Array 1 228385-226832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085040.1 Streptomyces sp. WA1-19 plasmid pcz, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228384 29 100.0 32 ............................. CTACTGGTCCGCTGGGCCACCGCCGAGGAACT 228323 29 100.0 32 ............................. TTCACCAGGGCGGTGAGGGTGTGGACGCCGGT 228262 29 96.6 32 ...........C................. GCGTCGGAGGCGCAGCAGAAGTACGACGATGC 228201 29 100.0 32 ............................. CTCGAGGCCACGAAGAACGACGGCTCGACCCG 228140 29 100.0 32 ............................. GGCCCGGTGTGCGCGACCGACCGCATCCGCGC 228079 29 100.0 32 ............................. GCGTACATCCCGCTCGGCGCGAACAAGCGCGA 228018 29 96.6 32 .........A................... GTGTCCATGCCTCTCGGCGTGTACGTGACCGC 227957 29 100.0 32 ............................. CTGAAGGACCGGGTGTGCCCCACCGTCCCCAG 227896 29 100.0 32 ............................. GCCACCACCGGCACCGGCGCCACCGGCGGGTC 227835 29 100.0 32 ............................. TCCTCGGCGGTCTTGTTGGGGGACAGGTAGTA 227774 29 100.0 32 ............................. TCCCCGGTGACGGTGTCGAGGGGACTGCCGGT 227713 29 100.0 32 ............................. ACGGCCGGGTCGTAGGCGCCGCGCACGATGCG 227652 29 100.0 32 ............................. CCGTACGCGGCGGGTGGGCCAGGTGAGTTGGT 227591 29 96.6 32 ...........A................. GCGGTGTCCAGGTCCCGTACCTCGGCCAGGCT 227530 29 100.0 32 ............................. CAGCCGATGAGGTACCGGACGACCGCCCAGGC 227469 29 100.0 32 ............................. GCGAAGGAGCTGCTGGAGCCGGGCCGGGCGGT 227408 29 100.0 32 ............................. GCGCGCTCTGCGGCGGCGGCCGGGTCCGTCTC 227347 29 100.0 33 ............................. GTCCCCCTGGAGCAGGAGTTGCGGTTCGTGGAC 227285 29 100.0 32 ............................. GCGCGCTCTGCGGCGGCGGCCGGGTCCGTCTC 227224 29 100.0 33 ............................. GTCCCCCTGGAGCAGGAGCTGCGGTTCGTGGAC 227162 29 96.6 32 ............................A CCCCCTCGACTACCTGGTGCTGCTCCACGCCC 227101 29 100.0 32 ............................. CCGATGGCCACCGTGCCGGTGGTGCAGCCCTG 227040 29 100.0 31 ............................. CGGTTCGTCATGGTCCTCTCCCGGTGCGGGG 226980 29 93.1 32 .G....................C...... CTGGCCCGCGCCGACAGCCACCTCGCCGACCT 226919 27 89.7 32 ...T........--............... ACCATCGGGCCGCGGGCGCTCACAAGGTCACC 226860 29 86.2 0 ...T..................C....AT | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCTCGACGCTCTCCTCGACGCCCTCCAGCCCGGACGCACCCTCCACTACCGCTGCGTCGCCAGCCCCGTCAGAAAACCCGGCGCCGAAACCCGCCGCCTCTACCAACTGCCTCCCGTCGTCGCCCTCTCCGGCACCGCCGCCGACGAATGGTGGCTCCGCCAAACCCAAACCGCCGGCCTGACCCCCACCACCCACCACTCCACCCCCCTCGACACCATCCGCGGCCAGCAACCCGACAAACACGGCCACCGCGACCACAACCGCATCCGTCACGCCCGCACGCGCTTCGACGGAACCGCCACCATCACCGACCCCGCCCGCCTACGCCACACCATCCTCAACGGCATCGGACGCGCGAAAGCCTACGGCTGCGGTCTCCTCAGCATCACCCCCGCCCAGGACACCGCATGAAAGCGACCAACGCCCGCCGCCACCTGGCCAAACCCACCCTCGCCATGCTGCCCCGCATCGGCGACTCCCTGTCCTTCCTCTACCTCGA # Right flank : GCCAGGCCAGAACCTCCAAGGCATCCTTTCTGCACGTGCGGGGTAATTCAGGCGGGTCTGTATGTGACGGGCTGCGTACTCGTTCGCTCCGGGCATGCGGAGTGCTTCGGTATCAGGGGCCGCCCCAGCGCGACATCATGTCGGCTCCGCGTCTGCCGGGCTGTTCCGCCATCAACCGCCGCGTTTCACACGCCGTTGGCACCCACCTTCTTTTCTAGGGGGCTGCGATCCGGCTGAAGGGCACCGCTCGCACGGCAGCCCGCTGCCTGAGAGGGCCGATTGATGAGTTCTCCTGTGCTGGCTTGCCCTTGCCGTGTTGCCTGACTTCGGGCAAGCCTGCGGCAACTGCTTCTGTGGTGGGGGGGCAAGCCTTTGGGCAAGCGGCAGTGTTGAGAGTGAGGGGCACATCGTTCTCCAGGAGGTGTGCCGTGCACTACGGACCGACACAGACGCTGTACGCCAAGACGCTGACCACGATCAGGGCGGCCACCACACGACCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237031-237731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085040.1 Streptomyces sp. WA1-19 plasmid pcz, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237031 29 100.0 32 ............................. CCGGTCCCCCGGCCGCTGACCCGAACGCTGAC 237092 29 100.0 32 ............................. CGCACGGCTATGTCAAGCGAGTCCGCACCTTC 237153 29 100.0 32 ............................. CCGTCACCGTGCCGGGCCGTCACCCTCGGCCC 237214 29 93.1 32 AA........................... TCAGCGGATCATCACGGACACGGCGCGGGCTC 237275 29 96.6 32 .......................C..... TGATCCGGTCGGCCCCCTGAACGCCGTGGGTG 237336 29 93.1 31 ...........................GT CGATACGATCCATCTCAGGATCGCTCCCTTC 237396 29 93.1 32 .......T...............G..... TCGTCGATGGACGGCAGGGTCGGCATGGGGCC 237457 29 100.0 32 ............................. ATCCGGTACGGCAAGCTCAAGGCGAGGGCCGA 237518 29 100.0 32 ............................. AAGCTGGACGGGTACCGGGTCCTGGCCTTCCT 237579 29 100.0 32 ............................. GCTTCGACGGCGAGGCGGATGCCGACGGCGCG 237640 29 93.1 32 CC........................... GCACCCCGTATGCCTGGGGCGGAGGGACCGTC 237701 29 82.8 0 ...................CCCCG..... | T,A [237717,237727] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.0 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGCCGTACACCGCGTCCCCGTCCAGTACCTTGAACGCCTCCGGGACCTTCACCACGAAGGGCGGCGTGATCTTCCCGAGATCATGAAGCCCCGCCCAGAACCCCGTCACCAACCTCGCCTCCGCCACCGACAGCCCCAACTCAGCCGCGATCCGCCGGCGCATCCCTTCGCTCAACACCTCGTCCCACAACACGAGGAACACCGCAGCCGAATCCAGCAAATGACAGATCAACGGATACAGGCCAGGAAGCCCATGCTCTTTCCCCCAGAACCGGACATCCAGCGCGAGGCGCTCACCATTCGACATGGGGGCGTCATAACACCCCTCACCGACAACCCCTCCTGACCTGCAGTTACACATGGCTAGCCGCACCCGTCCGTCCGCAAAATCCGCGATAAGGTCCGCTACGTGACCCATCCCCAACCCACGCGCCCCTCCCAGCCATCAGCCTTCGTTCAAGAGATCGCAAAGGCCCTATAACGCCCCAGGTCAGTAAGG # Right flank : GCGGGATACTTCTAACGCGAGGCCCGCGAACGGGCCGAGCTCGAACGTTTGCTCTACATCTGCGGGGTGCTTCCCGGGTCTCCGCCGGTCGCCGTTCGACCGCTAGGCGCTCCCTGCGGGGTTCAGCTGCGGTCCGGTTCAGGCTGCCATTCGCAGTTCGGTGCGGGTTCGCTGGACAAGCTCCCGGACGGCTGGCTCACGCCGCCACGGGGCGAGGGCGGCGTTGAACTCGCGGAGGTAGTCCAGGGCCCGGGTCGACTGGACGCGGGCGAGGATGTCGACGGCCCGGTGGCCGAACCGTAAGCCTTGTTCGAGGTCCTTGGCCTGGAGGTGGGCGGTCCCGACGATGGCCAGGCGCATGCCGACCGAGCGGGTGAACACGCCCGGCTGCATGGCGGCGGCCTGCGCGTTCCAGGCCAGTGCGGCCTTGGGGTTCTTGAGGTCGCGGAAGACCTCGGCGGCGTCGGCGGAGAGCCGGGCGTGGTGATAGAAGTCGATCC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 266941-265467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085040.1 Streptomyces sp. WA1-19 plasmid pcz, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 266940 29 86.2 32 C..T....T..............G..... CGATCGTGACCCGCGAAGGCATCCGGGCCGCC 266879 29 100.0 32 ............................. CCGAGGACGACTTTGCGGGCGCCCATGGTCTC 266818 29 100.0 32 ............................. TGACGCATGGTCAGGGTCAGCATGGCCAGGCC 266757 29 100.0 32 ............................. TCGTACCGGGCCTGGGACATGATCGCGTCGGG 266696 29 100.0 32 ............................. GACTGGAGGATGACGTAGGGGGTGATGCCGCG 266635 29 96.6 32 ........................T.... GCGATGGTGACGTCGGCGGTAGGGCCTTGGGT 266574 29 100.0 14 ............................. TCGCAGATGGCGGC Deletion [266532] 266531 28 79.3 32 .GA.G.C..-..............A.... GCGGTGATGGTCGCCGTGGGCGGAGACGACTT 266471 29 86.2 32 ..........T.T..A.......G..... CCATCCGGCCAGGTGACCGGCCCAGGGGATTT 266410 29 89.7 32 ..........T....A.......G..... CAGCCGGGGGACATGGCGGCCGCCTGGCGGCT 266349 29 89.7 32 ..........T....A.......G..... GTACTGAGGCTCAGTGAGCCCATAGACTTCTG 266288 29 100.0 32 ............................. GTGGGCAGGCCCATCGCGAGGGCGGCCGACTC 266227 29 100.0 32 ............................. GTGGCGACGGCGGCGGCGACGCCGATGCACGC 266166 29 100.0 32 ............................. TAGGCGCCCCCGCCCCGGCCCGCAGTCGCGCC 266105 29 100.0 32 ............................. GGATCGGCAGCTTCCCAGGCTTCGGAGAACTC 266044 29 100.0 32 ............................. CCGACGCCGCCGGGCCTACTGGCCGGCCGGAC 265983 29 100.0 32 ............................. GCGATGGTGACGTCGGCGGTAGGGCCTTGGGT 265922 29 89.7 32 ..........T....A.......G..... CGGCCGGGGGACATGGCGGCCGCCTGGCGGCT 265861 29 89.7 32 ..........T....A.......G..... GTACTGAGGCTCAGTGAGCCCATAGACTTCTG 265800 29 100.0 32 ............................. TACCTGGTCCGGCACCAGCCGCCACCGGCATA 265739 29 93.1 32 CC........................... ACCGTGACGCTTTCGAACCACCTGCGGATCGA 265678 29 100.0 32 ............................. GTGGAGTGCCCGCGACCACTGGCTCACCCGCC 265617 29 100.0 32 ............................. CTGAACGCGGGCGGCGGGCGCCGTGATGGCCG 265556 29 89.7 32 ..........T....A.......G..... CTCACCGCGATCCTCGGTGTCGGCCCGGTCAG 265495 29 89.7 0 ..........T....A.........T... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 95.2 31 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGGTGCCCATCGAAGAGACCCCGCTGGTCGACGTGCACGATCAGGATGTCGTGGCTGTCGATCACCTCAGAGATGCCCCGGGTCTCGATCGTGTCCGACCACGCGTCCAGGTTCCGGCCGAACCACTCTGGCAGCCCGCACGGTCCGCTCACCGCGTCCCAGAAGTCGTTGAGTGTCTCGATCAGCCGACCACGCAGGTCAACGATCAGCTCTCTGTCCGTCATCGCAGCAGACTAACCAGCCCAACCACGGGTCACCGACCGTTCAAAGAGACAGGCTCTAGCCCCGCACTCGCGAGCTGCTCTGCAGTTCACGTTGGCGCCGTCGGCCAAACTGAAGTGGGCCGCGCGACTGCGGGGATTGCTTCCGGTGAGAGTGGTCTCGAGAGGCGCGATGCAAGTGAATGAGAACCCGCTGGCTTCGCGATAACGTTGCAGGTCAGCAAGTGTCGGCCCCGCACCCGCAGGGATGCTCCCGCGCCGCCCTCGACCGCGACAAC # Right flank : TCGATGACGGCGCGGGGTCGTGGCGGTCGCCCTTTGGGGCGAGGATCGCAACGGCCGCTCCCGGTGCTCCGTGCACGGTCGTCAGCGGTTGTGGCGGTCGTCCTCCGGGGCGACTGCGGCTCGCAACGTCTTGAAGGACGGTGCCGACATGGAGCGCGTGACGGATGGCGGTCGCCCTCCGGGACGGCCGAGGATCGGCGGATGGTCTCCCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGCCGTGCATGCTGGCAGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCGCGTCGGCCCCGCACGCGCGGGATGCCTCCACTCCGTGCCCCCGAGGCGCCATGCGGTGGGTGATCTTGGCGTACGCCTCGGCCCGGTCCATGCGCGGGGGCTCGGTGGTCGCCGGGGTCATCCGAAGACCTCCACGAGTCGGTGGGTCACCGGTTCCCGGAGGAGGCGCTGGCGCCGGAGGTGGTGGTTCCAGGTCTTGCTGTCGCAGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 274594-273891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085040.1 Streptomyces sp. WA1-19 plasmid pcz, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274593 29 100.0 32 ............................. CCGGTCCCCCGGCCGCTGACCCGAACGCTGAC 274532 29 100.0 32 ............................. CGCACGGCTATGTCAAGCGAGTCCGCACCTTC 274471 29 100.0 32 ............................. CCGTCACCGTGCCGGGCCGTCACCCTCGGCCC 274410 29 93.1 32 AA........................... TCAGCGGATCATCACGGACACGGCGCGGGCTC 274349 29 96.6 32 .......................C..... TGATCCGGTCGGCCCCCTGAACGCCGTGGGTG 274288 29 93.1 31 ...........................GT CGATACGATCCATCTCAGGATCGCTCCCTTC 274228 29 93.1 32 .......T...............G..... TCGTCGATGGACGGCAGGGTCGGCATGGGGCC 274167 29 100.0 32 ............................. ATCCGGTACGGCAAGCTCAAGGCGAGGGCCGA 274106 29 100.0 32 ............................. AAGCTGGACGGGTACCGGGTCCTGGCCTTCCT 274045 29 100.0 31 ............................. GCTTCGACGGCGAGGCGGATGCCGACGGCGC 273985 29 96.6 32 .C........................... GCACCCCGTATGCCTGGGGCGGAGGGACCGTC C [273981] 273923 29 89.7 0 ...................CC.C...... | G,CC,T [273893,273900,273907] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.9 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGCCGTACACCGCGTCCCCGTCCAGTACCTTGAACGCCTCCGGGACCTTCACCACGAAGGGCGGCGTGATCTTCCCGAGATCATGAAGCCCCGCCCAGAACCCCGTCACCAACCTCGCCTCCGCCACCGACAGCCCCAACTCAGCCGCGATCCGCCGGCGCATCCCTTCGCTCAACACCTCGTCCCACAACACGAGGAACACCGCAGCCGAATCCAGCAAATGACAGATCAACGGATACAGGCCAGGAAGCCCATGCTCTTTCCCCCAGAACCGGACATCCAGCGCGAGGCGCTCACCATTCGACATGGGGGCGTCATAACACCCCTCACCGACAACCCCTCCTGACCTGCAGTTACACATGGCTAGCCGCACCCGTCCGTCCGCAAAATCCGCGATAAGGTCCGCTACGTGACCCATCCCCAACCCACGCGCCCCTCCCAGCCATCAGCCTTCGTTCAAGAGATCGCAAAGGCCCTATAACGCCCCAGGTCAGTAAGG # Right flank : GGATACTTCTAACGCGAGGCCCGCGAACGGGCCGAGCTCGAACGTTTGCTCTACATCTGCGGGGTGCTTCCCGGGTCTCCGCCGGTCGCCGTTCGACCGCTAGGCGCTCCCTGCGGGGTTCAGCTGCGGTCCGGTTCAGGCTGCCATTCGCAGTTCGGTGCGGGTTCGCTGGACAAGCTCCCGGACGGCTGGCTCACGCCGCCACGGGGCGAGGGCGGCGTTGAACTCGCGGAGGTAGTCCAGGGCCCGGGTCGACTGGACGCGGGCGAGGATGTCGACGGCCCGGTGGCCGAACCGTAAGCCTTGTTCGAGGTCCTTGGCCTGGAGGTGGGCGGTCCCGACGATGGCCAGGCGCATGCCGACCGAGCGGGTGAACACGCCCGGCTGCATGGCGGCGGCCTGCGCGTTCCAGGCCAGTGCGGCCTTGGGGTTCTTGAGGTCGCGGAAGACCTCGGCGGCGTCGGCGGAGAGCCGGGCGTGGTGATAGAAGTCGATCCAGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 283240-284792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085040.1 Streptomyces sp. WA1-19 plasmid pcz, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 283240 29 100.0 32 ............................. CTACTGGTCCGCTGGGCCACCGCCGAGGAACT 283301 29 100.0 32 ............................. TTCACCAGGGCGGTGAGGGTGTGGACGCCGGT 283362 29 96.6 32 ...........C................. GCGTCGGAGGCGCAGCAGAAGTACGACGATGC 283423 29 100.0 32 ............................. CTCGAGGCCACGAAGAACGACGGCTCGACCCG 283484 29 100.0 32 ............................. GGCCCGGTGTGCGCGACCGACCGCATCCGCGC 283545 29 100.0 32 ............................. GCGTACATCCCGCTCGGCGCGAACAAGCGCGA 283606 29 96.6 32 .........A................... GTGTCCATGCCTCTCGGCGTGTACGTGACCGC 283667 29 100.0 32 ............................. CTGAAGGACCGGGTGTGCCCCACCGTCCCCAG 283728 29 100.0 32 ............................. GCCACCACCGGCACCGGCGCCACCGGCGGGTC 283789 29 100.0 32 ............................. TCCTCGGCGGTCTTGTTGGGGGACAGGTAGTA 283850 29 100.0 32 ............................. TCCCCGGTGACGGTGTCGAGGGGACTGCCGGT 283911 29 100.0 32 ............................. ACGGCCGGGTCGTAGGCGCCGCGCACGATGCG 283972 29 100.0 32 ............................. CCGTACGCGGCGGGTGGGCCAGGTGAGTTGGT 284033 29 96.6 32 ...........A................. GCGGTGTCCAGGTCCCGTACCTCGGCCAGGCT 284094 29 100.0 32 ............................. CAGCCGATGAGGTACCGGACGACCGCCCAGGC 284155 29 100.0 32 ............................. GCGAAGGAGCTGCTGGAGCCGGGCCGGGCGGT 284216 29 100.0 32 ............................. GCGCGCTCTGCGGCGGCGGCCGGGTCCGTCTC 284277 29 100.0 33 ............................. GTCCCCCTGGAGCAGGAGTTGCGGTTCGTGGAC 284339 29 100.0 32 ............................. GCGCGCTCTGCGGCGGCGGCCGGGTCCGTCTC 284400 29 100.0 33 ............................. GTCCCCCTGGAGCAGGAGCTGCGGTTCGTGGAC 284462 29 96.6 32 ............................A CCCCCTCGACTACCTGGTGCTGCTCCACGCCC 284523 29 100.0 32 ............................. CCGATGGCCACCGTGCCGGTGGTGCAGCCCTG 284584 29 100.0 31 ............................. CGGTTCGTCATGGTCCTCTCCCGGTGCGGGG 284644 29 93.1 32 .G....................C...... CTGGCCCGCGCCGACAGCCACCTCGCCGACCT 284705 27 89.7 32 ...T....--................... ACCATCGGGCCGCGGGCGCTCACAAGGTCACC 284764 29 86.2 0 ...T..................C....AT | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCTCGACGCTCTCCTCGACGCCCTCCAGCCCGGACGCACCCTCCACTACCGCTGCGTCGCCAGCCCCGTCAGAAAACCCGGCGCCGAAACCCGCCGCCTCTACCAACTGCCTCCCGTCGTCGCCCTCTCCGGCACCGCCGCCGACGAATGGTGGCTCCGCCAAACCCAAACCGCCGGCCTGACCCCCACCACCCACCACTCCACCCCCCTCGACACCATCCGCGGCCAGCAACCCGACAAACACGGCCACCGCGACCACAACCGCATCCGTCACGCCCGCACGCGCTTCGACGGAACCGCCACCATCACCGACCCCGCCCGCCTACGCCACACCATCCTCAACGGCATCGGACGCGCGAAAGCCTACGGCTGCGGTCTCCTCAGCATCACCCCCGCCCAGGACACCGCATGAAAGCGACCAACGCCCGCCGCCACCTGGCCAAACCCACCCTCGCCATGCTGCCCCGCATCGGCGACTCCCTGTCCTTCCTCTACCTCGA # Right flank : TGCCAGGCCAGAACCTCCAAGGCATCCTTTCTGCACGTGCGGGGTAATTCAGGCGGGTCTGTATGTGACGGGCTGCGTACTCGTTCGCTCCGGGCATGCGGAGTGCTTCGGTATCAGGGGCCGCCCCAGCGCGACATCATGTCGGCTCCGCGTCTGCCGGGCTGTTCCGCCATCAACCGCCGCGTTTCACACGCCGTTGGCACCCACCTTCTTTTCTAGGGGGCTGCGATCCGGCTGAAGGGCACCGCTCGCACGGCAGCCCGCTGCCTGAGAGGGCCGATTGATGAGTTCTCCTGTGCTGGCTTGCCCTTGCCGTGTTGCCTGACTTCGGGCAAGCCTGCGGCAACTGCTTCTGTGGTGGGGGGGCAAGCCTTTGGGCAAGCGGCAGTGTTGAGAGTGAGGGGCACATCGTTCTCCAGGAGGTGTGCCGTGCACTACGGACCGACACAGACGCTGTACGCCAAGACGCTGACCACGATCAGGGCGGCCACCACACGACC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1576056-1576209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085039.1 Streptomyces sp. WA1-19 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 1576056 23 100.0 43 ....................... ATCAAGGGGGTGCTGGGCGGTGCCGACCTCGCGGTCAAGGACT 1576122 23 100.0 42 ....................... CTGTTGGGGGTGCCGGCCCGACGCGCCCTGCCGGTCAAGGAT 1576187 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================== ================== 3 23 100.0 43 GGCCTCAAGCGCCGGCCGGGCTG # Left flank : TTCGAGCGGTGGCGCGCCACCTCCTGGAGCCCCACCACGCCCAGCACCTCGTCCACCCGGCGGGCCGGGATGCCGGAGAGCTGCGCGAGGCAGAGCAGGTGGTTGCGGGCCGAGCGGCCGCCGTGCACCGCCTTGGCGTCGAGCAGGGCGCCGACCTGGCGCGGGGCGTTCGGGACGCGGCGGTAGGGGAGGCCGCCGATCGTGACGTGGCCGCTGGTGGGCTCGTCCAGGCCGACGATCATGCGCATCGTCGTGGACTTGCCCGAGCCGTTCGGGCCCAGGAAGCCCGTCACCGTGCCGGGCCTCACCTGGAAGGAGAGGTCGTGCACGGCGGTCTTCGCGCCGTAGCGCTTCGTCAGGCCGATGGCCTCGATCATGTGCTCCCCGCACCCGTCGACAGAGTTCCTTGCCGGGGTTGTCCCCGTCAACGTAAGGAGGATAGTCACCGGCGTTCGGTTCCGGCCAAGCGCGAATTCCCTCCCGGGGTGGGCTGGGGGGTG # Right flank : GTTGATGGCCCGGCCGATTGAGGCCCCCCGAGGGCCAGGCCCGGCCGGCTACGCGTCCCGGTGTCGCAGGAGGGCGTACCCGATGGCCAGGGCGGCGATCACCCAGAGGGCCATGATGCCGAGGCCGCCCCAGGGGCCGTAGGGGGTGTCGTCGTTCAGCGGGGCCACCACCTGCATGATCTTGGAGCCGGCCTGGTCGGGGAGGAAGCGGCCGATCTTTTCGGTGGCGGAGACGGCGCCGAGGATGGAGGAGACGAGGAAGAAGAAGGGGACGAGGATGCCGAGGGAGAGCATGGGGGAGCGGAGCATCGCGGCGACGCCCATGGAGAAGACGGCCATGAGGGTCATGTAGAGGGCGGCGCCGATCACGGCCCGGAGCACGCCGGGGTCGCCGATGGAGGCGGCGAGGGTGGGGCCGAGCAGGGCCTGGCCGAGGAAGAAGGTGGCGAAGGTCGTCACGAGGCTGACCAGCAGCGCCAGTACCGTGGCCACCGCGACCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //