Array 1 971838-973512 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030225.1 Salmonella enterica strain SA20041605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 971838 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 971899 29 100.0 32 ............................. CGACGACAGGTATTCTACAGGCTACCCAACGC 971960 29 100.0 32 ............................. TTCTGTCGCGCACCGGCGACGGCACGCCGCCG 972021 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 972082 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 972143 29 100.0 32 ............................. CGTTGCAACTGGAGATCTTGCCCTGTATTGAT 972204 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 972265 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 972326 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 972387 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 972448 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 972509 29 100.0 32 ............................. ACGCGTTAGCCCGTCAGGAACGCTACTGGGAA 972570 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 972631 29 100.0 32 ............................. TCGTAAATCTGTTTCAGTGTTTTAGCGCGCAG 972692 29 100.0 32 ............................. CCACGCAAGCCAGTACCGCCAGTTTTACCAGC 972753 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 972814 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 972875 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 972936 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 972997 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 973058 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 973119 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 973180 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 973241 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 973302 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 973363 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 973424 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 973485 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 989796-991535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030225.1 Salmonella enterica strain SA20041605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 989796 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTACGCC 989857 29 100.0 32 ............................. CGACGCCGAATCCCCGTATCACTACCTGCGGA 989918 29 100.0 32 ............................. GCACGGGGTTGTCAGTTATCTGGCTCGATCCA 989979 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 990040 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 990101 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 990162 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 990223 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 990284 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 990345 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 990407 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 990469 29 100.0 32 ............................. TCGGCACCGCGCCAACATCGGCATAGGTCAGC 990530 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 990591 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 990652 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 990713 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 990774 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 990835 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 990896 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 990957 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 991018 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 991079 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 991140 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 991201 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 991262 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 991323 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 991384 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 991445 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 991506 29 93.1 0 A...........T................ | A [991532] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //