Array 1 126673-126313 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVF01000004.1 Streptococcus oralis subsp. tigurinus strain AZ_8 S.tigurinus-AZ8_Contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 126672 35 100.0 30 ................................... AAAATTGAACCAATTATAGTCAATGCAATC 126607 35 100.0 30 ................................... CCTTCCTTATTCTCTAAAACGGCATCTTGT 126542 35 100.0 30 ................................... TTCGACAATCATAGCTGAAGCTGAAGGGTC 126477 35 100.0 30 ................................... TTGTTCATCGATGTATGCCAATAAGCAAAA 126412 35 100.0 30 ................................... AGAAATAGAACGAAATAAAATTATTTTATA 126347 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 6 35 100.0 30 GTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Left flank : GTTAACCGTTACCGTGAGTTAATCAACTCTCTTGGACTTCGTCGTTAATCTTGCGTCTAAAACGTTTCTATACTTCGTTGGCTTCGACTCGATGTACCATTAGTACAATCTTCGCCTCGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGATTGGAGCTCTCTGATATTCAGAGGGCTTTTTATGTTGTCACCTTGCCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAACATTTTTGTACAATCTTCGGCTCATCGCCTAGTCTATAAACGGTTTATCCGGCAAGAATCACGATGCAGAGGGCGTTAAAAATCCGTATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACACAAGGAGTTTCATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGACTTCAGAGAGCTTTTTTATTGAG # Right flank : CTCAAATAGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAATAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTTCCTGAAGAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 484444-487116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVF01000001.1 Streptococcus oralis subsp. tigurinus strain AZ_8 S.tigurinus-AZ8_Contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 484444 36 100.0 30 .................................... TGTATCCTACGGTATGTTCAGCGAGTGCCT 484510 36 100.0 29 .................................... TGGGTGGCAATAAGTACAAGCCTAGCCAA 484575 36 100.0 29 .................................... ATAATAAAAAGGAGATAAACAATGAAACA 484640 36 100.0 30 .................................... GTTGAGTGAGTGGATCGAGTTCTTCAATTT 484706 36 100.0 30 .................................... TAAAACGATTAGTCAGCTAGGAGGATGAAA 484772 36 100.0 30 .................................... TCTTTCATAAAATACCAACCATTTTCAGTC 484838 36 100.0 30 .................................... CAAGCTGGGTCAAAAAGAAACCGACGGTGT 484904 36 100.0 30 .................................... ATGGTAAAGATGTATATGTAACGACACTTG 484970 36 100.0 30 .................................... ATGCTCGTGCAGCTCTAGTACTTACATCAA 485036 36 100.0 30 .................................... ATTATCGCTTGATTTTGAACGGTACACCCA 485102 36 100.0 30 .................................... CTTTGGAATCTATTAGCTAACATTTCATCT 485168 36 100.0 30 .................................... TGAAGCGCTTAGAATCCCTCACAGACGATT 485234 36 100.0 30 .................................... CAGCAAGTTACAAGATGACGCTGGTTATCT 485300 36 100.0 30 .................................... CTGGCAAGTCTGGTATTTCATTTACTCCTA 485366 36 100.0 30 .................................... ATTATTTGACTTTATTATAACACAAAAAGA 485432 36 100.0 30 .................................... CTGTTGTAGCTTAAGGAGGTAGCGTATGAG 485498 36 100.0 30 .................................... ATCGCTTCTCTAAAATTGCTACAGAAGCTA 485564 36 100.0 30 .................................... TCTGAGCCATTAGTTGCCCTCTCTTTCGTA 485630 36 100.0 30 .................................... TTATGCTAGTGAAGTTCAGAAGAATTTGAA 485696 36 100.0 30 .................................... TAAATATTTTAGAAGAAAAGTTAGGATATA 485762 36 100.0 30 .................................... TAGATATCTTCAAAATCAAGTCAAAAAGGG 485828 36 100.0 30 .................................... TCTTGAATTGATCAATGAGTTAGTAAATCC 485894 36 100.0 30 .................................... AAAAATTGGAGAAAACAGCATGAATGAACA 485960 36 100.0 30 .................................... TTTCACAACCTTTGCCAAAGCAGTTTCTCA 486026 36 100.0 30 .................................... ATGTTCTGCCATTCGTCTACTATCAGCACA 486092 36 100.0 30 .................................... TACGAAGAAAAGAGAGGAAAAGTAAGATGA 486158 36 100.0 30 .................................... TATGCCTTCTTTTCGAAATTATCACGATTT 486224 36 100.0 30 .................................... TATACCAAATCATTGAGTTATCACCCTCGA 486290 36 100.0 30 .................................... GAAAAAACGGATTTTACGGATCAGGAGAAA 486356 36 100.0 30 .................................... TAATTGGTTGTATGTAATTATTCCAACCTT 486422 36 100.0 30 .................................... AAGATAGATGAAGGAGAAATCAAAATGAAA 486488 36 100.0 29 .................................... TTAATGGTCACCCACTGACCGACGTCCAG 486553 36 100.0 30 .................................... GATATAGTTTTTTCGTTCCGTCCGATTGCT 486619 36 100.0 30 .................................... AAAAATCCTTCAACGCCGTTATCATCGATT 486685 36 100.0 30 .................................... TTACATATATTTACATCAAATTCCTATATA 486751 36 100.0 30 .................................... AGTAGATACGAACATCGGAAAATCCGACTG 486817 36 100.0 30 .................................... TCCTCTCAGTGGACAAAGTCAGTCAATTAG 486883 36 100.0 30 .................................... CGACGGTAAACCATTATCAGACGACGATGT 486949 36 100.0 30 .................................... ATAGAGATTTTCAATTCGTTTGACCTCTAT 487015 36 100.0 30 .................................... TTATTTTCAAAGGGTTAGATAACCCTGAGA 487081 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAAAAAATGGAGTTTCTTACCAATCATAGTAATTCATTATATATTGTGTTGTTTCCTTCAAATGAAGGTTACCTTCATGTAACTAAAGAAGTAATCGAGGAGATTAATATCGTTTCTGATTATGCCGATCATTTTTATTCTTTAGAATTTATGTATGAACGATTTAGTAATCAATATCCAATAAATCAAATACCTGATGAACAAGACTTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCTGACATTCTCCACATGAGTTTATCTATAGAGGATCAAGTAGTCTTGAAAATTTTGAATAATTTGTATCAGTATGAAATGAAAACAAAATTTCGTATTGAATCAATCAATCCAATGTTATTGAAATATTTGAAAGAATAGTATTGACGAGTGGGATTTAAGAATTTATAATATTTTTGAGGGTACAAAAATCAAAATTGACGGATTTGAG # Right flank : CTGCAATTCAATTTATTAATTTACTCTCATTGTGATATATTCATACAAAACCCGCTTAGCTGAGCGGGTTTTATCTATTCTTACTTTTTTACAATACCCACGTTCGGATAGCATGGGCAACGCCAGATTCATCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGAGTTCTGGATTTCCATTTTCCATGACAACAGGATTACCAACGACTTCCAGCATGGCACGATCATTTTCCTCGTCACCAATCGCCATGGTTTCATTTGTGGTCAATCCGAGTTTTTCAGCTAGGTGAGTGATTGCTGAACCCTTGTCTACATTCTTTTTAAGGAGTTCAAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGTATCTTTTCAATCGCAGCATCGAGAATTTCTGGTTCATCGATAAACATACATTTGACAATTTCCTTGCCAGCCATTTCTTCAGGAGTACGGTAGAAGATGGGCATGCTGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //