTATGCCATTTATAATGTTGCTTGGTTTAGGAACTGCGGCTGCGGCTTTTTTTCTCTTACAAGGGTATAAACGTTCTCGAAAAGTAAAAGAAGAAGAAAATAAGAAATACGAACAACGTCAAGAAAATAATCGGTTAGAAAATCAGAAGCATTACCGTAATATTTCGCTAGAAAGGTATAAGCATTACCTTAATGTTTTGCTAGAAGATCATAAGTTTATCCTGAATATTATTCTTGCTATTTTGACTGTTCCATTAACTGTATTTGGTTACATTTTGTGGGAGAATTATAAAAAGTATCTTAACAAATCTGATTCTCAACCTATATCTGCGATTGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCACCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 36804-37790 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000390.1 Nostoc sp. WHI contig-7146000031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 36804 37 100.0 44 ..................................... ATCAGACCGCTTCAATAGGAACGATTGCAACTATATGCCACTAC 36885 37 100.0 36 ..................................... ATAAACCTGAAAAAGATTAGCAAAAACCTGTAAAGA 36958 37 100.0 36 ..................................... CAGAAACGTGAGCATAGTAAGCTTCAACATCAAAAG 37031 37 100.0 36 ..................................... CTAATAAAACTCATTTTGCAACATACTACGCTTTAC 37104 37 100.0 34 ..................................... ACAGATACATTGAGGCAGAAAACGAGTTTGAAGC 37175 37 100.0 34 ..................................... AATTTACAGCTTGTCAAGCTACAAGAGCAACAGC 37246 37 100.0 34 ..................................... TCAACAAGGTATAGGCACTGCCTCTATTTTGGAT 37317 37 100.0 35 ..................................... ATTTTTCTCCTAAAAAATTCTTAAGGGAAACATAG 37389 37 100.0 36 ..................................... CTACACCGGCTCATATTACGCTATCACCACTTCTGG 37462 37 100.0 36 ..................................... GTACACCAGACGGTGAAGCAATTAAGCGGTTGAACT 37535 37 100.0 34 ..................................... CATAGGAATACTAGCCAACAAGCAAGAGGAATTT 37606 37 100.0 38 ..................................... GTGGTACAGCTGATCGGATTTTGCGAGATGCCTGTAAG 37681 37 100.0 36 ..................................... CAAGAATCCATCATCATCGAATTATTTTGCATCTAT 37754 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 14 37 100.0 36 ATCGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTACGAGTCTTTAATTTAGGCATGGTCTAACTTTGATTCGACACGATCCATTATTATATACTATTAAAATTGCTAGAACGGCAATTAAATAAATGATTTAACCAACTGCGATCGCTCTGGATAAAATTAACTTGGCGAATCTCTATAGCTATTGTCAGGGAAAAGTCGAATTTATTGGCAAAGAGCAGTCACAGAATGAAACAATTTTCTTTGCTGAGTATCCTTCTGATTAGGTTCCTGGGTGTCAAATGCGCGGAAGGGTAGGTGTACAAATCTCATAGCTGACAAAAAGTGCTTCTATGTCAATCCCAGCAAGCATTTCACCCATCAGTCGCCCAATTATCATCCGCGCAATCTCTGAAAGGCTTACAAAAATTGGGTTTCAGCCTTAAATCTTTCCCGACACTCTTCCCAAAGGAATTCTGTAATGCTATGATTGCTCTTGACTCGCGCAACTGCACCTTGAAAACTAAATACAGCTTGGCTTTCAGGCTCCCGCG # Right flank : CCTAGCTATACTCAACCAAAAAATTCCATTCACTTAGCCAGATCACGAAGTGCATTCCGATACTTTCTATTTACCTTTTTATAAGCTTCCATTGCCTTTTCAAATTCAGACTTATGAGATATGCCTTGAGTATTGGAAGAATGTCTTACAACGTAAAATTTACCGCCCTTACTATGTCTAAATCTTAGACCTTGAAAAGACGGTATTAATCTCAACCTGTTTTCAATCATACGAAATCTCAAGGTTTGCATGATTAAGTAAGCCCATAGCTAGAGCTTTAGTCTACTTGTCCTAAACTCAATATACCCCACCTATTTGGGCTACCGTGTACACACAAGTTATCTGATCCCCCTAAATCCCCCTTAAAAAGGGGGACTTCAAGAATTTTCCCCCCTTTTTAAGGGGGGTTAGGGGGGATCAAAACGCTATTAGGCAACTTTATAAGACTTGTGTGTACACCGTAGCCTATTTGGGTGAGGTCACTTTTTGCTAACAGATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 71-1788 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000256.1 Nostoc sp. WHI contig-77000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 71 37 100.0 35 ..................................... AACCAAAGGTAAAAGTGATAGAAACCGAGCGCTTG 143 37 100.0 49 ..................................... AGACCGCTAATCGGGTCAGGATACTGGCGAATTTGGGAGCCGCCCTCAA 229 37 100.0 33 ..................................... CCAAATGGTACAGTGTAAGCCTGATAAAGGTTC 299 37 100.0 33 ..................................... ACTTAAGAGTGTAGACATCAGATGAATTTGTCC 369 37 100.0 38 ..................................... ACAACTAGAATTCAATTCCTCAAAAGATGTCCGTCAAA 444 37 100.0 34 ..................................... AGAGAATTGCTGCTGAAACTGCGATTTACGATGC 515 37 100.0 35 ..................................... TAAATGCTGGCGCGATCGCACCTGAAATAATTCAA 587 37 100.0 35 ..................................... TCATTTACTTAATATTTTGAAACCATTGCAGATTT 659 37 100.0 35 ..................................... AGTGCATCAACCAATCGAGTAACACTCAAGGATAA 731 37 100.0 35 ..................................... CTTGACTATGGCAGTGAGAGTTACAGGGTTCGTTG 803 37 100.0 35 ..................................... ACCAACAAAAGAACGCAATACTATCCAAACACACG 875 37 100.0 35 ..................................... TCCTATGAGAATGTTGACAAGAAAGACTTGCAAGA 947 37 100.0 34 ..................................... ACGAGTGAACCTTCTTTTTTTGTGGCTTGCTGTA 1018 37 100.0 36 ..................................... AATTGTTCGCATTGCGACGGAACAGGAGAGGACTGA 1091 37 100.0 36 ..................................... CATTCATCTTGCTCCAGAATCCTTTACACTCGTTCC 1164 37 100.0 35 ..................................... ATCCCTCCTTATTTCAACAGTGCGTTTAAATTCCT 1236 37 100.0 39 ..................................... CTACTTTTACAGAACCTCACAAAGTCTTCAGTGCTTTTG 1312 37 100.0 36 ..................................... TAGATTTACTCCAAATACTAACCCGCCATAAATATT 1385 37 100.0 40 ..................................... AATCCTTGACCTCTGATCTCATCAATTGCTTGCTTCAAAA 1462 37 100.0 33 ..................................... TTAATTCTGTTGCTACAGGATTAGGTATCTTTA 1532 37 100.0 35 ..................................... ATGATCAATCATTTTTTTGACAACGTGGGCAAATT 1604 37 100.0 38 ..................................... GGTTTGTTTGCAGCAGTTGCAAGATAGAGCGATCGCAC 1679 37 100.0 36 ..................................... TCCTGAAATTCAGGGAGATCAAACAAAGACATTTGC 1752 37 94.6 0 ..............G.................A.... | ========== ====== ====== ====== ===================================== ================================================= ================== 24 37 99.8 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCATCAAAATCCCTATTAGGGATTGAAACTATATCATAGGCAATATTTACAGCATTGCGGTGGTCACTAA # Right flank : CATTGAGTCGCAGTAGTGCCGACTTCGGGTATTATCACATAGCTTCATTGTGCAATTTATTCTGAGGCGTGAGGTGGATTAGATGAGAATGAAATAGCTCTGGTTCTATATCGGCGGTAAAGCGATCGCGCCTTAGATCGATTTGCGATAAAATATCAACGCTGTAGTAAGCATTTTCAAAAAAGTTTGTTTTGATTGTGTATTAACCAACAGTTAAAAACGGTAAGACAGCATTATGCATCGTATAAGTAGCACATCGGGTGGATGGAATCAGTCAGAGGGTTTAATTTTTTTAGAACAAACTCCAGCGCCTTTTGTGTTGATTACGGCTGCCGATACCGACATTCAAACCCTAGCAGCTGCGGTGACAAAATTACCTGCAAGCTTTCCAGCATTAAGAGTTGCCAACCTCTTGCAGTTGCAGCAACAATTAAGCATAGATACTTATGGAGAGCAAGTTTTAGAACTTGCCGAGGTAATTATTTTGCGCCTGTTAGGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1365-3575 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000108.1 Nostoc sp. WHI contig-8000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1365 37 100.0 32 ..................................... CCGCCCACGACGACGGGTTATTTACTTTTTAC 1434 37 100.0 35 ..................................... ATCTATCAGTATTTCTGCCTCTTCCAGTGATGGAA 1506 37 100.0 38 ..................................... AGAAAACGATAGGTTTTTCCTTGAAGATCCAAAATATA 1581 37 100.0 34 ..................................... TCACCATCAGCACCCGCACAGTGTAGTCACTGGC 1652 37 100.0 36 ..................................... GGATTCAGGTAAGTTGCAGCCAACAGCAGAAGCGCT 1725 37 100.0 33 ..................................... AGACCAACTGCCAATAAATCTGATTTTTTAATA 1795 37 100.0 34 ..................................... GTTAAAAAACAAAGTCTCGCTGACGGATTAACCC 1866 37 100.0 40 ..................................... TAAATTACCAATAGTTTATCATGCTCAGTCCCCATCCAAA 1943 37 100.0 35 ..................................... GTTATTCTCACCATTCTACTCTCGATTCCTCAAGT 2015 37 100.0 35 ..................................... TTAGAGTTGCTAGCGGTTCCCGCTTTATTAGCGAT 2087 37 100.0 33 ..................................... GAGAGCAAGGTAATCGAGGCTAAAAAACAGGCT 2157 37 100.0 37 ..................................... AAATCATCCACCATTAAGGTGTATTCAGTTCCTACGG 2231 37 100.0 34 ..................................... AAGTCTAGTTGCGTAGTCAATAAATCGTCAAAGG 2302 37 100.0 35 ..................................... ATACTTGCTGAGGCACTGCATCGCAACCATGTAAG 2374 37 100.0 33 ..................................... TAGTGCTTGATTTGCGGTATTGTTGGCACTTGA 2444 37 100.0 39 ..................................... ATTTGTCCATCAACATTTCGTTTATTTTGCCTGGCTTCA 2520 37 100.0 37 ..................................... TTTTGAAGCGATAACCCCACCCGTAGGAGGACATCCT 2594 37 100.0 38 ..................................... AGCCATTACCGATTTCCCGCTACCTGCTTTACCCTCGA 2669 37 100.0 35 ..................................... ATCGAACCTGTTATCGTAAGCGGCGATGTAATAGA 2741 37 100.0 34 ..................................... AATCTTCAATCCCTTGGCACCCACTTGCTTTTGA 2812 37 100.0 35 ..................................... AGGGAATACGACACTTCGGAACTCAAAACCATCTC 2884 37 100.0 46 ..................................... TGGAATATTTGCCAAGTGCCTATCGCTGTAGGCGTGTACTGCGGGA 2967 37 100.0 37 ..................................... GGCAATACGAGTTCCACAACTCCAACAATTACTTTAG 3041 37 100.0 34 ..................................... AAAGTACTGCACTGTCTAACTACCTTCTCGCTAT 3112 37 100.0 35 ..................................... GCATCCACAATTCCACCTGCTGCTGACACCATTGA 3184 37 100.0 36 ..................................... AATGGCTTTGGTGATTTTACCATCGGTAAAGGTTGC 3257 37 100.0 33 ..................................... GCCCCAACTTCATCATCATTGAAAATCCTACAG 3327 37 100.0 35 ..................................... TAGTAAACCTAATTGTTCTAGGGTTCCTACTTCTA 3399 37 100.0 31 ..................................... TTGATAGCACGGCAGAATTCCGTACTTTTAT 3467 37 100.0 35 ..................................... CTCAGAGTACCGTTGCTGGCATTAAAAATCCCTTT 3539 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 31 37 100.0 36 ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Left flank : TACAGATGTTAGCTGTTAAGGAAAAATTTTAAGATTATTGGGAGTGCGAAGGCGTAGCTCAGTCCAGGCGATCGCTCTCAACTCAGCTAGGTACAGCTTGGCGTAAAACTGTGGCTGATTGAGGGTTGAAAGTCAAATGCAGAGGGGCGCAGAGTGTACGCAAAGGTTTGATAAGCGGTGATTGTTTTAGCTAAGACTTTATGAAAGCCTGTATTAAACTCATTGATATTGATAATGAGCCGCTTTGTAATCAGACTAGTTTTTTTTGCCAAATGCGCGGATGGGTAGGTGTTGGTGAGAGGGTGACTACAAAAATGGCTGAATTGCCGTATATGCAAGCATTTAACGGCTGTAGCATCTTTAAACGATCCGCGCACCTTATGTGGACTGGGTTTCAGCTATTTACATCTAGCGCAATTACAATTCCTTGTGTTATGATTTGTTCATCCGCGCTACTGAACCTTGAAAACCATATAATACAAGGCTTTCAAACGCCAGCC # Right flank : CATCAGAACGAGTTCATCGTACCAACCCCAGAGTTGTCAAATTTGAGTTATGAAAACTATCGAAACTTAGCTATAAGTTCCTGCTGTCTCATTCGTGACCTTAACAAGTTCTGGCTCGATATCATCTATCTTATTAAACTCTCCAGCCCGCCAGCTATCTGTTATGTCCTTAATAAAACTGGCAATAGGTATTGCAATTAACAAACCTAGTACTCCTCCCAACTTTGCCCCCAGCAGTAAAGAAATCACCACCCACACTGGATTTAAGCCAGTCAAATTGCCGAGAATACGAGGTGCAATAACATTAGAATTAACTTGGTCGATCGCAACAGCAACACCTAAAACTTCTACTCCTAGCCAAAAGTTTTGCAACGCCACCAATAGACTAACTATGGCAATACCTACCCCCGTACCAAAAGGAAACAGAGAAAACAAGCCAATGCCAATGCCAAAAAGTAAAGCCAAGGGAACTTGCAGCGCCAAAAACGCTAGTGTAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 1306-1656 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000380.1 Nostoc sp. WHI contig-9000031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1306 24 95.8 42 .......A................ GGGAAACATCGCTCACCTGCGTTCTTGAAATATCTAGCGATG 1372 24 100.0 42 ........................ GGGAAACATCGCTCACCTGCGTTCTTGAAATATCTAGCGATG 1438 24 100.0 42 ........................ CAGAAATATCGCTCATCCACAACACGTATAGATTTAGCTTTG 1504 24 100.0 39 ........................ CAGAAATATCGCCCACCCACACGTATAGATTTAGCGATG 1567 24 95.8 42 .............A.......... CGGAAATATCACTTACCTGCGTTCCCCAAAGATATAGCTGTG 1633 24 79.2 0 .............C..G.AT.A.. | ========== ====== ====== ====== ======================== ========================================== ================== 6 24 95.1 42 TGAGGTTGGTCAGGTTAGCCAGAG # Left flank : GCCTACAATACTTCTTTATCCACCGTTGACAAACTCGCAGATGACGTGAACAACGCAGAACAGGTTTTAATGTCAATGTCAGAAAAAATGTTACTAGGAGTTGGCAGCCGTTACGGTAAAAACAGCCAAGAATATGAGATGGCGGGTGGTGCGCGACGAGGTAATAACAAGAATAAGCAACGTACACCGGGAAATGTCAAACTCACCAATCTTTTAGCAAGCGATTCTGTTGAGCTTTCTACTGTAAACGGATCTATGAATGGGGCGTCGGGTGCGTAGGCGTAGCTCGTCGTAGACATCGCAGTTAGCTAAGATCCAACAGGAAATTTAAGTTGTCAAAAGCCTTAGGATAATGATAATCAAATAGAGGGGGAGGAGGCAAGTGTCGCTTGCCTCCTCCCCATGTCTTTATGCACAATTATCATTTTTATTGAGATTATTTTGGGTATTTTAATTGATTGACAAAAAGCACTTTATTTTAACCTCTCACGAATAGATTT # Right flank : GAATTTAAGTTATGCAATTTTCTTGGAATTGAAATCGGAAGAAGCCCATGTTCTTCAACGTGTTGCCTAATGACTGATATTTGACTCCAATCATCAACAAAGCTCACTAGTTCTTGAGCAACTTTGACAGTCGAATCATCTAAAAACTCTTTCAGAAGATCGCTGGCTCTCTGGTCACCGATTAATCCCAGCGTTCGCACACACGCTGCACGTTCTGCTGCTTTCAAGCCTGTTCGATTTTTAAGATAAGGTATGATCGCTTCACCACAGGATGCTAAGGCTGTTGCATCTGTCAAATTTTGAGGTGGCAAAAGCTGTTTTGATAACTGAGTAAAGGCTTGGCTAATTTCTGAATCATTTAGCTGGTAAGCATTTGTGTAACACCGAAGGAAAAAGAACTGCTGTGACCTAATTTTTGCAGCTTCTAATCGGTCTTCTTTTTTCCGTGCTTTAGAGGGAGCATTTAAAGGAGTTTTTTCAAGAATTGCTTTTACAAGCTC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGGTTGGTCAGGTTAGCCAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 47567-47100 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000340.1 Nostoc sp. WHI contig-11000027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 47566 38 100.0 34 ...................................... TGTTCTCTATTGCCCAGTCAATATGTGCATTAAA 47494 38 100.0 33 ...................................... GGTGCAAATTCAGTAAACTACGCATTCCACTAT 47423 38 97.4 34 .....................................C GGTGATGAACCTGCAATCTTCCTTTGGCATTACA 47351 38 100.0 33 ...................................... GCATTTGTACGCCTTTTCACCCATGATGTACAG 47280 37 97.4 33 ....................-................. TGGATTTTGGAGGTGCTTATTTACCAGGGCATC 47210 38 100.0 35 ...................................... ATATGCAGATTATTGCTGGTAAGTCCGTCAATTAT 47137 38 86.8 0 ................................ATC.TA | ========== ====== ====== ====== ====================================== =================================== ================== 7 38 97.4 34 GTGGCAACAACCCTCCAGGTACTGGGTGGGTTGAAAGT # Left flank : AGCAAAAGAATTAGCACTTTCTACTTACCATGATCGGCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGATAATAGAATATTAATAGCGCCGCAATTCATGCTGCTTGCAGCCTCTGAATTGTGTTAAATGAGGGTTAGTTTGACTGTAGAAATACAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTTATGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTGAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTAAGAGTTCCGCGCAAGTTCCAGATACCTTGCCCCGTCTGAATTTATCGTTTTTCCATCCAGATATGATTCTTGTGACTGAGGCTCAAATAGGAAATTGGGAGACATACGCGCTGAGGAAATCTAGAAAAGTTGCCCTACAATATTTTGAAACTGAGTGG # Right flank : ATTTTTATTAGGGAGGGTTGAAAGAGAGCGCTACGTTGACATTATCGCTATAGTCTCTGTAAATAAATGACATTAATCTGTCACTGGTACTTAAACGACATCAATTTGTCCCGACGACAGTTAATTAGTCCAAACGACATTAATCTGTCACTAACGACAAATAATTAGTCACTGTACAACAAATGGACGTAACTGGATTCGAACCAGTGACCTCTACGATGTCAACGTAGCGCTCTAACCAACTGAGCTATACGTCCTTAACCACACAATTATTAATAATAGCATAGATTTTCTTGATAAAGGCAAGATATATAATTTGACTTGAGAATTAATGCGATCGCCTTCTTCCCGTGATTCCAAAACAGCAAAAACATTGCACTGGCACTCAAAGCTACAACAACATTCACTTGTGCAGTGTATGATTGTTAAAGTTATTCGGTTCTGGTGGGAGTCAGCTACCAGAGGTAACGGGGAAAGTTCGGTGCAAATCCGGCACTGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAACAACCCTCCAGGTACTGGGTGGGTTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 1408-252 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000190.1 Nostoc sp. WHI contig-161000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1407 37 100.0 46 ..................................... TATATTGCGGGATATTCGGCAACGCCAATGAAGGCATAGCGCACTT 1324 37 100.0 41 ..................................... CTGTAGTTAAGCAGCTTGAGCTATTGCAGCGCACGCTTGAG 1246 37 100.0 40 ..................................... GCCAGATTGAAGATGAAATCGCAGCCAAGAAACTTGAGAG 1169 37 100.0 36 ..................................... GTTAGGAGTGGGCGACGATTGCCACATCCGTTTCTC 1096 37 100.0 41 ..................................... GAATCAATGACTATCATAAATACTGTTGCAACAATACTCAT 1018 37 100.0 33 ..................................... TAAGAAAACTTAGCTGCTCCTTTCCGTACTTCT 948 37 100.0 35 ..................................... TTTGAGGTAGACGATTCTGAAAGTAAGCAATTGTT 876 37 97.3 38 ............T........................ GATTTTCTTACGAATACTTTCCACTTGTAGGGAGAGAA 801 37 100.0 36 ..................................... TAAGTAATGAGTTATAAGTTAGGAAAGGCAAAAAGG 728 37 100.0 36 ..................................... GCCAATGTATCAGAATTAGTCCCGAAAACTTCTGCG 655 37 100.0 35 ..................................... GAACAAATTCAATATCTTCATATTTTAATGTTTCC 583 37 100.0 37 ..................................... ATTGCAGTGTAATCAGACAATGAATTGACAGGCGATG 509 37 100.0 36 ..................................... CTGATTCAAGACGCGGAAGGATACATGCAAAGCTTG 436 37 100.0 38 ..................................... ATGCACTTAATATTGCCCCTACCCCTGTTGTAGATTTA 361 37 100.0 36 ..................................... CAGGGAACTCATGATTGACAGTCAGACGATTCAAGA 288 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 16 37 99.8 38 GTTTCCAAAGCCCATTACCCCGCAAGGGGACTGAAAC # Left flank : GCCTTTTGAAGTTAAACAGTTACGAGGTTCAATGACTTCTGAAACCGATGATTAATTTCATCAGGAGTAAATTGATTAATAAGTTTTCTCCATAACTCATTACCATAACTCTAAAATGTCAGTACTTTACATAACTCAGGCTGATGCCGTTTTGAGCAAGAACTACGAAGCTTTTAATGTTGCTCTCAAGCAATCCGATGGTTCTTGGAAAAAACAGACTGTTGCAGCCCAAACTGTCGAACAAGTTGTCTTAATGGGCAATCCTCAAGTCACAGGTGATGCTCTAGTTTATGCTTTAGAATTGGGTATGCCTGTTCACTATCTTTCTAGCTTTGGTAAATATCTGGGTTCTGCGCTTCCTGGTTATTCGCGCAACGGTCAATTGCGATTAGCTCAATATAAACTATATAGCGATCCTGTCGGGCGTTTAGAATTAGTCAAAGCAATTGTGACAGCCAAAATTCATAACCAATATCAGGTTTTGTATCGCCACAATGAGA # Right flank : CATGGGTAACGGGCGATCGCTTCTATTACTCCTTCAAGTTTCTAAAACCTATTACCCGGCCAAATTAACGAGAGCGAATTACTAGCTGTTTGGCTTTTGTTAAGTCAAAGAGGATTGAATCTAATTTCATTAAATTTATCGTAATCGACCACGGGGCGATCGCAAATTACAAGAAAGTAAAACCCATTGACATCAAAGAGTTAGAGTTCAAAAGAAGCAGACAGCAGACTGATTCAATTTGGGAAATCAAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGCCCATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 8023-8358 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000382.1 Nostoc sp. WHI contig-16000031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 8023 36 100.0 35 .................................... AAAATACTTCAGGTCTGAGTGGTTGTAAATTAAAA 8094 36 100.0 42 .................................... TTCGTAATCCGCCTTCACAAATTGGGCATTACCGAGCAACAG 8172 36 100.0 40 .................................... CCAATTATACAGAACGAAAAACCCGAACTATTTACCTAAC 8248 36 100.0 39 .................................... TTTACTTCTTCCGCCGTGAATGGAGCCACGGAAGCCTTG 8323 36 88.9 0 ............................G.AA...A | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 97.8 39 CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Left flank : TATAGTATTTAAGGTTTTGTGCAAGTTTGGAATTATATAGCACTAGGGGAATTACTGTGACATTTACATCTTCTCGGAAAAATCGAGAATGTAAATACCTTTTCATGCGAATGACGAAATATTTTTTGGATGTCTGAGCAAGATTTAATTGTGTAGCCTGTTAAGGTATTGCATTTTTGTGAGATGATTTATGTCACGCAGAGGCGCAGACGCGGAGAGAAGATGAGGAGTTTTAGATTTTAATACATCAATTCCATCGCCTGTTTCTGCAAAACCACTGTTAATTATTGACTATCAACGGGAAATTTGAGACGTTCATCGACACCACTCACCAAATCGCCAAAACCCTATATTTTTCGTTGAGTGGTGTCGATTGCTTACTGGGTAAGGATTTGAGGTATGCGTGTTTTTAAATTTTACACAACATAATATAATGTTTTTTAGAGTGGTGTCGATTTGGTGGCTGAAAGCCTTACGGGGCAAAGCCTCCTAAACGAACT # Right flank : ACAATCCGATTACTTAGCTTCTCTCTTTCAGAAGCTAAGTTAATTCAACCCTTCATTAATACCGTCGTCATTCGCTTGAAAGGGCTAGACAACAAACAAATAACAGTTAAAAGTTAAAGTAGAAAAACTTTTAGCCTTGAACTTCTGATGATCTGTCACTTCCTCATCGGTATCCCCGGTAGTGGGAAAACCACATTCGCGGTCGAGTTAGCAAAACTGGGGAATTATCGCATTGTCTCCACTGATGCAATTCGCCAACAACTCTACGGCGATCCAAGTATCCAGGGTGAGTGGAGTCAGATAGAAAAAAAAGTAATTTCTGAGATTGTTGATGCAGTTGCTCAAGGTGATTCCGTAATCTATGACGCTACCAATGCCAAGCGTGTATGGCGGATGGATTTGTTAAAAAAGCTAAATTCATCTGTTGCTTGCCTTGCAGAGCATCGGGAAGAGGTTTTGTGGATGGGGTGGTATTTGCAAACCCCGATTGCAACTTGCAA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 12078-10666 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBKM01000382.1 Nostoc sp. WHI contig-16000031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================ ================== 12077 36 100.0 35 .................................... TAGAAATCTACCCCGTTGATTGAAGTAATAGAAAT 12006 36 100.0 35 .................................... ATCTCAGAGCGGGTCATAACGCCTAAGAATTCGCA 11935 36 100.0 37 .................................... CATTTAACTTTGAGGGCATCGTGGGTTTGTTGAGATA 11862 36 100.0 37 .................................... TAACTATATCTTCTCCAATTACTTCAGAGATAACGTT 11789 36 100.0 35 .................................... GATTTGACACTTGTGCAATGATATAATAGACATAT 11718 36 100.0 35 .................................... GTGGTAGCCATTTGATAAAGGGTTTTGCTGATTGT 11647 36 100.0 48 .................................... CTTCACAATAACTTATTTTTGTGATTATCATGACTAAACTTTTAGTAG 11563 36 100.0 39 .................................... TTGTCTACCTCAGTGATGCGTCGCCCTAATGCTAGTTTG 11488 36 100.0 40 .................................... AATAGTACAAGTCTCTTTAGCGCGAAGCGTTCAAAAAAAA 11412 36 100.0 43 .................................... ACATTCCAGAGTGCAATACTTAACTTAGCGGGTTCACCTCCGG 11333 36 100.0 38 .................................... TGTTTTCAGCCTGCTCAATAATCCATTTATCGTTTTTT 11259 36 100.0 46 .................................... TAGTGATATTTTCATCTAAGTCTTCTCTGTGTTTAGCATGTAGAAG 11177 36 83.3 140 ............................CA.C.CTT GCGGCAGCTATGAGGTACATCCTAAAAGCTGAAAGCGATGATAGGAGAGAGGCAAGAAGAAAACTATATTGCATAATAGCCGGAAGCGCTGTAATGGAAACTGATCGATATATTTAGCTGCTCCGATATGTTCAAGAAAT 11001 36 100.0 39 .................................... TTAATTAGTTTAAGTATCTGTATAGTTGATGTATGTTTA 10926 36 100.0 38 .................................... CCTTGATCAGCGTCGCGTACCTTTTTAGCTTCAGAGTT 10852 36 100.0 38 .................................... GTTTCTAATTTATCAGTATCTCTAAAGCTTGTAAGGTC 10778 36 100.0 42 .................................... ATGCAAGTTGAGCCACAAGCATACCCTTTCTCGCACTTTCTT 10700 35 75.0 0 A..........AATC.....A.........T-...T | ========== ====== ====== ====== ==================================== ============================================================================================================================================ ================== 18 36 97.7 45 GTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAC # Left flank : TTAATTTGGGATGGTTGCAAAAAATTCACTACAGCATCACCTGCTGTAGCGTTCACAAAGCTGGCAATGGTAATCAAGATTGTATTGATGATTACTGCTGCTAGCCCCAAAGGTGCTATCAACAGGATAATTAAAGTGATAGCACCGTTGAGTAAGGCTATTCCAAGATTACGGATTAATGCAGCGCGGGAAGAGATATACATAAATTATGATGTTTGATGCTTCTTTCTTTTTTATCCATACTTCAAAAGTAGGTGCTGGTTTGAGATCCTGCTAGTGGTTTCATGCGAATGACAAATTTACTAAGTTTTTTAATTTACCTGCGGCGGGGTCGGCAAAACTTGGAAATGCCTATGTTCTCGTTGACCCTGCCGATGTCTCTCTGTACAAGGATTTCAGGGTTTTTATATTTCCTTGTAAAGGTAAAAATTTCTCTATTCACCGACCCCGCCGCAAATGGCATCTGGACATCAGACACCATAAGGGTTTAAATAAGAGGG # Right flank : TAAGAGTGGAATTTCTCCAAATAAAAAGGTCTGGATATTTATATCCAGACCTTTAAAAGTATTTTTAAATATATGTTTTTATTTCTCACTGCTCATAAACCCTAACAATCGCCTCACCCATTTCCTTAACCTTAACCAGCAATTTCTCTGGTTGCACTACTTTCACATTACCGCCAAAACCAACAATCCACCGCAGAAACTCCACATCACCCAAATACCATATAGGCAATACCACCCGAAAGCGATTGGGAAACTGTTTATTTGTAGTTTTCTTCAGGCAGAAAATTGACTTAGGTAACATTAATCTTCCGCCCTCTACAGGTGGAGACATATTCATTTGTCTTGCAGGGAATCTCTTAGTGCCTTCAGCAATAAACCGGAATATAGCGTCGTTAAACCACAGTTCCACTGTCACACAAGCCTGAGAACGTTCTTGTTTATCGTGGCTGAGAAACTGACGTTGGTCACTCGCACTATACCCCAAAAAAATCCCGGCGCTA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //