Array 1 11155-8141 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRA01000046.1 Virgibacillus necropolis strain DE0129 NODE_46_length_26307_cov_179.628448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 11154 32 100.0 34 ................................ TTTTTTTGTACTCTTTGATAATATAGGCTAGTAT 11088 32 100.0 36 ................................ TGCTCTCCGAATGCCTCAAATTATAAGTTTTATTAA 11020 32 100.0 34 ................................ AAATTTAGTTATTCCTAACCCTTGTAAGTCAAAC 10954 32 100.0 34 ................................ AATTTTGATCCAACTATTTTTATGAATGGTTATA 10888 32 100.0 35 ................................ CTATAACTGGAGGTTATACAATGTTAACGGACAAA 10821 32 100.0 33 ................................ CTGAACAAGACTTTAAAAAATTGGTTCATGCTG 10756 32 100.0 33 ................................ AGTCCTAATAATACTTATCTAATACAAGACAAA 10691 32 100.0 34 ................................ TTTCCATTTGAGGAACAATTGTACTGAACATATT 10625 32 100.0 37 ................................ TCTAGGTTGTCAGCCAAAAGGCTTTATTAAATATGAT 10556 32 100.0 33 ................................ TACAATATGAAAGATGCGTTGAAACGTAAAGAA 10491 32 100.0 34 ................................ GATAATATAGAGGCATATAACAGCGATTACGAAA 10425 32 100.0 36 ................................ CGGTAAATGAATTTTATTATATAGGTAGCAGCTTAA 10357 32 100.0 33 ................................ ATAATATTTTCTTAATCTCTCTTTCGCTTTTTC 10292 32 100.0 37 ................................ TCGTTATCCTCTTGTAACCTAAGAATCTCGCTTGAAG 10223 32 100.0 35 ................................ GGAAACTCCTCTCGTCGAATACGACAAAGGTGAAA 10156 32 100.0 33 ................................ AGTAATTATATAATGATATTCGTTGTTATCACC 10091 32 100.0 34 ................................ ATCTTTAACAGTAACCCTTGATCTAACAGTTCAT 10025 32 100.0 35 ................................ AGTAAATAAAATGTTTCATGAAAGTGATTTGCAAA 9958 32 100.0 33 ................................ TTCCTTCTTCTTGTGCTTTTTCTTGTAATTTTC 9893 32 100.0 33 ................................ TGAATCGCCTCTTGAATGTCAACATTTGTCAAC 9828 32 100.0 34 ................................ CTCCTAATTTTTATTTCTTATCAAAATTATATCG 9762 32 100.0 37 ................................ AATCTCTCCTTAAGTAACTTGGCTTCTTCGTAATTCA 9693 32 100.0 34 ................................ ATTTTCACTTATTTCTTCAAAAGCTGCATTCACT 9627 32 100.0 33 ................................ ACAATAAATCCATCATATGCCTTCATAAATCCA 9562 32 100.0 36 ................................ ACGTGCATCTTTTGCGTTTATTCCTGCTCCAGTATA 9494 32 100.0 35 ................................ TTCATTTCCCCATACTACGCTAATTTTATCGCCTA 9427 32 100.0 33 ................................ CGCTATGAAGTATATGAGAATGAATCATTAGTT 9362 32 100.0 35 ................................ AGGTGAACTGTATTCATATGATAACGAAACGGATC 9295 32 100.0 34 ................................ TGCAGCACTAGAGCCGTCTAATACAGGAGGTATA 9229 32 96.9 36 .......................A........ GGATGCCAAGATGAGTTTTAGACTGCAAAGTGGTAA 9161 32 100.0 33 ................................ TAATTTAACAATAGAGCATATAGAAACTAATTC 9096 32 100.0 34 ................................ TAAAAGACTTAACAGGACGTGAATACCCTGCAAT 9030 32 100.0 35 ................................ AGAAGTGAAAAACAAGCTATAAAAAAATAGCGCAA 8963 32 100.0 34 ................................ TAGCATCTATCCGTTATGCAGTAAGTAGATATGG 8897 32 100.0 35 ................................ TTGTTCTCCGTCCTCACCTTCTGTTAATGCGATAG 8830 32 100.0 33 ................................ AATGGTAGGCCTGCTGAAATCTTAACAGGGTAA 8765 32 100.0 33 ................................ TATATTATCAATTGTGAATACTCTTTTTGATCC 8700 32 96.9 33 ..................T............. CAATATTGCAGAATGTAGAATTTAAAGTAAACA 8635 32 100.0 35 ................................ ATCCAAGGGTATTACCTGAGAGTGTTAAAGATATG 8568 32 100.0 33 ................................ ACTGTTTTTTTTAAACAAGTCCAGGAATCCTAT 8503 32 100.0 33 ................................ AAGGATTTTGGAAAGAAAATAGCACCGTAATTA 8438 32 100.0 35 ................................ TACCACAAGAGGATTTTTAGTTAAGTTCGTTGCCC 8371 32 100.0 34 ................................ TAAATTAGTAGTGTCTATATGCTCGCTAATGGAT 8305 32 100.0 33 ................................ AAACCGTGCCTTTGATACCCTTTGACCTTCATA 8240 32 100.0 36 ................................ TCTTTTTTGTTGTTATGGATTGGATTACAGGAGTAC 8172 32 96.9 0 ..............................C. | ========== ====== ====== ====== ================================ ===================================== ================== 46 32 99.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATATCCACCATTTTTATGGAAGTAGGTGAAGTGATGCTAGTAATAATCACATATGATGTTAGTACGTCAAGCAATGGAGGAACAAAAAGGCTTAGAAAAGTTTCGAAGGCATGCCAAAATTACGGTCAACGAGTACAAAACTCTGTTTTTGAATGTATTGTAGACGCTACACAATATACAATATTAAAACATGAATTAGAGAAACTTATTGACCCTACAAAAGATAGTCTTCGATTTTATAATTTAGGTAATAATCATAAAGCGAAAGTGGATCATATTGGAATAAAAGAATCTATAGATTTAGAAGAGCCATTATTATTTTAGTTAATGGTGCTAACCCTAAGCGCACATGAAATGCATAGGGGGTTAGCACCAGAAAATAGACTACTAATAGATAAAAAACTGGAAAATAGTAAGAATAAGTTATGTGATATAGTATATTTTTAGAAGAATAGTATTCTTTTGGAATATATGTTCTTGTTTTTTAAAGGAATTCGCT # Right flank : TTTTAGTACAATGTAACAGTATCCTTTATTTCCAAATGCGTGGTCTAACTCCACCGTCTTTAAACGGTATCCGCTTTAGGCCTATCTTTTAATGTCCATAATTAAGTTATAAGGTGAAAAGTATGGATGGATATAAGAAGTATAGCCATGCAGTATATGATATCTAGTACTATGTAATCTGGGTAACCTTTGATATCGGTTTATGGGGAATTATCTTCGGTATTTGTGGTCACTTAGTTTTAAATATACAGTGAGAAAATAAATAAATGGGAAAAGACTATTTTCTCCCATTTATTTATAAGAATACATTGGTAGTTGTAAATAGTAAGGTAAATAATAAGGTAAATAATAAGGTAAATAGTAGCTAATGATACAAGAAGGATGTTTGTTGACGATTAAGAAAGCACCAATCTTTATTCAAAAAGGAGGCACATCTTTGAACTGTTGCTGTGATAGTGGAAAAACAAACGATTTAAAAATCGAAGGTGATGTAGGAGCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19941-20764 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRA01000046.1 Virgibacillus necropolis strain DE0129 NODE_46_length_26307_cov_179.628448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19941 32 100.0 34 ................................ ATCCTTTAGCCATGCTAGACCATTGTCTAGTAAC 20007 32 100.0 36 ................................ TATCTATTACAATACATCTTATCCAATAAGCCTATA 20075 32 100.0 33 ................................ TTTAATAGAATCGGAAATTTTCACTTGATACTG 20140 32 100.0 34 ................................ TGCTTTGGAATCTGTTAAAGGAACATCATTCGGA 20206 32 100.0 34 ................................ ATTACGGAACAACTCCCTTTTGCCGAATCCATCG 20272 32 100.0 33 ................................ TGATTATGTATCGGATATGGTTCAAAAAGTAAA 20337 32 100.0 34 ................................ GCAGCGGTTGCCATTCCGTCTATATCGAAAGTAA 20403 32 100.0 33 ................................ ACTTGCATTTCCAGTGATAATATACTCATCAGC 20468 32 100.0 35 ................................ AATCCTCAACATACTCCCACAATTCATCAACTGTA 20535 32 100.0 36 ................................ TCGACTAACCATCATCGAAGAAAACGACGTAGAACA 20603 32 100.0 33 ................................ TAAGATTGTTGGTTTAATCATTCCGAATCACCA 20668 32 100.0 33 ................................ TCATCAAGCATGAGAAGTTCTACCACAAAGCGG 20733 32 93.8 0 ..........T....A................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.5 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : CTGTATACTTTCCCAAGTCATGAAGCAGGCCTGCTAAACCAGCAACATGTGTAAGTCCTAACTTTCCGCCAAATACCTCAGCTAAATGTTTAACACCATTTAAATGCTCGGAAACGGTTTGAATTTCCTTATCACTTTCACGCACATGGGCAATATAGACCATTTTAAACCTCCTTTAATAATTCCATAAATAAATAGTACCACTAAATGGATAAATTAACAGTATTTGGTTACTAAATTTTCACATTATCGTATTTTAATCTATTCCTATGAAATGCTAATAGTATGTTTGTATAATTTTGCTAGGGAGGTCGTTATTATTTTAGTTGTGGTGCTAACCCTATGCACACATAAAATCATTAATAGGTTAGCACTAAGAATAGCCTCGTTATATGTATTTCTTTGTGATATGATGTGTTTATATTATAAAAGATTACATATTTTTACCTAGAATATATCTTTTTTCCAAATGCACGTTCGCATTTTGGGCGAAATTCGCT # Right flank : TGGCGTGTGCCCGATAGCAACGTATCGATAGATAAATATGATTTTTCAAAAAACGTCAATGGTATACTGAGGCCACTAAAAAGTGTCTTCCTTTAAAAACTACCTAACACTTTTTTAGTGGCCTTTGGTATTTGATATTCCTTTTCACAACATTCATCCTACAGACAGTATATTTTCATTATAAAAACCTCGTGTAACTCGGGATATAAGAGATAACTAAAAGCATATTATCCTTCATCAAAGGTTAAAAGTTGAAGAAATAATATTCACCTATTTGATTACTTTTATCGTGGATTCATAACCTAATATACTAAGCCAATAAACATATATAGCAAAAATTGACCGATGTAATGGGTCCATTTCATTACCGCATTCACATCAGCCAATTAACTACTTAATTAACCTCTAACTTTCTTACCTTAAATTTGAACAGTACTATTCCCTCGTCTCAACATTCCTTCCCTCAAAGTTATCAAGCAATGCACGCACTTCATCTGTTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //