Array 1 684449-682302 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOS01000001.1 Streptococcus gordonii strain BCA22 D8823_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 684448 36 100.0 30 .................................... GCTTTGTGCAAGTGCTTATTTTCTCTCCAA 684382 36 100.0 30 .................................... CATAGTATAACCATCAGAATCTTCAATAAC 684316 36 100.0 30 .................................... CGCCTCATGTAGTTGTCTTCCTGACACTAT 684250 36 100.0 30 .................................... GATGAAACGTGGACTTTTAACGACCGCTCC 684184 36 100.0 30 .................................... TTACCATTATTTTGCGTTAGCTGTAGTTGT 684118 36 100.0 30 .................................... ATGATGAATCCTGTGACGGGTGAAGTCGAC 684052 36 100.0 30 .................................... AGCAAGCAGAGATAACTGTAGATGACGCAA 683986 36 100.0 30 .................................... CCAGAAGTAATAGACTACATGGTCAGAGAG 683920 36 100.0 30 .................................... CGTCACCGATTTCTAATTCCTCATACTGCT 683854 36 100.0 30 .................................... TAACGGAATGAATACAAAATTTAGAGCATG 683788 36 100.0 29 .................................... CACAAGCGATTATGTGAAGGGGCGCTATG 683723 36 100.0 30 .................................... GAAAAAATCTGGATTGGTTGATTGAGGAGA 683657 36 100.0 30 .................................... TGTCCTCGGGGTAACAGCGACCCCCGACCG 683591 36 100.0 30 .................................... TCTCCCTTGATTAATAGCATTGCGTCGTTC 683525 36 100.0 30 .................................... ATGCCGTTTTTGATGAAAATTTCTTCTATC 683459 36 100.0 30 .................................... TTGCGATATACTTTGGCCCAACCACCAAGC 683393 36 100.0 30 .................................... TTTCAAAACTGTGTCTTCTTCTGCTCCCTC 683327 36 100.0 30 .................................... GAATGATTGGATAATCTAAGCTCAAAGTCT 683261 36 100.0 30 .................................... CTTGACCAAGTAGAGAATATAACAGACCGT 683195 36 100.0 30 .................................... GATAGATTAAGTTAAGGTTTCCGTCATTAT 683129 36 100.0 30 .................................... TAGTCCTTCAACTCTTCGTCCAGGATCTTT 683063 36 100.0 30 .................................... CGGTCGTATGCTGTGTAAGGGTCGTCGCAT 682997 36 100.0 30 .................................... TTTTTCGATTTCATCAACTTCATCTTCTTT 682931 36 100.0 30 .................................... TTTTTCGATTTCATCAACTTCATCTTCTTT 682865 36 100.0 30 .................................... CTAGTACAAGGTTTAGTTTTTGAAGATTAA 682799 36 100.0 30 .................................... CAGCCCAAGTTTCTAATGATGAGTTTTACA 682733 36 100.0 30 .................................... CTGTTAACTCGTCTACATAATGTTTAACAA 682667 36 100.0 30 .................................... TTATGCCCGTGTACAGCGTGGGGATATTGT 682601 36 100.0 30 .................................... GATAACGCTAGTTACAATTTAATCGCTATG 682535 36 100.0 30 .................................... AATATACCTTTGAATCGATGGGATTTTTTA 682469 36 100.0 30 .................................... CCTTTAGCTTCTAAACTCAATTTTTCGTCC 682403 36 100.0 30 .................................... ATTAGAGTATGCAGTAGAACTAAGAGAGTG 682337 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTAATCAATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTATCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTTTTCATCAATGCGACCGCCTATCTATCAGAGGATGAGTTAATAAATCTGATAGAGTATATCCAACTCAATCAACTGAGAGTCTTATTTGTTGAACCTCGAAAAGTCTATGATTTCCCGCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAAGAATTGGAACTTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AATATTAAGATTTAATTCAATTCAACCATACTAGCTAGAGGTTGGTGGGGAGTTCAAATGAGAAAGCAGAGAGAAAAGTTATTAAACAGCGATATAAGCACAAGCGCAATCGCTAAAGGAGCAGGCGTTCCTTGGTCTACAGTAGCAGACCTTAGAAACGGAAAAACTAGCATGGATAAGATGTCTTTGCTTACAGCTGAGAAATTAAATGATTTTGCGGAAAAATCAGAAGCGGAAAAGCACGATGAGTTTTACAATTAATCTATCAAAAATAACCACCTAAACAGGTGGTTGTTTTAGTATCTATCACTGCTTACTAGAAGAAGAACTTGAACTGCTTGAGCTGTCGTTGCTGGTTTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGATCAATAGTCGATTCGCCCTCGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //