Array 1 45866-47046 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRA01000002.1 Staphylococcus pseudintermedius strain MAD652 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 45866 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 45938 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 46008 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 46080 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 46150 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 46222 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 46295 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 46368 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 46439 36 100.0 38 .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 46513 36 100.0 37 .................................... TAGACCATTTACCTCATTATATTTATAGTCTTTATTA 46586 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 46657 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 46729 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 46801 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 46872 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 46941 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 47012 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 99.2 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 56009-55770 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRA01000002.1 Staphylococcus pseudintermedius strain MAD652 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 56008 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 55939 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 55865 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [55857] 55793 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //